-
1
-
-
0018857680
-
Selfish DNA: the ultimate parasite
-
Orgel L.E., Crick F.H. Selfish DNA: the ultimate parasite. Nature 1980, 284:604-607.
-
(1980)
Nature
, vol.284
, pp. 604-607
-
-
Orgel, L.E.1
Crick, F.H.2
-
2
-
-
0021715393
-
The significance of responses of the genome to challenge
-
McClintock B. The significance of responses of the genome to challenge. Science 1984, 226:792-801.
-
(1984)
Science
, vol.226
, pp. 792-801
-
-
McClintock, B.1
-
3
-
-
0033061598
-
The suppressor-mutator element and the evolutionary riddle of transposons
-
Fedoroff N.V. The suppressor-mutator element and the evolutionary riddle of transposons. Genes Cells 1999, 4:11-19.
-
(1999)
Genes Cells
, vol.4
, pp. 11-19
-
-
Fedoroff, N.V.1
-
4
-
-
42149187766
-
Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets
-
Buisine N., Quesneville H., Colot V. Improved detection and annotation of transposable elements in sequenced genomes using multiple reference sequence sets. Genomics 2008, 91:467-475.
-
(2008)
Genomics
, vol.91
, pp. 467-475
-
-
Buisine, N.1
Quesneville, H.2
Colot, V.3
-
5
-
-
70450202132
-
The B73 maize genome: complexity, diversity, and dynamics
-
Schnable P.S., Ware D., Fulton R.S., Stein J.C., Wei F., Pasternak S., Liang C., Zhang J., Fulton L., Graves T.A., et al. The B73 maize genome: complexity, diversity, and dynamics. Science 2009, 326:1112-1115.
-
(2009)
Science
, vol.326
, pp. 1112-1115
-
-
Schnable, P.S.1
Ware, D.2
Fulton, R.S.3
Stein, J.C.4
Wei, F.5
Pasternak, S.6
Liang, C.7
Zhang, J.8
Fulton, L.9
Graves, T.A.10
-
6
-
-
0027303886
-
Arabidopsis thaliana DNA methylation mutants
-
Vongs A., Kakutani T., Martienssen R.A., Richards E.J. Arabidopsis thaliana DNA methylation mutants. Science 1993, 260:3.
-
(1993)
Science
, vol.260
, pp. 3
-
-
Vongs, A.1
Kakutani, T.2
Martienssen, R.A.3
Richards, E.J.4
-
7
-
-
3342927934
-
Role of transposable elements in heterochromatin and epigenetic control
-
Lippman Z.B., Gendrel A.-V., Black M., Vaughn M.W., Dedhia N., McCombie W.R., Lavine K., Mittal V., May B.P., Kasschau K.D., et al. Role of transposable elements in heterochromatin and epigenetic control. Nature 2004, 430:471-476.
-
(2004)
Nature
, vol.430
, pp. 471-476
-
-
Lippman, Z.B.1
Gendrel, A.-V.2
Black, M.3
Vaughn, M.W.4
Dedhia, N.5
McCombie, W.R.6
Lavine, K.7
Mittal, V.8
May, B.P.9
Kasschau, K.D.10
-
8
-
-
0034103860
-
Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation
-
Hirochika H., Okamoto H., Kakutani T. Silencing of retrotransposons in Arabidopsis and reactivation by the ddm1 mutation. Plant Cell 2000, 12:357-369.
-
(2000)
Plant Cell
, vol.12
, pp. 357-369
-
-
Hirochika, H.1
Okamoto, H.2
Kakutani, T.3
-
9
-
-
33947303168
-
Transposable elements and the epigenetic regulation of the genome
-
Slotkin R.K., Martienssen R.A. Transposable elements and the epigenetic regulation of the genome. Nat Rev Genet 2007, 8:272-285.
