-
1
-
-
27644578848
-
Posttranslational modifications of proteins expanding nature's inventory
-
Englewood, Colo.: Roberts and Company Publishers
-
Walsh CT. Posttranslational modifications of proteins expanding nature's inventory. 2006, Englewood, Colo.: Roberts and Company Publishers.
-
(2006)
-
-
Walsh, C.T.1
-
2
-
-
33749346301
-
Modification of proteins by ubiquitin and ubiquitin-like proteins
-
10.1146/annurev.cellbio.22.010605.093503, 16753028
-
Kerscher O, Felberbaum R, Hochstrasser M. Modification of proteins by ubiquitin and ubiquitin-like proteins. Annual review of cell and developmental biology 2006, 22:159-180. 10.1146/annurev.cellbio.22.010605.093503, 16753028.
-
(2006)
Annual review of cell and developmental biology
, vol.22
, pp. 159-180
-
-
Kerscher, O.1
Felberbaum, R.2
Hochstrasser, M.3
-
3
-
-
23144449583
-
Delivery of ubiquitinated substrates to protein-unfolding machines
-
10.1038/ncb0805-742, 16056265
-
Elsasser S, Finley D. Delivery of ubiquitinated substrates to protein-unfolding machines. Nature cell biology 2005, 7(8):742-749. 10.1038/ncb0805-742, 16056265.
-
(2005)
Nature cell biology
, vol.7
, Issue.8
, pp. 742-749
-
-
Elsasser, S.1
Finley, D.2
-
4
-
-
0032079329
-
The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system
-
10.1101/gad.12.9.1338, 23193559
-
Gottesman S, Roche E, Zhou Y, Sauer RT. The ClpXP and ClpAP proteases degrade proteins with carboxy-terminal peptide tails added by the SsrA-tagging system. Genes & development 1998, 12(9):1338-1347. 10.1101/gad.12.9.1338, 23193559.
-
(1998)
Genes & development
, vol.12
, Issue.9
, pp. 1338-1347
-
-
Gottesman, S.1
Roche, E.2
Zhou, Y.3
Sauer, R.T.4
-
5
-
-
56449118262
-
Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis
-
10.1126/science.1163885, 2698935, 18832610
-
Pearce MJ, Mintseris J, Ferreyra J, Gygi SP, Darwin KH. Ubiquitin-like protein involved in the proteasome pathway of Mycobacterium tuberculosis. Science 2008, 322(5904):1104-1107. 10.1126/science.1163885, 2698935, 18832610.
-
(2008)
Science
, vol.322
, Issue.5904
, pp. 1104-1107
-
-
Pearce, M.J.1
Mintseris, J.2
Ferreyra, J.3
Gygi, S.P.4
Darwin, K.H.5
-
6
-
-
59149094603
-
Proteasomal protein degradation in Mycobacteria is dependent upon a prokaryotic ubiquitin-like protein
-
2631945, 19028679
-
Burns KE, Liu WT, Boshoff HI, Dorrestein PC, Barry CE. Proteasomal protein degradation in Mycobacteria is dependent upon a prokaryotic ubiquitin-like protein. J Biol Chem 2009, 284(5):3069-3075. 2631945, 19028679.
-
(2009)
J Biol Chem
, vol.284
, Issue.5
, pp. 3069-3075
-
-
Burns, K.E.1
Liu, W.T.2
Boshoff, H.I.3
Dorrestein, P.C.4
Barry, C.E.5
-
7
-
-
73849149089
-
Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii
-
10.1038/nature08659, 2872088, 20054389
-
Humbard MA, Miranda HV, Lim JM, Krause DJ, Pritz JR, Zhou G, Chen S, Wells L, Maupin-Furlow JA. Ubiquitin-like small archaeal modifier proteins (SAMPs) in Haloferax volcanii. Nature 2010, 463(7277):54-60. 10.1038/nature08659, 2872088, 20054389.
-
(2010)
Nature
, vol.463
, Issue.7277
, pp. 54-60
-
-
Humbard, M.A.1
Miranda, H.V.2
Lim, J.M.3
Krause, D.J.4
Pritz, J.R.5
Zhou, G.6
Chen, S.7
Wells, L.8
Maupin-Furlow, J.A.9
-
8
-
-
79251595632
-
Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins
-
10.1016/j.jmb.2010.11.040, 21112336
-
Ranjan N, Damberger FF, Sutter M, Allain FH, Weber-Ban E. Solution structure and activation mechanism of ubiquitin-like small archaeal modifier proteins. Journal of molecular biology 2011, 405(4):1040-1055. 10.1016/j.jmb.2010.11.040, 21112336.
