Phylogeography of Fischer's blue, Tongeia fischeri, in Japan: Evidence for introgressive hybridization

Molecular Phylogenetics and Evolution

Volumn 66, Issue 1, 2013, Pages 316-326

  Jeratthitikul, Ekgachai ^a   Hara, Takehiro ^b   Yago, Masaya ^c   Itoh, Tateo ^b   Wang, Min ^d   Usami, Shin Ichi ^b   Hikida, Tsutomu ^a  

^a KYOTO UNIVERSITY   (Japan)

^b SHINSHU UNIVERSITY   (Japan)

^c UNIVERSITY OF TOKYO   (Japan)

^d SOUTH CHINA AGRICULTURAL UNIVERSITY   (China)

Author keywords

Evolutionary history; Kyushu; Lepidoptera; Mitochondrial introgression; Range expansion; Secondary contact

Indexed keywords

MITOCHONDRIAL DNA;

ANIMAL; ARTICLE; BAYES THEOREM; BUTTERFLY; CELL NUCLEUS; CLASSIFICATION; DNA SEQUENCE; GENE; GENETIC VARIABILITY; GENETICS; HAPLOTYPE; HYBRIDIZATION; JAPAN; MOLECULAR EVOLUTION; PHYLOGENY; PHYLOGEOGRAPHY; STATISTICAL MODEL;

ANIMALS; BAYES THEOREM; BUTTERFLIES; CELL NUCLEUS; DNA, MITOCHONDRIAL; EVOLUTION, MOLECULAR; GENES, INSECT; GENETIC VARIATION; HAPLOTYPES; HYBRIDIZATION, GENETIC; JAPAN; LIKELIHOOD FUNCTIONS; PHYLOGENY; PHYLOGEOGRAPHY; SEQUENCE ANALYSIS, DNA;

LEPIDOPTERA; LYCAENIDAE;

EID: 84870235724     PISSN: 10557903     EISSN: 10959513     Source Type: Journal    
DOI: 10.1016/j.ympev.2012.10.009     Document Type: Article

References (87)