-
(2007)
Nat Rev Genet
, vol.8
, pp. 272-285
-
-
Slotkin, R.K.1
Martienssen, R.A.2
-
10
-
-
74949088965
-
MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing
-
Yokthongwattana C., Bucher E., Caikovski M., Vaillant I., Nicolet J., Mittelsten Scheid O., Paszkowski J. MOM1 and Pol-IV/V interactions regulate the intensity and specificity of transcriptional gene silencing. EMBO J 2010, 29:340-351.
-
(2010)
EMBO J
, vol.29
, pp. 340-351
-
-
Yokthongwattana, C.1
Bucher, E.2
Caikovski, M.3
Vaillant, I.4
Nicolet, J.5
Mittelsten Scheid, O.6
Paszkowski, J.7
-
11
-
-
33751533880
-
MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis
-
Vaillant I., Schubert I., Tourmente S., Mathieu O. MOM1 mediates DNA-methylation-independent silencing of repetitive sequences in Arabidopsis. EMBO Rep 2006, 7:1273-1278.
-
(2006)
EMBO Rep
, vol.7
, pp. 1273-1278
-
-
Vaillant, I.1
Schubert, I.2
Tourmente, S.3
Mathieu, O.4
-
12
-
-
79961209289
-
A " mille-feuille" of silencing: epigenetic control of transposable elements
-
Rigal M., Mathieu O. A " mille-feuille" of silencing: epigenetic control of transposable elements. Biochim Biophys Acta 2011, 1809:452-458.
-
(2011)
Biochim Biophys Acta
, vol.1809
, pp. 452-458
-
-
Rigal, M.1
Mathieu, O.2
-
13
-
-
0037143444
-
Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation
-
Johnson L., Cao X., Jacobsen S.E. Interplay between two epigenetic marks. DNA methylation and histone H3 lysine 9 methylation. Curr Biol 2002, 12:1360-1367.
-
(2002)
Curr Biol
, vol.12
, pp. 1360-1367
-
-
Johnson, L.1
Cao, X.2
Jacobsen, S.E.3
-
14
-
-
33745561418
-
Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis
-
Huettel B., Kanno T., Daxinger L., Aufsatz W., Matzke A.J.M., Matzke M. Endogenous targets of RNA-directed DNA methylation and Pol IV in Arabidopsis. EMBO J 2006, 25:2828-2836.
-
(2006)
EMBO J
, vol.25
, pp. 2828-2836
-
-
Huettel, B.1
Kanno, T.2
Daxinger, L.3
Aufsatz, W.4
Matzke, A.J.M.5
Matzke, M.6
-
15
-
-
19344374219
-
Genetic and functional diversification of small RNA pathways in plants
-
Xie Z., Johansen L.K., Gustafson A.M., Kasschau K.D., Lellis A.D., Zilberman D., Jacobsen S.E., Carrington J.C. Genetic and functional diversification of small RNA pathways in plants. PLoS Biol 2004, 2:E104.
-
(2004)
PLoS Biol
, vol.2
-
-
Xie, Z.1
Johansen, L.K.2
Gustafson, A.M.3
Kasschau, K.D.4
Lellis, A.D.5
Zilberman, D.6
Jacobsen, S.E.7
Carrington, J.C.8
-
16
-
-
79956066320
-
Integrative epigenomic mapping defines four main chromatin states in Arabidopsis
-
Roudier F., Ahmed I., Bérard C., Sarazin A., Mary-Huard T., Cortijo S., Bouyer D., Caillieux E., Duvernois-Berthet E., Al-Shikhley L., et al. Integrative epigenomic mapping defines four main chromatin states in Arabidopsis. EMBO J 2011, 30:1928-1938.
-
(2011)
EMBO J
, vol.30
, pp. 1928-1938
-
-
Roudier, F.1
Ahmed, I.2
Bérard, C.3
Sarazin, A.4
Mary-Huard, T.5
Cortijo, S.6
Bouyer, D.7
Caillieux, E.8
Duvernois-Berthet, E.9
Al-Shikhley, L.10
-
17
-
-
84862270547
-
MORC family ATPases required for heterochromatin condensation and gene silencing
-
Moissiard G., Cokus S.J., Cary J., Feng S., Billi A.C., Stroud H., Husmann D., Zhan Y., Lajoie B.R., McCord R.P., et al. MORC family ATPases required for heterochromatin condensation and gene silencing. Science 2012, 336:1448-1451.