-
(2011)
Journal of molecular biology
, vol.405
, Issue.4
, pp. 1040-1055
-
-
Ranjan, N.1
Damberger, F.F.2
Sutter, M.3
Allain, F.H.4
Weber-Ban, E.5
-
9
-
-
67349193285
-
Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes
-
10.1038/nsmb.1597, 19448618
-
Striebel F, Imkamp F, Sutter M, Steiner M, Mamedov A, Weber-Ban E. Bacterial ubiquitin-like modifier Pup is deamidated and conjugated to substrates by distinct but homologous enzymes. Nat Struct Mol Biol 2009, 16(6):647-651. 10.1038/nsmb.1597, 19448618.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.6
, pp. 647-651
-
-
Striebel, F.1
Imkamp, F.2
Sutter, M.3
Steiner, M.4
Mamedov, A.5
Weber-Ban, E.6
-
10
-
-
77950524360
-
The mycobacterial Mpa-proteasome unfolds and degrades pupylated substrates by engaging Pup's N-terminus
-
10.1038/emboj.2010.23, 2857465, 20203624
-
Striebel F, Hunkeler M, Summer H, Weber-Ban E. The mycobacterial Mpa-proteasome unfolds and degrades pupylated substrates by engaging Pup's N-terminus. The EMBO journal 2010, 29(7):1262-1271. 10.1038/emboj.2010.23, 2857465, 20203624.
-
(2010)
The EMBO journal
, vol.29
, Issue.7
, pp. 1262-1271
-
-
Striebel, F.1
Hunkeler, M.2
Summer, H.3
Weber-Ban, E.4
-
11
-
-
78549285675
-
"Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates
-
10.1016/j.molcel.2010.07.019, 2939144, 20705495
-
Burns KE, Cerda-Maira FA, Wang T, Li H, Bishai WR, Darwin KH. "Depupylation" of prokaryotic ubiquitin-like protein from mycobacterial proteasome substrates. Molecular cell 2010, 39(5):821-827. 10.1016/j.molcel.2010.07.019, 2939144, 20705495.
-
(2010)
Molecular cell
, vol.39
, Issue.5
, pp. 821-827
-
-
Burns, K.E.1
Cerda-Maira, F.A.2
Wang, T.3
Li, H.4
Bishai, W.R.5
Darwin, K.H.6
-
12
-
-
77957231199
-
Dop functions as a depupylase in the prokaryotic ubiquitin-like modification pathway
-
10.1038/embor.2010.119, 2948181, 20798673
-
Imkamp F, Striebel F, Sutter M, Ozcelik D, Zimmermann N, Sander P, Weber-Ban E. Dop functions as a depupylase in the prokaryotic ubiquitin-like modification pathway. EMBO Rep 2010, 11(10):791-797. 10.1038/embor.2010.119, 2948181, 20798673.
-
(2010)
EMBO Rep
, vol.11
, Issue.10
, pp. 791-797
-
-
Imkamp, F.1
Striebel, F.2
Sutter, M.3
Ozcelik, D.4
Zimmermann, N.5
Sander, P.6
Weber-Ban, E.7
-
13
-
-
36849063886
-
In vivo gene silencing identifies the Mycobacterium tuberculosis proteasome as essential for the bacteria to persist in mice
-
10.1038/nm1683, 3174471, 18059281
-
Gandotra S, Schnappinger D, Monteleone M, Hillen W, Ehrt S. In vivo gene silencing identifies the Mycobacterium tuberculosis proteasome as essential for the bacteria to persist in mice. Nature medicine 2007, 13(12):1515-1520. 10.1038/nm1683, 3174471, 18059281.
-
(2007)
Nature medicine
, vol.13
, Issue.12
, pp. 1515-1520
-
-
Gandotra, S.1
Schnappinger, D.2
Monteleone, M.3
Hillen, W.4
Ehrt, S.5
-
14
-
-
0348017149
-
The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide
-
10.1126/science.1091176, 14671303
-
Darwin KH, Ehrt S, Gutierrez-Ramos JC, Weich N, Nathan CF. The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide. Science 2003, 302(5652):1963-1966. 10.1126/science.1091176, 14671303.
-
(2003)
Science
, vol.302
, Issue.5652
, pp. 1963-1966
-
-
Darwin, K.H.1
Ehrt, S.2
Gutierrez-Ramos, J.C.3
Weich, N.4
Nathan, C.F.5
-
15
-
-
84860523799
-
Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria
-
10.1128/MMBR.05011-11, 22390973
-
Gao B, Gupta RS. Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria. Microbiology and molecular biology reviews: MMBR 2012, 76(1):66-112. 10.1128/MMBR.05011-11, 22390973.
-
(2012)
Microbiology and molecular biology reviews: MMBR
, vol.76
, Issue.1
, pp. 66-112
-
-
Gao, B.1
Gupta, R.S.2
-
16
-
-
34548746905
-
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum
-
10.1128/MMBR.00005-07, 2168647, 17804669
-
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D. Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum. Microbiology and molecular biology reviews: MMBR 2007, 71(3):495-548. 10.1128/MMBR.00005-07, 2168647, 17804669.
