Screening and confirmation of microRNA markers for forensic body fluid identification

Forensic Science International: Genetics

Volumn 7, Issue 1, 2013, Pages 116-123

  Wang, Zheng ^a   Zhang, Ji ^a   Luo, Haibo ^a   Ye, Yi ^a   Yan, Jing ^a   Hou, Yiping ^a  

^a SICHUAN UNIVERSITY   (China)

Author keywords

Body fluid identification; Forensic medicine; miRNA; miRNA profiling; RT qPCR; TaqMan

Indexed keywords

MICRORNA; MICRORNA 124A; MICRORNA 138 2; MICRORNA 16; MICRORNA 214; MICRORNA 486; MICRORNA 888; MICRORNA 891A; UNCLASSIFIED DRUG;

ADULT; ARTICLE; BLOOD STAIN; BODY FLUID; COMPUTER PROGRAM; CONTROLLED STUDY; FORENSIC IDENTIFICATION; GENE; GENE EXPRESSION; HUMAN; LABORATORY TEST; LIMIT OF DETECTION; MENSTRUATION; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; RNU44 GENE; RNU48 GENE; SALIVA; SCREENING TEST; SEMEN ANALYSIS; SENSITIVITY ANALYSIS; SPERM; U6 GENE; U6B GENE; VAGINAL SECRETION; VALIDATION STUDY; VENOUS BLOOD;

BODY FLUIDS; FORENSIC GENETICS; GENETIC MARKERS; HUMANS; MICRORNAS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION;

EID: 84869493444     PISSN: 18724973     EISSN: 18780326     Source Type: Journal    
DOI: 10.1016/j.fsigen.2012.07.006     Document Type: Article

References (40)