-
(2012)
Science
, vol.336
, pp. 1448-1451
-
-
Moissiard, G.1
Cokus, S.J.2
Cary, J.3
Feng, S.4
Billi, A.C.5
Stroud, H.6
Husmann, D.7
Zhan, Y.8
Lajoie, B.R.9
McCord, R.P.10
-
18
-
-
0034636551
-
Disruption of the plant gene MOM releases transcriptional silencing of methylated genes
-
Amedeo P., Habu Y., Afsar K., Mittelsten Scheid O., Paszkowski J. Disruption of the plant gene MOM releases transcriptional silencing of methylated genes. Nature 2000, 405:203-206.
-
(2000)
Nature
, vol.405
, pp. 203-206
-
-
Amedeo, P.1
Habu, Y.2
Afsar, K.3
Mittelsten Scheid, O.4
Paszkowski, J.5
-
19
-
-
0032080772
-
Activation of plant retrotransposons under stress conditions
-
Grandbastien M.A. Activation of plant retrotransposons under stress conditions. Trends Plant Sci 1998, 3:181-187.
-
(1998)
Trends Plant Sci
, vol.3
, pp. 181-187
-
-
Grandbastien, M.A.1
-
20
-
-
78449259560
-
Stress-induced activation of heterochromatic transcription
-
Tittel-Elmer M., Bucher E., Broger L., Mathieu O., Paszkowski J., Vaillant I. Stress-induced activation of heterochromatic transcription. PLoS Genet 2010, 6:e1001175.
-
(2010)
PLoS Genet
, vol.6
-
-
Tittel-Elmer, M.1
Bucher, E.2
Broger, L.3
Mathieu, O.4
Paszkowski, J.5
Vaillant, I.6
-
21
-
-
78049460068
-
Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis
-
Pecinka A., Dinh H.Q., Baubec T., Rosa M., Lettner N., Mittelsten Scheid O. Epigenetic regulation of repetitive elements is attenuated by prolonged heat stress in Arabidopsis. Plant Cell 2010, 22:3118-3129.
-
(2010)
Plant Cell
, vol.22
, pp. 3118-3129
-
-
Pecinka, A.1
Dinh, H.Q.2
Baubec, T.3
Rosa, M.4
Lettner, N.5
Mittelsten Scheid, O.6
-
22
-
-
77953013935
-
Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis
-
Lang-Mladek C., Popova O., Kiok K., Berlinger M., Rakic B., Aufsatz W., Jonak C., Hauser M.-T., Luschnig C. Transgenerational inheritance and resetting of stress-induced loss of epigenetic gene silencing in Arabidopsis. Mol Plant 2010, 3:594-602.
-
(2010)
Mol Plant
, vol.3
, pp. 594-602
-
-
Lang-Mladek, C.1
Popova, O.2
Kiok, K.3
Berlinger, M.4
Rakic, B.5
Aufsatz, W.6
Jonak, C.7
Hauser, M.-T.8
Luschnig, C.9
-
23
-
-
79957679448
-
Epigenetic contribution to stress adaptation in plants
-
Mirouze M., Paszkowski J. Epigenetic contribution to stress adaptation in plants. Curr Opin Plant Biol 2011, 14:267-274.
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 267-274
-
-
Mirouze, M.1
Paszkowski, J.2
-
24
-
-
84864679478
-
Widespread dynamic DNA methylation in response to biotic stress
-
Dowen R.H., Pelizzola M., Schmitz R.J., Lister R., Dowen J.M., Nery J.R., Dixon J.E., Ecker J.R. Widespread dynamic DNA methylation in response to biotic stress. Proc Natl Acad Sci USA 2012, 109:E2183-E2191.