-
(2007)
Microbiology and molecular biology reviews: MMBR
, vol.71
, Issue.3
, pp. 495-548
-
-
Ventura, M.1
Canchaya, C.2
Tauch, A.3
Chandra, G.4
Fitzgerald, G.F.5
Chater, K.F.6
van Sinderen, D.7
-
18
-
-
79953306224
-
Fatty acid biosynthesis in actinomycetes
-
10.1111/j.1574-6976.2010.00259.x, 3079561, 21204864
-
Gago G, Diacovich L, Arabolaza A, Tsai SC, Gramajo H. Fatty acid biosynthesis in actinomycetes. FEMS microbiology reviews 2011, 35(3):475-497. 10.1111/j.1574-6976.2010.00259.x, 3079561, 21204864.
-
(2011)
FEMS microbiology reviews
, vol.35
, Issue.3
, pp. 475-497
-
-
Gago, G.1
Diacovich, L.2
Arabolaza, A.3
Tsai, S.C.4
Gramajo, H.5
-
19
-
-
71749085013
-
Clp chaperone-proteases: structure and function
-
10.1016/j.resmic.2009.08.006, 19732826
-
Kress W, Maglica Z, Weber-Ban E. Clp chaperone-proteases: structure and function. Research in microbiology 2009, 160(9):618-628. 10.1016/j.resmic.2009.08.006, 19732826.
-
(2009)
Research in microbiology
, vol.160
, Issue.9
, pp. 618-628
-
-
Kress, W.1
Maglica, Z.2
Weber-Ban, E.3
-
20
-
-
84855198122
-
Structure and function of the bacterial AAA protease FtsH
-
10.1016/j.bbamcr.2011.08.015, 21925212
-
Langklotz S, Baumann U, Narberhaus F. Structure and function of the bacterial AAA protease FtsH. Biochimica et biophysica acta 2012, 1823(1):40-48. 10.1016/j.bbamcr.2011.08.015, 21925212.
-
(2012)
Biochimica et biophysica acta
, vol.1823
, Issue.1
, pp. 40-48
-
-
Langklotz, S.1
Baumann, U.2
Narberhaus, F.3
-
21
-
-
71749105531
-
Regulation and quality control by Lon-dependent proteolysis
-
10.1016/j.resmic.2009.08.021, 19772918
-
Van Melderen L, Aertsen A. Regulation and quality control by Lon-dependent proteolysis. Research in microbiology 2009, 160(9):645-651. 10.1016/j.resmic.2009.08.021, 19772918.
-
(2009)
Research in microbiology
, vol.160
, Issue.9
, pp. 645-651
-
-
Van Melderen, L.1
Aertsen, A.2
-
23
-
-
64549106859
-
Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes
-
10.1016/j.sbi.2009.02.006, 19362814
-
Striebel F, Kress W, Weber-Ban E. Controlled destruction: AAA+ ATPases in protein degradation from bacteria to eukaryotes. Current opinion in structural biology 2009, 19(2):209-217. 10.1016/j.sbi.2009.02.006, 19362814.
-
(2009)
Current opinion in structural biology
, vol.19
, Issue.2
, pp. 209-217
-
-
Striebel, F.1
Kress, W.2
Weber-Ban, E.3
-
24
-
-
44249125461
-
Rethinking proteasome evolution: two novel bacterial proteasomes
-
10.1007/s00239-008-9075-7, 3235984, 18389302
-
Valas RE, Bourne PE. Rethinking proteasome evolution: two novel bacterial proteasomes. Journal of molecular evolution 2008, 66(5):494-504. 10.1007/s00239-008-9075-7, 3235984, 18389302.
-
(2008)
Journal of molecular evolution
, vol.66
, Issue.5
, pp. 494-504
-
-
Valas, R.E.1
Bourne, P.E.2
-
25
-
-
57149130818
-
Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination
-
10.1186/1745-6150-3-45, 2588565, 18980670
-
Iyer LM, Burroughs AM, Aravind L. Unraveling the biochemistry and provenance of pupylation: a prokaryotic analog of ubiquitination. Biology direct 2008, 3:45. 10.1186/1745-6150-3-45, 2588565, 18980670.
-
(2008)
Biology direct
, vol.3
, pp. 45
-
-
Iyer, L.M.1
Burroughs, A.M.2
Aravind, L.3
-
26
-
-
34547173176
-
Actinomycete-like proteasomes in a Gram-negative bacterium
-
10.1016/j.tim.2007.06.002, 17587582
-
De Mot R. Actinomycete-like proteasomes in a Gram-negative bacterium. Trends in microbiology 2007, 15(8):335-338. 10.1016/j.tim.2007.06.002, 17587582.
-
(2007)
Trends in microbiology
, vol.15
, Issue.8
, pp. 335-338
-
-
De Mot, R.1
-
27
-
-
84866324305
-
Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan
-
10.1128/JB.00696-12, 22815442
-
Fujimura R, Sato Y, Nishizawa T, Oshima K, Kim SW, Hattori M, Kamijo T, Ohta H. Complete genome sequence of Leptospirillum ferrooxidans strain C2-3, isolated from a fresh volcanic ash deposit on the island of Miyake, Japan. Journal of bacteriology 2012, 194(15):4122-4123. 10.1128/JB.00696-12, 22815442.
