Heterosis: Emerging ideas about hybrid vigour

Journal of Experimental Botany

Volumn 63, Issue 18, 2012, Pages 6309-6314

  Baranwal, Vinay Kumar ^a   Mikkilineni, Venugopal ^b   Zehr, Usha Barwale ^b   Tyagi, Akhilesh K ^c   Kapoor, Sanjay ^a  

^a UNIVERSITY OF DELHI   (India)

^b Maharashtra Hybrid Seeds Company Limited   (India)

^c NATIONAL INSTITUTE OF PLANT GENOME RESEARCH   (India)

Author keywords

Circadian clock; dominance; energy use efficiency; growth and development; over dominance; yield

Indexed keywords

ENERGY METABOLISM; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC ASSOCIATION; GENETIC EPIGENESIS; GENETICS; HETEROSIS; METABOLISM; PLANT; REVIEW;

ENERGY METABOLISM; EPIGENESIS, GENETIC; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENOME-WIDE ASSOCIATION STUDY; HYBRID VIGOR; PLANTS;

ANIMALIA; ZEA MAYS;

EID: 84870026365     PISSN: 00220957     EISSN: 14602431     Source Type: Journal    
DOI: 10.1093/jxb/ers291     Document Type: Review

References (50)

1. Ashikari M, Sakakibara H, Lin S, Yamamoto T, Takashi T, Nishimura A, Angeles ER, Qian Q, Kitano H, Matsuoka M. 2005. Cytokinin oxidase regulates rice grain production. Science 309, 741-745. (Pubitemid 41077314)
2. Auger DL, Gray AD, Ream TS, Kato A, Coe Jr EH, Birchler JA. 2005. Nonadditive gene expression in diploid and triploid hybrids of maize. Genetics 169, 389-397. (Pubitemid 40239179)
3. Bao J, Lee S, Chen C, et al. 2005. Serial analysis of gene expression study of a hybrid rice strain (LYP9) and its parental cultivars. Plant Physiology 138, 1216-1231. (Pubitemid 43142071)
4. Birchler JA, Yao H, Chudalayandi S, Vaiman D, Veitia RA. 2010. Heterosis. The Plant Cell 22, 2105-2112.
5. Chen ZJ. 2010. Molecular mechanisms of polyploidy and hybrid vigor. Trends in Plant Science 15, 57-71.
6. Comings D, MacMurray JP. 2000. Molecular heterosis: A review. Molecular Genetics and Metabolism 71, 19-31.
7. Ding D, Wang Y, Han M, Fu Z, Li W, Liu Z, Hu Y, Tang J. 2012. MicroRNA transcriptomic analysis of heterosis during maize seed germination. PloS One 7, e39578.
8. Frisch M, Thiemann A, Fu J, Schrag TA, Scholten S, Melchinger AE. 2010. Transcriptome-based distance measures for grouping of germplasm and prediction of hybrid performance in maize. Theoretical and Applied Genetics 120, 441-450.
9. Fujimoto R, Taylor JM, Shirasawa S, Peacock WJ, Dennis ES. 2012. Heterosis of Arabidopsis hybrids between C24 and Col is associated with increased photosynthesis capacity. Proceedings of the National Academy of Sciences, USA 109, 7109-7114.
10. Gang Wei, Yong Taoa, Guozhen Liuc, et al. 2009. A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proceedings of the National Academy of Sciences, USA 106, 7695-7701.
11. Ge X, Chen W, Song S, Wang W, Hu S, Yu J. 2008. Transcriptomic profiling of mature embryo from an elite super-hybrid rice LYP9 and its parental lines. BMC Plant Biology 8, 114.
12. Gibson G, Riley-Berger R, Harshman L, Kopp A, Vacha S, Nuzhdin S, Wayne M. 2004. Extensive sex-specific nonadditivity of gene expression in Drosophila melanogaster. Genetics 167, 1791-1799. (Pubitemid 39265915)
13. Goff SA. 2011. A unifying theory for general multigenic heterosis: Energy efficiency, protein metabolism, and implications for molecular breeding. New Phytologist 189, 923-937.
14. Greaves IK, Groszmann M, Ying H, Taylor JM, Peacock WJ, Dennis ES. 2012. Trans chromosomal methylation in Arabidopsis hybrids. Proceedings of the National Academy of Sciences, USA 109, 3570-3575.
15. Groszmann M, Greaves IK, Albertyn ZI, Scofield GN, Peacock WJ, Dennis ES. 2011. Changes in 24-nt siRNA levels in Arabidopsis hybrids suggest an epigenetic contribution to hybrid vigor. Proceedings of the National Academy of Sciences, USA 108, 2617-2622.