-
(2012)
Proc Natl Acad Sci USA
, vol.109
-
-
Dowen, R.H.1
Pelizzola, M.2
Schmitz, R.J.3
Lister, R.4
Dowen, J.M.5
Nery, J.R.6
Dixon, J.E.7
Ecker, J.R.8
-
25
-
-
79953746026
-
An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress
-
Ito H., Gaubert H., Bucher E., Mirouze M., Vaillant I., Paszkowski J. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 2011, 472:115-119.
-
(2011)
Nature
, vol.472
, pp. 115-119
-
-
Ito, H.1
Gaubert, H.2
Bucher, E.3
Mirouze, M.4
Vaillant, I.5
Paszkowski, J.6
-
26
-
-
84859199684
-
Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA
-
McCue A.D., Nuthikattu S., Reeder S.H., Slotkin R.K. Gene expression and stress response mediated by the epigenetic regulation of a transposable element small RNA. PLoS Genet 2012, 8:e1002474.
-
(2012)
PLoS Genet
, vol.8
-
-
McCue, A.D.1
Nuthikattu, S.2
Reeder, S.H.3
Slotkin, R.K.4
-
27
-
-
70349278339
-
Selective epigenetic control of retrotransposition in Arabidopsis
-
Mirouze M., Reinders J., Bucher E., Nishimura T., Schneeberger K., Ossowski S., Cao J., Weigel D., Paszkowski J., Mathieu O. Selective epigenetic control of retrotransposition in Arabidopsis. Nature 2009, 461:427-430.
-
(2009)
Nature
, vol.461
, pp. 427-430
-
-
Mirouze, M.1
Reinders, J.2
Bucher, E.3
Nishimura, T.4
Schneeberger, K.5
Ossowski, S.6
Cao, J.7
Weigel, D.8
Paszkowski, J.9
Mathieu, O.10
-
28
-
-
59349118366
-
Epigenetic reprogramming and small RNA silencing of transposable elements in pollen
-
Slotkin R.K., Vaughn M.W., Borges F., Tanurd Ić M., Becker J.D., Feijó J.A., Martienssen R.A. Epigenetic reprogramming and small RNA silencing of transposable elements in pollen. Cell 2009, 136:461-472.
-
(2009)
Cell
, vol.136
, pp. 461-472
-
-
Slotkin, R.K.1
Vaughn, M.W.2
Borges, F.3
Tanurd Ić, M.4
Becker, J.D.5
Feijó, J.A.6
Martienssen, R.A.7
-
29
-
-
84891713248
-
Epigenomic consequences of immortalized plant cell suspension culture
-
Tanurdzic M., Vaughn M.W., Jiang H., Lee T.-J., Slotkin R.K., Sosinski B., Thompson W.F., Doerge R.W., Martienssen R.A. Epigenomic consequences of immortalized plant cell suspension culture. PLoS Biol 2008, 6:2880-2895.
-
(2008)
PLoS Biol
, vol.6
, pp. 2880-2895
-
-
Tanurdzic, M.1
Vaughn, M.W.2
Jiang, H.3
Lee, T.-J.4
Slotkin, R.K.5
Sosinski, B.6
Thompson, W.F.7
Doerge, R.W.8
Martienssen, R.A.9
-
30
-
-
78049354472
-
A small-RNA perspective on gametogenesis, fertilization, and early zygotic development
-
Bourc'his D., Voinnet O. A small-RNA perspective on gametogenesis, fertilization, and early zygotic development. Science 2010, 330:617-622.
-
(2010)
Science
, vol.330
, pp. 617-622
-
-
Bourc'his, D.1
Voinnet, O.2
-
31
-
-
78649630855
-
Virus-derived small interfering RNAs at the core of plant-virus interactions
-
Llave C. Virus-derived small interfering RNAs at the core of plant-virus interactions. Trends Plant Sci 2010, 15:701-707.