-
(2012)
Journal of bacteriology
, vol.194
, Issue.15
, pp. 4122-4123
-
-
Fujimura, R.1
Sato, Y.2
Nishizawa, T.3
Oshima, K.4
Kim, S.W.5
Hattori, M.6
Kamijo, T.7
Ohta, H.8
-
28
-
-
0023644679
-
Structure of ubiquitin refined at 1.8 A resolution
-
10.1016/0022-2836(87)90679-6, 3041007
-
Vijay-Kumar S, Bugg CE, Cook WJ. Structure of ubiquitin refined at 1.8 A resolution. Journal of molecular biology 1987, 194(3):531-544. 10.1016/0022-2836(87)90679-6, 3041007.
-
(1987)
Journal of molecular biology
, vol.194
, Issue.3
, pp. 531-544
-
-
Vijay-Kumar, S.1
Bugg, C.E.2
Cook, W.J.3
-
29
-
-
70349467724
-
A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa
-
10.1016/j.febslet.2009.09.020, 19761766
-
Sutter M, Striebel F, Damberger FF, Allain FH, Weber-Ban E. A distinct structural region of the prokaryotic ubiquitin-like protein (Pup) is recognized by the N-terminal domain of the proteasomal ATPase Mpa. FEBS letters 2009, 583(19):3151-3157. 10.1016/j.febslet.2009.09.020, 19761766.
-
(2009)
FEBS letters
, vol.583
, Issue.19
, pp. 3151-3157
-
-
Sutter, M.1
Striebel, F.2
Damberger, F.F.3
Allain, F.H.4
Weber-Ban, E.5
-
30
-
-
68949184714
-
Prokaryotic ubiquitin-like protein pup is intrinsically disordered
-
10.1016/j.jmb.2009.07.018, 2734869, 19607839
-
Chen X, Solomon WC, Kang Y, Cerda-Maira F, Darwin KH, Walters KJ. Prokaryotic ubiquitin-like protein pup is intrinsically disordered. Journal of molecular biology 2009, 392(1):208-217. 10.1016/j.jmb.2009.07.018, 2734869, 19607839.
-
(2009)
Journal of molecular biology
, vol.392
, Issue.1
, pp. 208-217
-
-
Chen, X.1
Solomon, W.C.2
Kang, Y.3
Cerda-Maira, F.4
Darwin, K.H.5
Walters, K.J.6
-
31
-
-
70149094758
-
Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein
-
10.1042/BJ20090738, 19580545
-
Liao S, Shang Q, Zhang X, Zhang J, Xu C, Tu X. Pup, a prokaryotic ubiquitin-like protein, is an intrinsically disordered protein. The Biochemical journal 2009, 422(2):207-215. 10.1042/BJ20090738, 19580545.
-
(2009)
The Biochemical journal
, vol.422
, Issue.2
, pp. 207-215
-
-
Liao, S.1
Shang, Q.2
Zhang, X.3
Zhang, J.4
Xu, C.5
Tu, X.6
-
32
-
-
78549254832
-
Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation
-
10.1038/nsmb.1918, 2988878, 20953180
-
Wang T, Darwin KH, Li H. Binding-induced folding of prokaryotic ubiquitin-like protein on the Mycobacterium proteasomal ATPase targets substrates for degradation. Nat Struct Mol Biol 2010, 17(11):1352-1357. 10.1038/nsmb.1918, 2988878, 20953180.
-
(2010)
Nat Struct Mol Biol
, vol.17
, Issue.11
, pp. 1352-1357
-
-
Wang, T.1
Darwin, K.H.2
Li, H.3
-
33
-
-
77952575956
-
Prokaryotic ubiquitin-like protein provides a two-part degron to Mycobacterium proteasome substrates
-
10.1128/JB.01639-09, 2876485, 20233925
-
Burns KE, Pearce MJ, Darwin KH. Prokaryotic ubiquitin-like protein provides a two-part degron to Mycobacterium proteasome substrates. Journal of bacteriology 2010, 192(11):2933-2935. 10.1128/JB.01639-09, 2876485, 20233925.
-
(2010)
Journal of bacteriology
, vol.192
, Issue.11
, pp. 2933-2935
-
-
Burns, K.E.1
Pearce, M.J.2
Darwin, K.H.3
-
34
-
-
84858039698
-
Activity of the mycobacterial proteasomal ATPase Mpa is reversibly regulated by pupylation
-
10.1074/jbc.M111.331124, 22210775
-
Delley CL, Striebel F, Heydenreich FM, Ozcelik D, Weber-Ban E. Activity of the mycobacterial proteasomal ATPase Mpa is reversibly regulated by pupylation. The Journal of biological chemistry 2012, 287(11):7907-7914. 10.1074/jbc.M111.331124, 22210775.
