Actinomycete-like proteasomes in a Gram-negative bacterium

Trends in Microbiology

Volumn 15, Issue 8, 2007, Pages 335-338

  De Mot, René ^a  

^a Faculty of Bioscience Engineering   (Belgium)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEASOME;

ACID MINE DRAINAGE; ACIDITY; BACTERIAL GENE; BACTERIUM IDENTIFICATION; BIOFILM; GENETIC VARIABILITY; GRAM NEGATIVE BACTERIUM; HORIZONTAL GENE TRANSFER; LEPTOSPIRILLUM GROUP II; NITROSPIRAE; NONHUMAN; PHYLUM; PRIORITY JOURNAL; PROTEOMICS; SHORT SURVEY;

ACTINOBACTERIA; BACTERIAL PROTEINS; BIOFILMS; ECOSYSTEM; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; GENOMICS; GRAM-NEGATIVE BACTERIA; HYDROGEN-ION CONCENTRATION; PROTEASOME ENDOPEPTIDASE COMPLEX; PROTEOME;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); LEPTOSPIRILLUM; NEGIBACTERIA; NITROSPIRAE; PROKARYOTA;

EID: 34547173176     PISSN: 0966842X     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tim.2007.06.002     Document Type: Short Survey

References (25)

1. Tyson G.W., et al. Community structure and metabolism through reconstruction of microbial genomes from the environment. Nature 428 (2004) 37-43
2. Ram R.J., et al. Community proteomics of a natural microbial biofilm. Science 308 (2005) 1915-1920
3. Lo I., et al. Strain-resolved community proteomics reveals recombining genomes of acidophilic bacteria. Nature 446 (2007) 537-541
4. Voges D., et al. The 26S proteasome: a molecular machine designed for controlled proteolysis. Annu. Rev. Biochem. 68 (1999) 1015-1068
5. Smith D.M., et al. Proteasomes and their associated ATPases: a destructive combination. J. Struct. Biol. 156 (2006) 72-83
6. Tamura T., et al. The first characterization of a eubacterial proteasome: the 20S complex of Rhodococcus. Curr. Biol. 5 (1995) 766-774
7. Nagy I., et al. The 20S proteasome of Streptomyces coelicolor. J. Bacteriol. 180 (1998) 5448-5453
8. Pouch M.N., et al. Characterization of the 20S proteasome from the actinomycete Frankia. Mol. Microbiol. 35 (2000) 368-377
9. Lin G., et al. Mycobacterium tuberculosis prcBA genes encode a gated proteasome with broad oligopeptide specificity. Mol. Microbiol. 59 (2006) 1405-1416
10. Kwon Y.D., et al. Crystal structures of the Rhodococcus proteasome with and without its pro-peptides: implications for the role of the pro-peptide in proteasome assembly. J. Mol. Biol. 335 (2004) 233-245
11. Hu G., et al. Structure of the Mycobacterium tuberculosis proteasome and mechanism of inhibition by a peptidyl boronate. Mol. Microbiol. 59 (2006) 1417-1428
12. Wolf S., et al. Characterization of ARC, a divergent member of the AAA ATPase family from Rhodococcus erythropolis. J. Mol. Biol. 277 (1998) 13-25
13. Darwin K.H., et al. Characterization of a Mycobacterium tuberculosis proteasomal ATPase homologue. Mol. Microbiol. 55 (2005) 561-571
14. Darwin K.H., et al. The proteasome of Mycobacterium tuberculosis is required for resistance to nitric oxide. Science 302 (2003) 1963-1966
15. Lamichhane G., et al. Deletion of a Mycobacterium tuberculosis proteasomal ATPase homologue gene produces a slow-growing strain that persists in host tissues. J. Infect. Dis. 194 (2006) 1233-1240
16. Zhang X., et al. The N-terminal coiled coil of the Rhodococcus erythropolis ARC AAA ATPase is neither necessary for oligomerization nor nucleotide hydrolysis. J. Struct. Biol. 146 (2004) 155-165
17. Pearce M.J., et al. Identification of substrates of the Mycobacterium tuberculosis proteasome. EMBO J. 25 (2006) 5423-5432
18. De Mot R., et al. Proteome analysis of Streptomyces coelicolor mutants affected in the proteasome system reveals changes in stress-responsive proteins. Arch. Microbiol. (2007) 10.1007/s00203-007-0243-8
19. Bond P.L., et al. Phylogeny of microorganisms populating a thick, subaerial, predominantly lithotrophic biofilm at an extreme acid mine drainage site. Appl. Environ. Microbiol. 66 (2000) 3842-3849
20. Parro V., et al. Analysis of environmental transcriptomes by DNA microarrays. Environ. Microbiol. 9 (2007) 453-464
21. Gille C., et al. A comprehensive view on proteasomal sequences: implications for the evolution of the proteasome. J. Mol. Biol. 326 (2003) 1437-1448
22. Volker C., and Lupas A.N. Molecular evolution of proteasomes. Curr. Top. Microbiol. Immunol. 268 (2002) 1-22
23. Cavalier-Smith T. Rooting the tree of life by transition analyses. Biol. Direct 1 (2006) 19
24. Butler S.M., et al. Self-compartmentalized bacterial proteases and pathogenesis. Mol. Microbiol. 60 (2006) 553-562
25. Festa R.A., et al. Characterization of the proteasome accessory factor (paf) operon in Mycobacterium tuberculosis. J. Bacteriol. 189 (2007) 3044-3050