-
(2010)
Trends Plant Sci
, vol.15
, pp. 701-707
-
-
Llave, C.1
-
32
-
-
1242276761
-
Effects and side-effects of viral RNA silencing suppressors on short RNAs
-
Silhavy D., Burgyán J. Effects and side-effects of viral RNA silencing suppressors on short RNAs. Trends Plant Sci 2004, 9:76-83.
-
(2004)
Trends Plant Sci
, vol.9
, pp. 76-83
-
-
Silhavy, D.1
Burgyán, J.2
-
33
-
-
46249124331
-
SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex
-
Pouch-Pélissier M.-N., Pélissier T., Elmayan T., Vaucheret H., Boko D., Jantsch M.F., Deragon J.-M. SINE RNA induces severe developmental defects in Arabidopsis thaliana and interacts with HYL1 (DRB1), a key member of the DCL1 complex. PLoS Genet 2008, 4:e1000096.
-
(2008)
PLoS Genet
, vol.4
-
-
Pouch-Pélissier, M.-N.1
Pélissier, T.2
Elmayan, T.3
Vaucheret, H.4
Boko, D.5
Jantsch, M.F.6
Deragon, J.-M.7
-
34
-
-
79953163301
-
Genome reprogramming and small interfering RNA in the Arabidopsis germline
-
Calarco J.P., Martienssen R.A. Genome reprogramming and small interfering RNA in the Arabidopsis germline. Curr Opin Genet Dev 2011, 21:1-6.
-
(2011)
Curr Opin Genet Dev
, vol.21
, pp. 1-6
-
-
Calarco, J.P.1
Martienssen, R.A.2
-
35
-
-
84862777814
-
A role for small RNAs in DNA double-strand break repair
-
Wei W., Ba Z., Gao M., Wu Y., Ma Y., Amiard S., White C.I., Danielsen J.M.R., Yang Y.-G., Qi Y. A role for small RNAs in DNA double-strand break repair. Cell 2012, 149:101-112.
-
(2012)
Cell
, vol.149
, pp. 101-112
-
-
Wei, W.1
Ba, Z.2
Gao, M.3
Wu, Y.4
Ma, Y.5
Amiard, S.6
White, C.I.7
Danielsen, J.M.R.8
Yang, Y.-G.9
Qi, Y.10
-
36
-
-
0025860264
-
Transient occurrence of extrachromosomal DNA of an Arabidopsis thaliana transposon-like element, Tat1
-
Peleman J., Cottyn B., Van Camp W., Van Montagu M., Inzé D. Transient occurrence of extrachromosomal DNA of an Arabidopsis thaliana transposon-like element, Tat1. Proc Natl Acad Sci USA 1991, 88:3618-3622.
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 3618-3622
-
-
Peleman, J.1
Cottyn, B.2
Van Camp, W.3
Van Montagu, M.4
Inzé, D.5
-
37
-
-
0027157492
-
Identification of a mobile endogenous transposon in Arabidopsis thaliana
-
Tsay Y.F., Frank M.J., Page T., Dean C., Crawford N.M. Identification of a mobile endogenous transposon in Arabidopsis thaliana. Science 1993, 260:342-344.
-
(1993)
Science
, vol.260
, pp. 342-344
-
-
Tsay, Y.F.1
Frank, M.J.2
Page, T.3
Dean, C.4
Crawford, N.M.5
-
38
-
-
70349276670
-
Bursts of retrotransposition reproduced in Arabidopsis
-
Tsukahara S., Kobayashi A., Kawabe A., Mathieu O., Miura A., Kakutani T. Bursts of retrotransposition reproduced in Arabidopsis. Nature 2009, 461:423-426.
-
(2009)
Nature
, vol.461
, pp. 423-426
-
-
Tsukahara, S.1
Kobayashi, A.2
Kawabe, A.3
Mathieu, O.4
Miura, A.5
Kakutani, T.6
-
39
-
-
0035837378
-
Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis
-
Miura A., Yonebayashi S., Watanabe K., Toyama T., Shimada H., Kakutani T. Mobilization of transposons by a mutation abolishing full DNA methylation in Arabidopsis. Nature 2001, 411:212-214.