-
(2012)
The Journal of biological chemistry
, vol.287
, Issue.11
, pp. 7907-7914
-
-
Delley, C.L.1
Striebel, F.2
Heydenreich, F.M.3
Ozcelik, D.4
Weber-Ban, E.5
-
35
-
-
75149113560
-
Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo
-
Imkamp F, Rosenberger T, Striebel F, Keller PM, Amstutz B, Sander P, Weber-Ban E. Deletion of dop in Mycobacterium smegmatis abolishes pupylation of protein substrates in vivo. Mol Microbiol 2010, 75(3):744-754.
-
(2010)
Mol Microbiol
, vol.75
, Issue.3
, pp. 744-754
-
-
Imkamp, F.1
Rosenberger, T.2
Striebel, F.3
Keller, P.M.4
Amstutz, B.5
Sander, P.6
Weber-Ban, E.7
-
36
-
-
77956162428
-
Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis
-
10.1111/j.1365-2958.2010.07276.x, 2975802, 20636328
-
Cerda-Maira FA, Pearce MJ, Fuortes M, Bishai WR, Hubbard SR, Darwin KH. Molecular analysis of the prokaryotic ubiquitin-like protein (Pup) conjugation pathway in Mycobacterium tuberculosis. Mol Microbiol 2010, 77(5):1123-1135. 10.1111/j.1365-2958.2010.07276.x, 2975802, 20636328.
-
(2010)
Mol Microbiol
, vol.77
, Issue.5
, pp. 1123-1135
-
-
Cerda-Maira, F.A.1
Pearce, M.J.2
Fuortes, M.3
Bishai, W.R.4
Hubbard, S.R.5
Darwin, K.H.6
-
37
-
-
77952559910
-
Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate
-
10.1021/ja910546x, 20355727
-
Sutter M, Damberger FF, Imkamp F, Allain FH, Weber-Ban E. Prokaryotic ubiquitin-like protein (Pup) is coupled to substrates via the side chain of its C-terminal glutamate. J Am Chem Soc 2010, 132(16):5610-5612. 10.1021/ja910546x, 20355727.
-
(2010)
J Am Chem Soc
, vol.132
, Issue.16
, pp. 5610-5612
-
-
Sutter, M.1
Damberger, F.F.2
Imkamp, F.3
Allain, F.H.4
Weber-Ban, E.5
-
38
-
-
84866114528
-
Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway
-
Ozcelik D, Barandun J, Schmitz N, Sutter M, Guth E, Damberger FF, Allain FH, Ban N, Weber-Ban E. Structures of Pup ligase PafA and depupylase Dop from the prokaryotic ubiquitin-like modification pathway. Nature communications 2012, 3:1014.
-
(2012)
Nature communications
, vol.3
, pp. 1014
-
-
Ozcelik, D.1
Barandun, J.2
Schmitz, N.3
Sutter, M.4
Guth, E.5
Damberger, F.F.6
Allain, F.H.7
Ban, N.8
Weber-Ban, E.9
-
39
-
-
9644268864
-
Mechanism and function of deubiquitinating enzymes
-
10.1016/j.bbamcr.2004.10.003, 15571815
-
Amerik AY, Hochstrasser M. Mechanism and function of deubiquitinating enzymes. Biochimica et biophysica acta 2004, 1695(1-3):189-207. 10.1016/j.bbamcr.2004.10.003, 15571815.
-
(2004)
Biochimica et biophysica acta
, vol.1695
, Issue.1-3
, pp. 189-207
-
-
Amerik, A.Y.1
Hochstrasser, M.2
-
40
-
-
67650620318
-
Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes
-
10.1146/annurev.biochem.78.082307.091526, 2734102, 19489724
-
Reyes-Turcu FE, Ventii KH, Wilkinson KD. Regulation and cellular roles of ubiquitin-specific deubiquitinating enzymes. Annual review of biochemistry 2009, 78:363-397. 10.1146/annurev.biochem.78.082307.091526, 2734102, 19489724.
-
(2009)
Annual review of biochemistry
, vol.78
, pp. 363-397
-
-
Reyes-Turcu, F.E.1
Ventii, K.H.2
Wilkinson, K.D.3
-
41
-
-
69649103904
-
DUBs at a glance
-
2704873, 19571111
-
Wilkinson KD. DUBs at a glance. Journal of cell science 2009, 122(Pt 14):2325-2329. 2704873, 19571111.
-
(2009)
Journal of cell science
, vol.122
, Issue.PART 14
, pp. 2325-2329
-
-
Wilkinson, K.D.1
-
42
-
-
72949106699
-
Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins
-
10.1039/b917682a, 3268129, 20023723
-
Iyer LM, Abhiman S, Maxwell Burroughs A, Aravind L. Amidoligases with ATP-grasp, glutamine synthetase-like and acetyltransferase-like domains: synthesis of novel metabolites and peptide modifications of proteins. Molecular bioSystems 2009, 5(12):1636-1660. 10.1039/b917682a, 3268129, 20023723.