1. Akaike H. A new look at the statistical model identification. IEEE Trans. Automat. Control 1974, 19:716-723.
2. Avise J.C. Phylogeography: The history and Formation of Species 2000, Harvard University Press, Cambridge, Massachusetts.
3. Avise J.C. Phylogeography: retrospect and prospect. J. Biogeogr. 2009, 36:3-15.
4. Ballard J.W.O., Whitlock M.C. The incomplete natural history of mitochondria. Mol. Ecol. 2004, 13:729-744.
5. Bandelt H.J., Forster P., Röhl A. Median-joining networks for inferring intraspecific phylogenies. Mol. Biol. Evol. 1999, 16:37-48.
6. Barker F.K., Lutzoni F.M. The utility of the incongruence length difference test. Syst. Biol. 2002, 51:625-637.
7. Bensch S., Irwin D.E., Irwin J.H., Kvist L., Akesson S. Conflicting patterns of mitochondrial and nuclear DNA diversity in Phylloscopus warblers. Mol. Ecol. 2006, 15:161-171.
8. Bogdanowicz S.M., Wallner W.E., Bell J., O'Dell T.M., Harrison R.G. Asian gypsy moth (Lepidoptera: Lymantriidae) in North America evidence from molecular data. Ann. Entomol. Soc. Am. 1993, 86:710-715.
9. Brower A.V.Z. Rapid morphological radiation and convergence among races of the butterfly Heliconius erato inferred from patterns of mitochondrial DNA evolution. Proc. Natl. Acad. Sci. U.S.A. 1994, 91:6491-6495.
10. Coyne J.A., Orr H.A. Speciation 2004, Sinauer Associates, Sunderland, Massachusetts.
11. Currat M., Ruedi M., Petit R.J., Excoffier L. The hidden side of invasions: massive introgression by local genes. Evolution 2008, 62:1908-1920.
12. Dopman E.B., Pérez L., Bogdanowicz S.M., Harrison R.G. Consequences of reproductive barriers for genealogical discordance in the European corn borer. Proc. Natl. Acad. Sci. U.S.A. 2005, 102:14706-14711.
13. Dowling D.K., Friberg U., Lindell J. Evolutionary implications of nonneutral mitochondrial genetic variation. Trends Ecol. Evol. 2008, 23:546-554.
14. Drummond A.J., Rambaut A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7:214.
15. Drummond A.J., Ho S.Y.W., Phillips M.J., Rambaut A. Relaxed phylogenetics and dating with confidence. PLoS Biol. 2006, 4:e88.
16. Excoffier L., Lischer H.E.L. Arlequin suite ver3.5: a new series of programs to perform population genetics analyses under Linux and Windows. Mol. Ecol. Resour. 2010, 10:564-567.
17. Excoffier L., Foll M., Petit R. Genetic consequences of range expansion. Annu. Rev. Ecol. Evol. Syst. 2009, 40:481-501.
18. Farris J.S., Kallersjo M., Kluge A.G., Bult C. Constructing a significance test for incongruence. Syst. Biol. 1995, 44:570-572.
19. Folmer O., Black M., Hoeh W., Luts R.A., Vrijenhoek R.C. DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates. Mol. Mar. Biol. Biotechnol. 1994, 3:294-299.
20. Freeland J.R. Molecular Ecology 2005, John Wiley & Sons, Chichester.
21. Fu X.Y. Statistical tests of neutrality of mutations against population growth, hitchhiking and background selection. Genetics 1997, 147:915-925.
22. Fujioka T. Butterflies of Japan 1975, Kodansha, Tokyo.
23. Fukuda, H., Hama, E., Kuzuya, T., Takanashi, A., Takanashi, M., Tanaka, B., Tahaka, H., Wakabayashi, M., Watanabe, Y., 1984. The Life Histories of Butterflies in Japan. vol. III. Hoikusha, Osaka (In Japanese with English summary).
24. Funk D.J., Omland K.E. Species-level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA. Ann. Rev. Ecol. Evol. Syst. 2003, 34:397-423.
25. Galtier N., Nabholz B., Glémin S., Hurst G.D.D. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Mol. Ecol. 2009, 18:4541-4550.
26. Gompert Z., Forister W.L., Fordyce J.A., Nice C.C. Widespread mito-nuclear discordance with evidence for introgressive hybridization and selective sweeps in Lycaeides. Mol. Eol. 2008, 17:5231-5244.
27. Hewitt G.M. Hybrid zones - natural laboratories for evolutionary studies. Trends Ecol. Evol. 1988, 3:158-167.
28. Hewitt G.M. Some genetic consequences of ice ages, and their role in divergence and speciation. Biol. J. Linn. Soc. 1996, 58:256-347.
29. Hewitt G.M. Speciation, hybrid zones and phylogeography - or seeing genes in space and time. Mol. Ecol. 2001, 10:537-549.
30. Hewitt G.M. Quaternary phylogeography: the roots of hybrid zones. Genetica 2011, 139:617-638.
31. Hida H. Revision of Fisher's blue Tongeia fischeri (Eversmann, 1843) (Lepidoptera, Lycaenidae), with description of a new subspecies. Butterflies (Sibataniozephyrus) 2005, 40:18-25. (In Japanese with English summary).