-
(2001)
Nature
, vol.411
, pp. 212-214
-
-
Miura, A.1
Yonebayashi, S.2
Watanabe, K.3
Toyama, T.4
Shimada, H.5
Kakutani, T.6
-
40
-
-
0035282119
-
Robertson's mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene decrease in DNA Methylation (DDM1)
-
Singer T., Yordan C., Martienssen R.A. Robertson's mutator transposons in A. thaliana are regulated by the chromatin-remodeling gene decrease in DNA Methylation (DDM1). Genes Dev 2001, 15:591-602.
-
(2001)
Genes Dev
, vol.15
, pp. 591-602
-
-
Singer, T.1
Yordan, C.2
Martienssen, R.A.3
-
41
-
-
65249186659
-
Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes
-
Reinders J., Wulff B.B.H., Mirouze M., Marí-Ordóñez A., Dapp M., Rozhon W., Bucher E., Theiler G., Paszkowski J. Compromised stability of DNA methylation and transposon immobilization in mosaic Arabidopsis epigenomes. Genes Dev 2009, 23:939-950.
-
(2009)
Genes Dev
, vol.23
, pp. 939-950
-
-
Reinders, J.1
Wulff, B.B.H.2
Mirouze, M.3
Marí-Ordóñez, A.4
Dapp, M.5
Rozhon, W.6
Bucher, E.7
Theiler, G.8
Paszkowski, J.9
-
42
-
-
67149086996
-
Extensive demethylation of repetitive elements during seed development underlies gene imprinting
-
Gehring M., Bubb K.L., Henikoff S. Extensive demethylation of repetitive elements during seed development underlies gene imprinting. Science 2009, 324:1447-1451.
-
(2009)
Science
, vol.324
, pp. 1447-1451
-
-
Gehring, M.1
Bubb, K.L.2
Henikoff, S.3
-
43
-
-
67149119197
-
Genome-wide demethylation of Arabidopsis endosperm
-
Hsieh T.-F., Ibarra C.A., Silva P., Zemach A., Eshed-Williams L., Fischer R.L., Zilberman D. Genome-wide demethylation of Arabidopsis endosperm. Science 2009, 324:1451-1454.
-
(2009)
Science
, vol.324
, pp. 1451-1454
-
-
Hsieh, T.-F.1
Ibarra, C.A.2
Silva, P.3
Zemach, A.4
Eshed-Williams, L.5
Fischer, R.L.6
Zilberman, D.7
-
44
-
-
77954735322
-
Maternal control of Pol IV-dependent siRNAs in Arabidopsis endosperm
-
Mosher R.A. Maternal control of Pol IV-dependent siRNAs in Arabidopsis endosperm. New Phytol 2010, 186:358-364.
-
(2010)
New Phytol
, vol.186
, pp. 358-364
-
-
Mosher, R.A.1
-
45
-
-
67650461957
-
Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis
-
Mosher R.A., Melnyk C.W., Kelly K.A., Dunn R.M., Studholme D.J., Baulcombe D.C. Uniparental expression of PolIV-dependent siRNAs in developing endosperm of Arabidopsis. Nature 2009, 460:283-286.
-
(2009)
Nature
, vol.460
, pp. 283-286
-
-
Mosher, R.A.1
Melnyk, C.W.2
Kelly, K.A.3
Dunn, R.M.4
Studholme, D.J.5
Baulcombe, D.C.6
-
46
-
-
77950086568
-
Control of female gamete formation by a small RNA pathway in Arabidopsis
-
Olmedo-Monfil V., Durán-Figueroa N., Arteaga-Vázquez M., Demesa-Arévalo E., Autran D., Grimanelli D., Slotkin R.K., Martienssen R.A., Vielle-Calzada J.-P. Control of female gamete formation by a small RNA pathway in Arabidopsis. Nature 2010, 464:628-632.