16. Guo M, Rupe MA, Danilevskaya ON, Yang X, Hu Z. 2003. Genome-wide mRNA profiling reveals heterochronic allelic variation and a new imprinted gene in hybrid maize endosperm. The Plant Journal 36, 30-44. (Pubitemid 37231655)
17. Guo M, Rupe MA, Yang X, Crasta O, Zinselmeier C, Smith OS, Bowen B. 2006. Genome-wide transcript analysis of maize hybrids: Allelic additive gene expression and yield heterosis. Theoretical and Applied Genetics 113, 831-845. (Pubitemid 44272974)
18. Guo M, Rupe MA, Zinselmeier C, Habben J, Bowen BA, Smith OS. 2004. Allelic variation of gene expression in maize hybrids. The Plant Cell 16, 1707-1716. (Pubitemid 38908770)
19. Ha M, Lu J, Tian L, Ramachandran V, Kasschau KD, Chapman EJ, Carrington JC, Chen X, Wang X-J, Chen ZJ. 2009. Small RNAs serve as a genetic buffer against genomic shock in Arabidopsis interspecific hybrids and allopolyploids. Proceedings of the National Academy of Sciences, USA 106, 17835-17840.
20. Hauben M, Haesendonckx B, Standaert E, et al. 2009. Energy use efficiency is characterized by an epigenetic component that can be directed through artificial selection to increase yield. Proceedings of the National Academy of Sciences, USA 106, 20109-20114.
21. He G, Zhu X, Elling AA, et al. 2010. Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids. The Plant Cell 22, 17-33.
22. Hedgecock D, Lin JZ, DeCola S, Haudenschild CD, Meyer E, Manahan DT, Bowen B. 2007. Transcriptomic analysis of growth heterosis in larval Pacific oysters (Crassostrea gigas). Proceedings of the National Academy of Sciences, USA 104, 2313-2318. (Pubitemid 46391394)
23. Hochholdinger F, Hoecker N. 2007. Towards the molecular basis of heterosis. Trends in Plant Science 12, 427-432. (Pubitemid 47362796)
24. Hoecker N, Keller B, Muthreich N, Chollet D, Descombes P, Piepho HP, Hochholdinger F. 2008a. Comparison of maize (Zea mays L.) F1-hybrid and parental inbred line primary root transcriptomes suggests organ-specific patterns of non-additive gene expression and conserved expression trends. Genetics 179, 1275-1283.
25. Hoecker N, Lamkemeyer T, Sarholz B, et al. 2008b. Analysis of non-additive protein accumulation in young primary roots of a maize (Zea mays L.) F1-hybrid compared to its parental inbred lines. Proteomics 8, 3882-3894.
26. Huang Y, Li L, Chen Y, Li X, Xu C, Wang S, Zhang Q. 2006a. Comparative analysis of gene expression at early seedling stage between a rice hybrid and its parents using a cDNA microarray of 9198 uni-sequences. Science in China Series C: Life Sciences 49, 519-529. (Pubitemid 46155716)
27. Huang Y, Zhang L, Zhang J, Yuan D, Xu C, Li X, Zhou D, Wang S, Zhang Q. 2006b. Heterosis and polymorphisms of gene expression in an elite rice hybrid as revealed by a microarray analysis of 9198 unique ESTs. Plant Molecular Biology 62, 579-591. (Pubitemid 44652251)
28. Jahnke S, Sarholz B, Thiemann A, Kuhr V, Gutierrez-Marcos JF, Geiger HH, Piepho HP, Scholten S. 2010. Heterosis in early seed development: A comparative study of F1 embryo and endosperm tissues 6 days after fertilization . Theoretical and Applied Genetics 120, 389-400.
29. Kollipara KP, Saab IN, Wych RD, Lauer MJ, Singletary GW. 2002. Expression profiling of reciprocal maize hybrids divergent for cold germination and desiccation tolerance. Plant Pphysiology 129, 974-992. (Pubitemid 34805308)
30. Krieger U, Lippman ZB, Zamir D. 2010. The flowering gene SINGLE FLOWER TRUSS drives heterosis for yield in tomato. Nature Genetics 42, 459-463.
31. Li M, Tang D, Wang K, Wu X, Lu L, Yu H, Gu M, Yan C, Cheng Z. 2011. Mutations in the F-box gene LARGER PANICLE improve the panicle architecture and enhance the grain yield in rice. Plant Biotechnology Journal 9, 1002-1013.
32. Lippman Z, Zamir D. 2007. Heterosis: Revisiting the magic. Trends in Genetics 23, 60-66. (Pubitemid 46161217)