-
(2009)
Molecular bioSystems
, vol.5
, Issue.12
, pp. 1636-1660
-
-
Iyer, L.M.1
Abhiman, S.2
Maxwell Burroughs, A.3
Aravind, L.4
-
43
-
-
79953005868
-
Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate
-
10.1074/jbc.M110.189282, 3039397, 21081505
-
Guth E, Thommen M, Weber-Ban E. Mycobacterial ubiquitin-like protein ligase PafA follows a two-step reaction pathway with a phosphorylated pup intermediate. The Journal of biological chemistry 2011, 286(6):4412-4419. 10.1074/jbc.M110.189282, 3039397, 21081505.
-
(2011)
The Journal of biological chemistry
, vol.286
, Issue.6
, pp. 4412-4419
-
-
Guth, E.1
Thommen, M.2
Weber-Ban, E.3
-
44
-
-
84868246846
-
Mycobacterium tuberculosis prokaryotic ubiquitin-like protein (Pup) deconjugating enzyme Dop is an unusual aspartate amidase
-
Burns KE, McAllister F, Schwerdtfeger C, Mintseris J, Cerda-Maira F, Noens EE, Wilmanns M, Hubbard SR, Melandri F, Ovaa H, et al. Mycobacterium tuberculosis prokaryotic ubiquitin-like protein (Pup) deconjugating enzyme Dop is an unusual aspartate amidase. The Journal of biological chemistry 2012,
-
(2012)
The Journal of biological chemistry
-
-
Burns, K.E.1
McAllister, F.2
Schwerdtfeger, C.3
Mintseris, J.4
Cerda-Maira, F.5
Noens, E.E.6
Wilmanns, M.7
Hubbard, S.R.8
Melandri, F.9
Ovaa, H.10
-
45
-
-
0033614454
-
Species variation in ATP-dependent protein degradation: protease profiles differ between mycobacteria and protease functions differ between Mycobacterium smegmatis and Escherichia coli
-
10.1016/S0378-1119(99)00087-6, 10231573
-
Knipfer N, Seth A, Roudiak SG, Shrader TE. Species variation in ATP-dependent protein degradation: protease profiles differ between mycobacteria and protease functions differ between Mycobacterium smegmatis and Escherichia coli. Gene 1999, 231(1-2):95-104. 10.1016/S0378-1119(99)00087-6, 10231573.
-
(1999)
Gene
, vol.231
, Issue.1-2
, pp. 95-104
-
-
Knipfer, N.1
Seth, A.2
Roudiak, S.G.3
Shrader, T.E.4
-
46
-
-
0030877378
-
Inactivation of the 20S proteasome in Mycobacterium smegmatis
-
10.1046/j.1365-2958.1997.4721837.x, 9282749
-
Knipfer N, Shrader TE. Inactivation of the 20S proteasome in Mycobacterium smegmatis. Mol Microbiol 1997, 25(2):375-383. 10.1046/j.1365-2958.1997.4721837.x, 9282749.
-
(1997)
Mol Microbiol
, vol.25
, Issue.2
, pp. 375-383
-
-
Knipfer, N.1
Shrader, T.E.2
-
47
-
-
24944478312
-
Inactivation of the 20S proteasome in Streptomyces lividans and its influence on the production of heterologous proteins
-
Hong B, Wang L, Lammertyn E, Geukens N, Van Mellaert L, Li Y, Anne J. Inactivation of the 20S proteasome in Streptomyces lividans and its influence on the production of heterologous proteins. Microbiology 2005, 151(Pt 9):3137-3145.
-
(2005)
Microbiology
, vol.151
, Issue.PART 9
, pp. 3137-3145
-
-
Hong, B.1
Wang, L.2
Lammertyn, E.3
Geukens, N.4
Van Mellaert, L.5
Li, Y.6
Anne, J.7
-
48
-
-
34547168773
-
Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins
-
10.1007/s00203-007-0243-8, 17486317
-
De Mot R, Schoofs G, Nagy I. Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins. Archives of microbiology 2007, 188(3):257-271. 10.1007/s00203-007-0243-8, 17486317.
-
(2007)
Archives of microbiology
, vol.188
, Issue.3
, pp. 257-271
-
-
De Mot, R.1
Schoofs, G.2
Nagy, I.3
-
49
-
-
33750380805
-
Deletion of a Mycobacterium tuberculosis proteasomal ATPase homologue gene produces a slow-growing strain that persists in host tissues
-
10.1086/508288, 17041849
-
Lamichhane G, Raghunand TR, Morrison NE, Woolwine SC, Tyagi S, Kandavelou K, Bishai WR. Deletion of a Mycobacterium tuberculosis proteasomal ATPase homologue gene produces a slow-growing strain that persists in host tissues. The Journal of infectious diseases 2006, 194(9):1233-1240. 10.1086/508288, 17041849.