32. Hirowatari, T., 1993. Overview of problems in Japan. In: New, T.R. (Ed.), Conservation Biology of Lycaenidae (Butterflies). IUCN Species Survival Commission Paper No. 8. IUCN, Switzerland, pp. 35-36.
33. Ho S.Y.W., Saarma U., Barnett R., Haile J., Shapiro B. The effect of inappropriate calibration: three case studies in molecular ecology. PLoS ONE 2008, 3:e1615.
34. Horikawa, Y., 1976. Atlas of the Japanese Flora II on Introduction to Plant Sociology of East Asia. Gakken, Tokyo.
35. Huang H., Chen Z. A new species of Tongeia Tutt, [1908] from northeast Yunnan, China (Lepidoptera: Lycaenidae). Atalanta 2006, 37(184-190):284.
36. Huelsenbeck J.P., Hillis D.M. Success of phylogenetic methods in the four taxon case. Syst. Biol. 1993, 42:247-264.
37. Huelsenbeck J.P., Ronquist F. MrBayes: Bayesian inference of phylogeny. Bioinformatics 2001, 17:754-755.
38. Hurst G.D.D., Jiggins F.M. Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inheritedsymbionts. Proc. R. Soc. B 2005, 252:1525-1534.
39. Ikeda H., Kubota K., Cho Y., Liang H., Sota T. Different phylogeographic patterns in two Japanese Silpha species (Coleoptera: Silphidae) affected by climatic gradients and topography. Biol. J. Linn. Soc. 2009, 98:452-467.
40. Jobb G., von Haeseler A., Strimmer K. Treefinder: a powerful graphical analysis environment for molecular phylogenetics. BMC Evol. Biol. 2004, 4:18.
41. Kaizuka S. Late Cenozoic palaeography of Japan. GeoJournal 1980, 4:101-109.
42. Korshunov, Y.P., Gorbunov, P., 1995. Butterflies of the Asian Part of Russia, A Hand Book. Ural University Press, Ekaterinburg (in Russian, English translation by Kosterin, O). http://pisum.bionet.nsc.ru/kosterin/korgor/index.htm.
43. Kronforst M.R., Young L.G., Blume L.M., Gilbert L.E. Multilocus analyses of admixture and introgression among hybridizing Heliconius butterflies. Evolution 2006, 60:1254-1268.
44. Larget B., Simon D.L. Markov chain Monte Carlo algorithms for the Bayesian analysis of phylogenetic trees. Mol. Biol. Evol. 1999, 16:750-759.
45. Lohman D.J., Peggie D., Pierce N.E., Meier R. Phylogeography and genetic diversity of a widespread Old World butterfly, Lampides boeticus (Lepidoptera: Lycaenidae). BMC Evol. Biol. 2008, 8:301.
46. Mallarino R., Bermingham E., Willmott K.R., Whinnett A., Jiggins C.D. Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes. Mol. Phylogenet. Evol. 2005, 34:625-644.
47. Mallet J. Hybridization as an invasion of the genome. Trends Ecol. Evol. 2005, 20:229-237.
48. Marino I.A.M., Pujolar J.M., Zane L. Reconciling deep calibration and demographic history: bayesian inference of post glacial colonization patterns in Carcinus aestuarii (Nardo, 1847) and C. maenas (Linnaeus, 1758). PLoS ONE 2011, 6:e28567.
49. Martinsen G.D., Whitham T.G., Turek R.J., Keim P. Hybrid populations selectively filter gene introgression between species. Evolution 2001, 55:1325-1335.
50. Maynard-Smith J., Haigh J. The hitch-hiking effect of a favourable gene. Genet. Res. 1974, 23:23-35.
51. Mishmar D., Ruiz-Pesinia E., Golik P., Macaulayd V., Clarke A.G., Hosseinib S., Brandona M., Easleyf K., Cheng E., Brownb M.D., Sukerniki R.I., Olckersj A., Wallacea D.C. Natural selection shaped regional mtDNA variation in humans. Proc. Natl. Acad. Sci. U.S.A. 2003, 100:171-176.
52. Moore W.S. Inferring phylogenies from mtDNA variation: mitochondrial gene trees versus nuclear-gene trees. Evolution 1995, 49:718-726.
53. Morando M., Avila L.J., Sites J.W. Sampling strategies for delimiting species: genes, individuals, and populations in the Liolaemus elongatus-kriegi complex (Squamata: Liolaemidae) in Andean-Patagonian South America. Syst. Biol. 2003, 52:159-185.
54. Murata, G., 2004. Kinki-chiho Shokubutsushi (Flora of the Kinki District). Osaka Natural History Center, Osaka (in Japanese).
55. Nazari V., Sperling F.A.H. Mitochondrial DNA divergence and phylogeography in western Palaearctic Parnassiinae (Lepidoptera: Papilionidae): how many species are there?. Insect Syst. Evol. 2007, 38:121-138.
56. Nei M. Molecular Evolutionary Genetics 1987, Columbia University Press, New York.
57. Nei M., Li W.H. Mathematical model for studying genetic variation in termsof restriction endonucleases. Proc. Natl. Acad. Sci. U.S.A. 1979, 76:5269-5273.
58. Nishizawa T., Kurabayashi A., Kunihara T., Sano N., Fujii T., Sumida M. Mitochondrial DNA diversification, molecular phylogeny, and biogeography of the primitive rhacophorid genus Buergeria in East Asia. Mol. Phylogenet. Evol. 2011, 59:139-147.
