메뉴 건너뛰기




Volumn 19, Issue SUPPL. 2, 2003, Pages

Inferring strengths of protein-protein interactions from experimental data using linear programming

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; BIOLOGICAL MODEL; CONFERENCE PAPER; GENE SEQUENCE; MATHEMATICAL ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PRIORITY JOURNAL; PROBABILITY; PROTEIN DOMAIN; PROTEIN PROTEIN INTERACTION; STATISTICAL MODEL; SYSTEM ANALYSIS;

EID: 22944492735     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/btg1061     Document Type: Conference Paper
Times cited : (24)

References (21)
  • 1
    • 0004493166 scopus 로고    scopus 로고
    • On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems
    • Amaldi, E. and Kann, V. (1998) On the approximability of minimizing nonzero variables or unsatisfied relations in linear systems. Theor. Comput. Sci., 209, 237-260.
    • (1998) Theor. Comput. Sci. , vol.209 , pp. 237-260
    • Amaldi, E.1    Kann, V.2
  • 2
    • 0033957834 scopus 로고    scopus 로고
    • The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000
    • Bairoch, A. and Apweiler, R. (2000) The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000. Nucleic Acids Res., 28, 45-48.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 45-48
    • Bairoch, A.1    Apweiler, R.2
  • 4
    • 0026860799 scopus 로고
    • Robust linear programming discrimination of two linearly inseparable sets
    • Bennet, K.P. and Mangasarian, O.L. (1992) Robust linear programming discrimination of two linearly inseparable sets. Optimization Methods and Software, 1, 23-34.
    • (1992) Optimization Methods and Software , vol.1 , pp. 23-34
    • Bennet, K.P.1    Mangasarian, O.L.2
  • 5
    • 0035023445 scopus 로고    scopus 로고
    • Predicting protein-protein interactions from primary structure
    • Bock, J.R. and Gough, D.A. (2001) Predicting protein-protein interactions from primary structure. Bioinformatics, 17, 455-460.
    • (2001) Bioinformatics , vol.17 , pp. 455-460
    • Bock, J.R.1    Gough, D.A.2
  • 6
    • 34249753618 scopus 로고
    • Support-vector networks
    • Cortes, C. and Vapnik, V. (1995) Support-vector networks. Machine Learning, 20, 273-297.
    • (1995) Machine Learning , vol.20 , pp. 273-297
    • Cortes, C.1    Vapnik, V.2
  • 7
    • 0036799752 scopus 로고    scopus 로고
    • Inferring domain-domain interactions from protein-protein interactions
    • Deng, M., Mehta, S., Sun, F. and Chen, T. (2002) Inferring domain-domain interactions from protein-protein interactions. Genome Res., 12, 1540-1548.
    • (2002) Genome Res. , vol.12 , pp. 1540-1548
    • Deng, M.1    Mehta, S.2    Sun, F.3    Chen, T.4
  • 8
    • 0033523989 scopus 로고    scopus 로고
    • Protein interaction maps for complete genomes based on gene fusion events
    • Enright, A.J., Iliopoulos, I., Kyrpides, N.C. and Ouzounis, C.A. (1999) Protein interaction maps for complete genomes based on gene fusion events. Nature, 402, 86-90.
    • (1999) Nature , vol.402 , pp. 86-90
    • Enright, A.J.1    Iliopoulos, I.2    Kyrpides, N.C.3    Ouzounis, C.A.4
  • 9
    • 0035672003 scopus 로고    scopus 로고
    • Probabilistic prediction of unknown metabolic and signal-transduction networks
    • Gomez, G.M., Lo, S.H. and Rzhetsky, A. (2001) Probabilistic prediction of unknown metabolic and signal-transduction networks. Genetics, 159, 1291-1298.
    • (2001) Genetics , vol.159 , pp. 1291-1298
    • Gomez, G.M.1    Lo, S.H.2    Rzhetsky, A.3
  • 10
    • 0033974688 scopus 로고    scopus 로고
    • Towards a protein-protein interaction map of the budding yeast: A comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins
    • Ito, T., Tashiro, K., Muta, S., Ozawa, R., Chiba, T., Nishizawa, M., Yamamoto, K., Kuhara, S. and Sakaki, Y. (2000) Towards a protein-protein interaction map of the budding yeast: a comprehensive system to examine two-hybrid interactions in all possible combinations between the yeast proteins. Proc. Natl Acad. Sci. USA, 97, 1143-1147.
    • (2000) Proc. Natl. Acad. Sci. USA , vol.97 , pp. 1143-1147
    • Ito, T.1    Tashiro, K.2    Muta, S.3    Ozawa, R.4    Chiba, T.5    Nishizawa, M.6    Yamamoto, K.7    Kuhara, S.8    Sakaki, Y.9
  • 12
    • 0002714543 scopus 로고    scopus 로고
    • Making large-scale SVM learning practical
    • Schölkopf, B., Burges, C. and Smola, A. (eds). MIT Press
    • Joachims, T. (1999) Making large-scale SVM learning practical. In Schölkopf, B., Burges, C. and Smola, A. (eds), Advances in Kernel Methods-Support Vector Learning. MIT Press, pp. 169-185.
    • (1999) Advances in Kernel Methods-Support Vector Learning , pp. 169-185
    • Joachims, T.1
  • 13
    • 0642343787 scopus 로고    scopus 로고
    • Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair
    • Kim, W.K., Park, J. and Suh, J.K. (2002) Large scale statistical prediction of protein-protein interaction by potentially interacting domain (PID) pair. Genome Informatics, 13, 42-50.
    • (2002) Genome Informatics , vol.13 , pp. 42-50
    • Kim, W.K.1    Park, J.2    Suh, J.K.3
  • 14
    • 0033618555 scopus 로고    scopus 로고
    • Detecting protein function and protein-protein interactions from genome sequences
    • Marcotte, E.M., Pellegrini, M., Ng, H., Rice, W.D., Yeates, T.O. and Eisenberg, D. (1999) Detecting protein function and protein-protein interactions from genome sequences. Science, 285, 751-753.
    • (1999) Science , vol.285 , pp. 751-753
    • Marcotte, E.M.1    Pellegrini, M.2    Ng, H.3    Rice, W.D.4    Yeates, T.O.5    Eisenberg, D.6
  • 16
    • 0035943340 scopus 로고    scopus 로고
    • Correlated sequence-signatures as markets of protein-protein interaction
    • Sprinzak, E. and Margalit, H. (2001) Correlated sequence-signatures as markets of protein-protein interaction. J. Mol. Biol., 311, 681-692.
    • (2001) J. Mol. Biol. , vol.311 , pp. 681-692
    • Sprinzak, E.1    Margalit, H.2
  • 19
    • 0035224503 scopus 로고    scopus 로고
    • Protein-protein interaction map inference using interacting domain profile pairs
    • Wojcik, J. and Schächter, C. (2001) Protein-protein interaction map inference using interacting domain profile pairs. Bioinformatics, 17, S296-S305.
    • (2001) Bioinformatics , vol.17
    • Wojcik, J.1    Schächter, C.2
  • 20
    • 0036088133 scopus 로고    scopus 로고
    • DIP: The database of interacting proteins. A research tool for studying cellular networks of protein interactions
    • Xenarios, I., Salwínski, L., Duan, X.J., Higney, P., Kim, S. and Eisenberg, D. (2002) DIP: The database of interacting proteins. A research tool for studying cellular networks of protein interactions. Nucleic Acids Res., 30, 303-305.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 303-305
    • Xenarios, I.1    Salwínski, L.2    Duan, X.J.3    Higney, P.4    Kim, S.5    Eisenberg, D.6
  • 21
    • 0034800374 scopus 로고    scopus 로고
    • InterProScan-an integration platform for the signature-recognition methods in InterPro
    • Zdobnov, E.M. and Apweiler, R. (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics, 17, 847-848.
    • (2001) Bioinformatics , vol.17 , pp. 847-848
    • Zdobnov, E.M.1    Apweiler, R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.