1. R.E. Gaensslen Sourcebook in Forensic Serology, Immunology, and Biochemistry 1983 U.S. Department of Justice Washington, DC
2. A.C. Ponce, and F.A.V. Pascual Critical revision of presumptive tests for bloodstains Forensic Sci. Commun. 1 2 1999 1 15
3. N. Khaldi, A. Miras, K. Botti, L. Benali, and S. Gromb Evaluation of three rapid detection methods for the forensic identification of seminal fluid in rape cases J. Forensic Sci. 49 2004 749 753
4. S.S. Tobe, N. Watson, and N.N. Daéid Evaluation of six presumptive tests for blood, their specificity, sensitivity, and effect on high molecular-weight DNA J. Forensic Sci. 52 2007 102 109
5. J.R. Mayers, and W.K. Adkins Comparison of modern techniques for saliva screening J. Forensic Sci. 53 2008 862 867
6. J. Juusola, and J. Ballantyne Messenger RNA profiling: a prototype method to supplant conventional methods for body fluid identification Forensic Sci. Int. 135 2003 85 96
7. J. Juusola, and J. Ballantyne Multiplex mRNA profiling for the identification of body fluids Forensic Sci. Int. 152 2005 1 12
8. J. Juusola, and Ballantyne mRNA profiling for body fluid identification by multiplex quantitative RT-PCR J. Forensic Sci. 52 2007 1252 1262
9. M. Setzer, J. Juusola, and J. Ballantyne Recovery and stability of RNA in vaginal swabs and blood, semen, and saliva stains J. Forensic Sci. 53 2008 296 305
10. D. Zubakov, M. Kokshoorn, A. Kloosterman, and M. Kayser New markers for old stains: stable mRNA markers for blood and saliva identification from up to 16-year-old stains Int. J. Legal Med. 123 2009 71 74
11. D.P. Bartel MicroRNAs: genomics, biogenesis, mechanism, and function Cell 116 2004 281 297
12. V.N. Kim MicroRNA biogenesis: coordinated cropping and dicing Nat. Rev. Mol. Cell Biol. 6 2005 376 385
13. V.N. Kim, J. Han, and M.C. Siomi Biogenesis of small RNAs in animals Nat. Rev. Mol. Cell Biol. 10 2009 126 139
14. S. Gu, L. Jin, F. Zhang, P. Sarnow, and M.A. Kay Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs Nat. Struct. Mol. Biol. 16 2009 144 150
15. T.M. Rana Illuminating the silence: understanding the structure and function of small RNAs Nat. Rev. Mol. Cell Biol. 8 2007 23 36
16. S.F. Tavazoie, C. Alarcón, T. Oskarsson, D. Padua, Q. Wang, and P.D. Bos Endogenous human microRNAs that suppress breast cancer metastasis Nature 451 2008 147 152
17. H.W. Hwang, and J.T. Mendell MicroRNAs in cell proliferation, cell death, and tumorigenesis Br. J. Cancer 94 2006 776 780
18. P. Sood, A. Krek, M. Zavolan, G. Macino, and N. Rajewsky Cell-type-specific signatures of microRNAs on target mRNA expression Proc. Natl. Acad. Sci. U. S. A. 103 2006 2746 2751
19. Y. Liang, D. Ridzon, L. Wong, and C. Chen Characterization of microRNA expression profiles in normal human tissues BMC Genomics 8 2007 166
20. K.R. Leite, J.M. Canavez, S.T. Reis, A.H. Tomiyama, C.B. Piantino, and A. Sañudo miRNA analysis of prostate cancer by quantitative real time PCR: comparison between formalin-fixed paraffin embedded and fresh-frozen tissue Urol. Oncol. 19 2011 533 537
21. A.B. Hui, W. Shi, P.C. Boutros, N. Miller, M. Pintilie, and T. Fyles Robust global micro-RNA profiling with formalin-fixed paraffin-embedded breast cancer tissues Lab. Invest. 89 2009 597 606
22. E.K. Hanson, H. Lubenow, and J. Ballantyne Identification of forensically relevant body fluids using a panel of differentially expressed microRNAs Anal. Biochem. 387 2009 303 314
23. D. Zubakov, A.W. Boersma, Y. Choi, P.F.V. Kuijk, E.A. Wiemer, and M. Kayser MicroRNA markers for forensic body fluid identification obtained from microarray screening and quantitative RT-PCR confirmation Int. J. Legal Med. 124 2010 217 226
24. C. Courts, and B. Madea Specific micro-RNA signatures for the detection of saliva and blood in forensic body-fluid identification J. Forensic Sci. 56 2011 1464 1470
25. Z. Wang, H.B. Luo, X.F. Pan, M. Liao, and Y.P. Hou A model for data analysis of microRNA expression in forensic body fluid identification Forensic Sci. Int. Genet. 6 2012 419 423
26. Y. Li, Z. Wang, and Y.P. Hou MiR16 as a microRNA marker applied in species identification Forensic Sci. Int. Genet. Suppl. Ser. 1 2011 e313 e314
27. J.L. Guthrie, C. Seah, S. Brown, P. Tang, F. Jamieson, and S.J. Drews Use of Bordetella pertussis BP3385 to establish a cutoff value for an IS481-targeted real-time PCR assay J. Clin. Microbiol. 46 2008 3798 3799
28. M.W. Pfaffl, A. Tichopad, C. Prgomet, and T.P. Neuvians Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper - Excel-based tool using pair-wise correlations Biotechnol. Lett. 26 2004 509 515
29. M.W. Pfaffl A new mathematical model for relative quantification in real-time RT-PCR Nucleic Acids Res. 29 2001 e45
30. R. Soong, J. Ruschoff, and K. Tabiti Detection of Colorectal Micrometastasis by Quantitative RT-PCR of Cytokeratin 20 mRNA 2000 Roche Diagnostics Internal Publication
31. P. Landgraf, M. Rusu, R. Sheridan, A. Sewer, N. Iovino, and A. Aravin A mammalian microRNA expression atlas based on small RNA library sequencing Cell 129 2007 1401 1414
32. J.Q. Yin, R.C. Zhao, and K.V. Morris Profiling microRNA expression with microarrays Trends Biotechnol. 26 2008 70 76
33. R. Saba, and S.A. Booth Target labelling for the detection and profiling of microRNAs expressed in CNS tissue using microarrays BMC Biotechnol. 6 2006 47
34. F. Sato, S. Tsuchiya, K. Terasawa, and G. Tsujimoto Intra-platform repeatability and inter-platform comparability of microRNA microarray technology PLoS One 5 2009 e5540
35. Y. Chen, J.A. Gelfond, L.M. McManus, and P.K. Shireman Reproducibility of quantitative RT-PCR array in miRNA expression profiling and comparison with microarray analysis BMC Genomics 10 2009 407
36. J. Vandesompele, K.D. Preter, F. Pattyn, B. Poppe, N.V. Roy, and A.D. Paepe Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes Genome Biol. 3 2002 34
37. T. Hruz, M. Wyss, M. Docquier, M.W. Pfaffl, S. Masanetz, and L. Borghi RefGenes: identification of reliable and condition specific reference genes for RT-qPCR data normalization BMC Genomics 12 2011 156
38. K.J. Livak, and T.D. Schmittgen Analysis of relative gene expression data using real-time quantitative PCR and the 2(-Delta Delta C(T)) method Methods 25 2001 402 408
39. Y. Karlen, A. McNair, S. Perseguers, C. Mazza, and N. Mermod Statistical significance of quantitative PCR BMC Bioinformatics 20 2007 131
40. J. Huggett, K. Dheda, S. Bustin, and A. Zumla Real-time RT-PCR normalisation; strategies and considerations Genes Immunity 4 2005 279 284