59. Nosil P., Crespi B.J., Sandoval C.P. Host-plant adaptation drives the parallel evolution of reproductive isolation. Nature 2002, 417:440-443.
60. Ohba H. Crassulaceae. Flora of Japan, 2b 2002, 10-31. Kodansha, Tokyo. K. Iwatsuki, D.E. Boufford, H. Ohba (Eds.).
61. Ohshima I., Yoshizawa K. Differential introgression causes genealogical discordance in host races of Acrocercops transecta (Insecta: Lepidoptera). Mol. Ecol. 2010, 19:2106-2119.
62. Papadopoulou A., Anastasiou L., Vogler A.P. Revisiting the insect mitochondrial molecular clock: the Mid-Aegean Trench calibration. Mol. Biol. Evol. 2010, 27:1659-1672.
63. Rambaut, A., 2009. FigTree v1.2.2. http://tree.bio.ed.ac.uk/software/figtree.
64. Rambaut, A., Drummond, A.J., 2007. Tracer v1.5. http://beast.bio.ed.ac.uk/Tracer.
65. Ramos-Onsins S.E., Rozas J. Statistical properties of new neutrality tests against population growth. Mol. Biol. Evol. 2002, 19:2092-2100.
66. Rozas J., Sánchez-DelBarrio J.C., Messeguer X., Rozas R. DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 2003, 19:2496-2497.
67. Satonaka M. A new subspecies of Tongeia fischeri from Japan. Choken Field 2003, 18:4-9. (in Japanese with English summary).
68. Satonaka M. On Tongeia fischeri in Tsushima and in Kyushu. Yadoriga 2009, 221:21-35. (in Japanese).
69. Schwarz G.E. Estimating the dimension of a model. Ann. Stat. 1978, 6:461-464.
70. Shirôzu, T., 2006. The Standard of Butterflies in Japan. Gakken, Tokyo (in Japanese).
71. Simmons R.B., Weller S.J. Utility and evolution of cytochrome b in insects. Mol. Phylogenet. Evol. 2001, 20:196-210.
72. Simon C., Frati F., Beckenbach A., Crespi B. Evolution, weighting, and phylogenetic utility of mitochondrial gene sequence and a compilation of conserved polymerase chain reaction primers. Ann. Entomol. Soc. Am. 1994, 87:651-701.
73. Sobel J.M., Chen G.F., Watt L.R., Schemske D.W. The biology of speciation. Evolution 2010, 64:295-315.
74. Sota T., Hayashi M. Comparative historical biogeography of Plateumaris leaf beetles (Coleoptera: Chrysomelidae) in Japan: interplay between fossil and molecular data. J. Biogeogr. 2007, 34:977-993.
75. Sota T., Nagata N. Diversification in a fluctuating island setting: rapid radiation of Ohomopterus ground beetles in the Japanese islands. Phil. Trans. R. Soc. Lond. B 2008, 363:3377-3390.
76. Suzuki H., Sato Y., Ohba N. Gene diversity and geographic differentiation in mitochondrial DNA of the Genji firefly, Luciola cruciata (Coleoptera: Lampyridae). Mol. Phylogenet. Evol. 2002, 22:193-205.
77. Tajima F. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics 1989, 123:585-595.
78. Tamura K., Dudley J., Nei M., Kumar S. MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol. Biol. Evol. 2007, 24:1596-1599.
79. Tanabe A.S. Kakusan: a computer program to automate the selection of a nucleotide substitution model and the configuration of a mixed model on multilocus data. Mol. Ecol. Notes 2007, 7:962-964.
80. Taylor D.J., Sprenger H.L., Ishida S. Geographic and phylogenetic evidence for dispersed nuclear introgression in a daphniid with sexual propagules. Mol. Ecol. 2005, 14:525-537.
81. Tsukada M. Vegetation and climate during the last glacial maximum in Japan. Quaternary Res. 1983, 19:212-235.
82. Vazquez P., Cooper S.J.B., Gosalvez J., Hewitt G.M. Nuclear DNA introgression across a Pyrenean hybrid zone between parapatric subspecies of the grasshopper Chorthippus parallelus. Heredity 1994, 73:436-443.
83. Yagi T., Sasaki G., Takebe H. Phylogeny of Japanese papilionid butterflies inferred from nucleotide sequences of the mitochondrial ND5 gene. J. Mol. Evol. 1999, 48:42-48.
84. Yago, M., 2007. Tongeia fischeri. In: Yata, O. (Ed.), Iconographia insectorum Japonicorum colore naturali edita, vol. I (Butterflies and moths). Hokuryukan, Tokyo, pp. 64-66 (in Japanese).
85. Yago M., Nakahara S., Abe W., Isohata Y., Tomokuni M., Ueshima R. A discovery of Acytolepis puspa (Lepidoptera, Lycaenidae) in the Kanto district, Japan: a geographic range extension, dispersal pathway inferred from ecology, morphology and molecular analyses. Trans. Lepid. Soc. Jpn. 2009, 60:9-24.
86. Yakovlev R.V. Revision of Fischer's blue Tongeia fischeri (Eversnmann, 1843) (Lepidoptera, Lycaenidae). Helios 2003, 4:181-197.
87. Zink R., Barrowclough G. Mitochondrial DNA under siege in avian phylogeography. Mol. Ecol. 2008, 17:2107-2121.