33. Mao H, Sun S, Yao J, Wang C, Yu S, Xu C, Li X, Zhang Q. 2010. Linking differential domain functions of the GS3 protein to natural variation of grain size in rice. Proceedings of the National Academy of Sciences, USA 107, 19579-19584.
34. McClintock B. 1984. The significance of responses of the genome to challenge. Science 226, 792-801. (Pubitemid 15200674)
35. Meyer RC, Witucka-Wall H, Becher M, et al. 2012. Heterosis manifestation during early Arabidopsis seedling development is characterized by intermediate gene expression and enhanced metabolic activity in the hybrids. The Plant Journal 71, 669-683.
36. Meyer S, Pospisil H, Scholten S. 2007. Heterosis associated gene expression in maize embryos 6 days after fertilization exhibits additive, dominant and overdominant pattern. Plant Molecular Biology 63, 381-391. (Pubitemid 46204481)
37. Miura K, Ikeda M, Matsubara A, Song XJ, Ito M, Asano K, Matsuoka M, Kitano H, Ashikari M. 2010. OsSPL14 promotes panicle branching and higher grain productivity in rice. Nature Genetics 42, 545-549.
38. Ni Z, Kim E-D, Ha M, Lackey E, Liu J, Zhang Y, Sun Q, Chen ZJ. 2009. Altered circadian rhythms regulate growth vigour in hybrids and allopolyploids. Nature 457, 327-331.
39. Riddle NC, Jiang H, An L, Doerge RW, Birchler JA. 2010. Gene expression analysis at the intersection of ploidy and hybridity in maize. Theoretical and Applied Genetics 120, 341-353.
40. Shen H, He H, Li J, et al. 2012. Genome-wide analysis of DNA methylation and gene expression changes in two Arabidopsis ecotypes and their reciprocal hybrids. The Plant Cell 24, 875-892.
41. Song X, Ni Z, Yao Y, Xie C, Li Z, Wu H, Zhang Y, Sun Q. 2007. Wheat (Triticum aestivum L.) root proteome and differentially expressed root proteins between hybrid and parents. Proteomics 7, 3538-3557. (Pubitemid 47597676)
42. Springer NM, Stupar RM. 2007. Allelic variation and heterosis in maize: How do two halves make more than a whole? Genome Research 17, 264-275. (Pubitemid 46376735)
43. Stupar RM, Gardiner JM, Oldre AG, Haun WJ, Chandler VL, Springer NM. 2008. Gene expression analyses in maize inbreds and hybrids with varying levels of heterosis. BMC Plant Biology 8, 33.
44. Stupar RM, Springer NM. 2006. Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression patterns in the F1 hybrid. Genetics 173, 2199-2210. (Pubitemid 44285696)
45. Swanson-Wagner RA, Jia Y, DeCook R, Borsuk LA, Nettleton D, Schnable PS. 2006. All possible modes of gene action are observed in a global comparison of gene expression in a maize F1 hybrid and its inbred parents. Proceedings of the National Academy of Sciences, USA 103, 6805-6810.
46. Tamaki S, Matsuo S, Wong HL, Yokoi S, Shimamoto K. 2007. Hd3a protein is a mobile flowering signal in rice. Science 316, 1033-1036. (Pubitemid 46799491)
47. Uzarowska A, Keller B, Piepho HP, Schwarz G, Ingvardsen C, Wenzel G, Lubberstedt T. 2007. Comparative expression profiling in meristems of inbred-hybrid triplets of maize based on morphological investigations of heterosis for plant height. Plant Molecular Biology 63, 21-34. (Pubitemid 44950229)
48. Wei G, Tao Y, Liu G, et al. 2009. A transcriptomic analysis of superhybrid rice LYP9 and its parents. Proceedings of the National Academy of Sciences, USA 106, 7695-7701.
49. Xiong LZ, Xu CG, Saghai Maroof MA, Zhang Q. 1999. Patterns of cytosine methylation in an elite rice hybrid and its parental lines, detected by a methylation-sensitive amplification polymorphism technique. Molecular and General Genetics 261, 439-446. (Pubitemid 29185033)
50. Zhang HY, Hang H, Liang-Bi C, et al. 2008. A genome-wide transcription analysis reveals a close correlation of promoter INDEL polymorphism and heterotic gene expression in rice hybrids. Molecular Plant 1, 720-731.