-
(2006)
The Journal of infectious diseases
, vol.194
, Issue.9
, pp. 1233-1240
-
-
Lamichhane, G.1
Raghunand, T.R.2
Morrison, N.E.3
Woolwine, S.C.4
Tyagi, S.5
Kandavelou, K.6
Bishai, W.R.7
-
50
-
-
0347091999
-
M. tuberculosis persistence, latency, and drug tolerance
-
Gomez JE, McKinney JD. M. tuberculosis persistence, latency, and drug tolerance. Tuberculosis (Edinb) 2004, 84(1-2):29-44.
-
(2004)
Tuberculosis (Edinb)
, vol.84
, Issue.1-2
, pp. 29-44
-
-
Gomez, J.E.1
McKinney, J.D.2
-
51
-
-
0043142536
-
Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages: Insights into the Phagosomal Environment
-
10.1084/jem.20030846, 2194186, 12953091
-
Schnappinger D, Ehrt S, Voskuil MI, Liu Y, Mangan JA, Monahan IM, Dolganov G, Efron B, Butcher PD, Nathan C, et al. Transcriptional Adaptation of Mycobacterium tuberculosis within Macrophages: Insights into the Phagosomal Environment. The Journal of experimental medicine 2003, 198(5):693-704. 10.1084/jem.20030846, 2194186, 12953091.
-
(2003)
The Journal of experimental medicine
, vol.198
, Issue.5
, pp. 693-704
-
-
Schnappinger, D.1
Ehrt, S.2
Voskuil, M.I.3
Liu, Y.4
Mangan, J.A.5
Monahan, I.M.6
Dolganov, G.7
Efron, B.8
Butcher, P.D.9
Nathan, C.10
-
52
-
-
0345276636
-
Life on the inside for Mycobacterium tuberculosis
-
10.1038/nm1103-1356, 14595429
-
McKinney JD, Gomez JE. Life on the inside for Mycobacterium tuberculosis. Nature medicine 2003, 9(11):1356-1357. 10.1038/nm1103-1356, 14595429.
-
(2003)
Nature medicine
, vol.9
, Issue.11
, pp. 1356-1357
-
-
McKinney, J.D.1
Gomez, J.E.2
-
53
-
-
0042140672
-
Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program
-
10.1084/jem.20030205, 2194188, 12953092
-
Voskuil MI, Schnappinger D, Visconti KC, Harrell MI, Dolganov GM, Sherman DR, Schoolnik GK. Inhibition of respiration by nitric oxide induces a Mycobacterium tuberculosis dormancy program. The Journal of experimental medicine 2003, 198(5):705-713. 10.1084/jem.20030205, 2194188, 12953092.
-
(2003)
The Journal of experimental medicine
, vol.198
, Issue.5
, pp. 705-713
-
-
Voskuil, M.I.1
Schnappinger, D.2
Visconti, K.C.3
Harrell, M.I.4
Dolganov, G.M.5
Sherman, D.R.6
Schoolnik, G.K.7
-
54
-
-
75749130245
-
Expansion of the mycobacterial "PUPylome"
-
10.1039/b916104j, 2846642, 20094657
-
Watrous J, Burns K, Liu WT, Patel A, Hook V, Bafna V, Barry CE, Bark S, Dorrestein PC. Expansion of the mycobacterial "PUPylome". Molecular bioSystems 2010, 6(2):376-385. 10.1039/b916104j, 2846642, 20094657.
-
(2010)
Molecular bioSystems
, vol.6
, Issue.2
, pp. 376-385
-
-
Watrous, J.1
Burns, K.2
Liu, W.T.3
Patel, A.4
Hook, V.5
Bafna, V.6
Barry, C.E.7
Bark, S.8
Dorrestein, P.C.9
-
55
-
-
77957239114
-
Proteome-wide identification of mycobacterial pupylation targets
-
2925521, 20631680
-
Poulsen C, Akhter Y, Jeon AH, Schmitt-Ulms G, Meyer HE, Stefanski A, Stuhler K, Wilmanns M, Song YH. Proteome-wide identification of mycobacterial pupylation targets. Molecular systems biology 2010, 6:386. 2925521, 20631680.
-
(2010)
Molecular systems biology
, vol.6
, pp. 386
-
-
Poulsen, C.1
Akhter, Y.2
Jeon, A.H.3
Schmitt-Ulms, G.4
Meyer, H.E.5
Stefanski, A.6
Stuhler, K.7
Wilmanns, M.8
Song, Y.H.9
-
56
-
-
77649151706
-
Prokaryotic ubiquitin-like protein (Pup) proteome of Mycobacterium tuberculosis [corrected]
-
10.1371/journal.pone.0008589, 2797603, 20066036
-
Festa RA, McAllister F, Pearce MJ, Mintseris J, Burns KE, Gygi SP, Darwin KH. Prokaryotic ubiquitin-like protein (Pup) proteome of Mycobacterium tuberculosis [corrected]. PloS one 2010, 5(1):e8589. 10.1371/journal.pone.0008589, 2797603, 20066036.