-
(2010)
Nature
, vol.464
, pp. 628-632
-
-
Olmedo-Monfil, V.1
Durán-Figueroa, N.2
Arteaga-Vázquez, M.3
Demesa-Arévalo, E.4
Autran, D.5
Grimanelli, D.6
Slotkin, R.K.7
Martienssen, R.A.8
Vielle-Calzada, J.-P.9
-
47
-
-
50249117653
-
Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis
-
Jullien P.E., Mosquna A., Ingouff M., Sakata T., Ohad N., Berger F. Retinoblastoma and its binding partner MSI1 control imprinting in Arabidopsis. PLoS Biol 2008, 6:e194.
-
(2008)
PLoS Biol
, vol.6
-
-
Jullien, P.E.1
Mosquna, A.2
Ingouff, M.3
Sakata, T.4
Ohad, N.5
Berger, F.6
-
48
-
-
27944499244
-
Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae
-
Peterson-Burch B.D., Nettleton D., Voytas D.F. Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae. Genome Biol 2004, 5:R78.
-
(2004)
Genome Biol
, vol.5
-
-
Peterson-Burch, B.D.1
Nettleton, D.2
Voytas, D.F.3
-
49
-
-
79955082486
-
Transposable element origins of epigenetic gene regulation
-
Lisch D., Bennetzen J.L. Transposable element origins of epigenetic gene regulation. Curr Opin Plant Biol 2011, 14:156-161.
-
(2011)
Curr Opin Plant Biol
, vol.14
, pp. 156-161
-
-
Lisch, D.1
Bennetzen, J.L.2
-
50
-
-
0033637356
-
The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene
-
Soppe W.J., Jacobsen S.E., Alonso-Blanco C., Jackson J.P., Kakutani T., Koornneef M., Peeters A. The late flowering phenotype of fwa mutants is caused by gain-of-function epigenetic alleles of a homeodomain gene. Mol Cell 2000, 6:791-802.
-
(2000)
Mol Cell
, vol.6
, pp. 791-802
-
-
Soppe, W.J.1
Jacobsen, S.E.2
Alonso-Blanco, C.3
Jackson, J.P.4
Kakutani, T.5
Koornneef, M.6
Peeters, A.7
-
51
-
-
33845621109
-
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats
-
Kinoshita Y., Saze H., Kinoshita T., Miura A., Soppe W.J.J., Koornneef M., Kakutani T. Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats. Plant J 2007, 49:38-45.
-
(2007)
Plant J
, vol.49
, pp. 38-45
-
-
Kinoshita, Y.1
Saze, H.2
Kinoshita, T.3
Miura, A.4
Soppe, W.J.J.5
Koornneef, M.6
Kakutani, T.7
-
52
-
-
38549116060
-
Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana
-
Saze H., Shiraishi A., Miura A., Kakutani T. Control of genic DNA methylation by a jmjC domain-containing protein in Arabidopsis thaliana. Science 2008, 319:462-465.
-
(2008)
Science
, vol.319
, pp. 462-465
-
-
Saze, H.1
Shiraishi, A.2
Miura, A.3
Kakutani, T.4
-
53
-
-
34547747862
-
Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1
-
Saze H., Kakutani T. Heritable epigenetic mutation of a transposon-flanked Arabidopsis gene due to lack of the chromatin-remodeling factor DDM1. EMBO J 2007, 26:3641-3652.
-
(2007)
EMBO J
, vol.26
, pp. 3641-3652
-
-
Saze, H.1
Kakutani, T.2
-
54
-
-
68149144366
-
Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression
-
Hollister J.D., Gaut B.S. Epigenetic silencing of transposable elements: a trade-off between reduced transposition and deleterious effects on neighboring gene expression. Genome Res 2009, 19:1419-1428.
-
(2009)
Genome Res
, vol.19
, pp. 1419-1428
-
-
Hollister, J.D.1
Gaut, B.S.2
-
55
-
-
0033539183
-
An epigenetic mutation responsible for natural variation in floral symmetry
-
Cubas P., Vincent C., Coen E. An epigenetic mutation responsible for natural variation in floral symmetry. Nature 1999, 401:157-161.