-
(2010)
PloS one
, vol.5
, Issue.1
-
-
Festa, R.A.1
McAllister, F.2
Pearce, M.J.3
Mintseris, J.4
Burns, K.E.5
Gygi, S.P.6
Darwin, K.H.7
-
57
-
-
78650251930
-
A novel copper-responsive regulon in Mycobacterium tuberculosis
-
10.1111/j.1365-2958.2010.07431.x, 3052634, 21166899
-
Festa RA, Jones MB, Butler-Wu S, Sinsimer D, Gerads R, Bishai WR, Peterson SN, Darwin KH. A novel copper-responsive regulon in Mycobacterium tuberculosis. Mol Microbiol 2011, 79(1):133-148. 10.1111/j.1365-2958.2010.07431.x, 3052634, 21166899.
-
(2011)
Mol Microbiol
, vol.79
, Issue.1
, pp. 133-148
-
-
Festa, R.A.1
Jones, M.B.2
Butler-Wu, S.3
Sinsimer, D.4
Gerads, R.5
Bishai, W.R.6
Peterson, S.N.7
Darwin, K.H.8
-
58
-
-
70349647606
-
Nitazoxanide kills replicating and nonreplicating Mycobacterium tuberculosis and evades resistance
-
10.1021/jm9010719, 19736929
-
de Carvalho LP, Lin G, Jiang X, Nathan C. Nitazoxanide kills replicating and nonreplicating Mycobacterium tuberculosis and evades resistance. Journal of medicinal chemistry 2009, 52(19):5789-5792. 10.1021/jm9010719, 19736929.
-
(2009)
Journal of medicinal chemistry
, vol.52
, Issue.19
, pp. 5789-5792
-
-
de Carvalho, L.P.1
Lin, G.2
Jiang, X.3
Nathan, C.4
-
59
-
-
70349658267
-
Inhibitors selective for mycobacterial versus human proteasomes
-
10.1038/nature08357, 3172082, 19759536
-
Lin G, Li D, de Carvalho LP, Deng H, Tao H, Vogt G, Wu K, Schneider J, Chidawanyika T, Warren JD, et al. Inhibitors selective for mycobacterial versus human proteasomes. Nature 2009, 461(7264):621-626. 10.1038/nature08357, 3172082, 19759536.
-
(2009)
Nature
, vol.461
, Issue.7264
, pp. 621-626
-
-
Lin, G.1
Li, D.2
de Carvalho, L.P.3
Deng, H.4
Tao, H.5
Vogt, G.6
Wu, K.7
Schneider, J.8
Chidawanyika, T.9
Warren, J.D.10
-
60
-
-
50349103195
-
A philosophy of anti-infectives as a guide in the search for new drugs for tuberculosis
-
Nathan C, Gold B, Lin G, Stegman M, de Carvalho LP, Vandal O, Venugopal A, Bryk R. A philosophy of anti-infectives as a guide in the search for new drugs for tuberculosis. Tuberculosis (Edinb) 2008, 88(Suppl 1):S25-33.
-
(2008)
Tuberculosis (Edinb)
, vol.88
, Issue.SUPPL. 1
-
-
Nathan, C.1
Gold, B.2
Lin, G.3
Stegman, M.4
de Carvalho, L.P.5
Vandal, O.6
Venugopal, A.7
Bryk, R.8
-
61
-
-
0242578620
-
A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood
-
10.1080/10635150390235520, 14530136
-
Guindon S, Gascuel O. A simple, fast, and accurate algorithm to estimate large phylogenies by maximum likelihood. Systematic biology 2003, 52(5):696-704. 10.1080/10635150390235520, 14530136.
-
(2003)
Systematic biology
, vol.52
, Issue.5
, pp. 696-704
-
-
Guindon, S.1
Gascuel, O.2
-
62
-
-
33845873289
-
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
-
10.1093/bioinformatics/btl529, 17050570
-
Letunic I, Bork P. Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation. Bioinformatics 2007, 23(1):127-128. 10.1093/bioinformatics/btl529, 17050570.
-
(2007)
Bioinformatics
, vol.23
, Issue.1
, pp. 127-128
-
-
Letunic, I.1
Bork, P.2
-
63
-
-
3042666256
-
MUSCLE: multiple sequence alignment with high accuracy and high throughput
-
10.1093/nar/gkh340, 390337, 15034147
-
Edgar RC. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic acids research 2004, 32(5):1792-1797. 10.1093/nar/gkh340, 390337, 15034147.
-
(2004)
Nucleic acids research
, vol.32
, Issue.5
, pp. 1792-1797
-
-
Edgar, R.C.1
-
64
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
10.1093/oxfordjournals.molbev.a026334, 10742046
-
Castresana J. Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 2000, 17(4):540-552. 10.1093/oxfordjournals.molbev.a026334, 10742046.
-
(2000)
Mol Biol Evol
, vol.17
, Issue.4
, pp. 540-552
-
-
Castresana, J.1
|