-
(1999)
Nature
, vol.401
, pp. 157-161
-
-
Cubas, P.1
Vincent, C.2
Coen, E.3
-
56
-
-
33746513103
-
A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening
-
Manning K., Tör M., Poole M., Hong Y., Thompson A.J., King G.J., Giovannoni J.J., Seymour G.B. A naturally occurring epigenetic mutation in a gene encoding an SBP-box transcription factor inhibits tomato fruit ripening. Nature Genet 2006, 38:948-952.
-
(2006)
Nature Genet
, vol.38
, pp. 948-952
-
-
Manning, K.1
Tör, M.2
Poole, M.3
Hong, Y.4
Thompson, A.J.5
King, G.J.6
Giovannoni, J.J.7
Seymour, G.B.8
-
57
-
-
18944382213
-
Happy together: the life and times of Ty retrotransposons and their hosts
-
Lesage P., Todeschini A.L. Happy together: the life and times of Ty retrotransposons and their hosts. Cytogenet Genome Res 2005, 110:70-90.
-
(2005)
Cytogenet Genome Res
, vol.110
, pp. 70-90
-
-
Lesage, P.1
Todeschini, A.L.2
-
58
-
-
84859367607
-
Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata
-
Tsukahara S., Kawabe A., Kobayashi A., Ito T., Aizu T., Shin I.T., Toyoda A., Fujiyama A., Tarutani Y., Kakutani T. Centromere-targeted de novo integrations of an LTR retrotransposon of Arabidopsis lyrata. Genes Dev 2012, 26:705-713.
-
(2012)
Genes Dev
, vol.26
, pp. 705-713
-
-
Tsukahara, S.1
Kawabe, A.2
Kobayashi, A.3
Ito, T.4
Aizu, T.5
Shin, I.T.6
Toyoda, A.7
Fujiyama, A.8
Tarutani, Y.9
Kakutani, T.10
-
59
-
-
78650637906
-
Epigenetic reprogramming during vegetative phase change in maize
-
Li H., Freeling M., Lisch D. Epigenetic reprogramming during vegetative phase change in maize. Proc Natl Acad Sci USA 2010, 107:22184-22189.
-
(2010)
Proc Natl Acad Sci USA
, vol.107
, pp. 22184-22189
-
-
Li, H.1
Freeling, M.2
Lisch, D.3
-
60
-
-
77952584373
-
An endogenous, systemic RNAi pathway in plants
-
Dunoyer P., Brosnan C.A., Schott G., Wang Y., Jay F., Alioua A., Himber C., Voinnet O. An endogenous, systemic RNAi pathway in plants. EMBO J 2010, 29:1699-1712.
-
(2010)
EMBO J
, vol.29
, pp. 1699-1712
-
-
Dunoyer, P.1
Brosnan, C.A.2
Schott, G.3
Wang, Y.4
Jay, F.5
Alioua, A.6
Himber, C.7
Voinnet, O.8
-
61
-
-
77952403409
-
Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells
-
Molnar A., Melnyk C.W., Bassett A., Hardcastle T.J., Dunn R., Baulcombe D.C. Small silencing RNAs in plants are mobile and direct epigenetic modification in recipient cells. Science 2010, 328:872-875.
-
(2010)
Science
, vol.328
, pp. 872-875
-
-
Molnar, A.1
Melnyk, C.W.2
Bassett, A.3
Hardcastle, T.J.4
Dunn, R.5
Baulcombe, D.C.6
-
62
-
-
79960729221
-
Silencing signals in plants: a long journey for small RNAs
-
Molnar A., Melnyk C., Baulcombe D.C. Silencing signals in plants: a long journey for small RNAs. Genome Biol 2011, 12:215.
-
(2011)
Genome Biol
, vol.12
, pp. 215
-
-
Molnar, A.1
Melnyk, C.2
Baulcombe, D.C.3
-
63
-
-
78651081445
-
The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana
-
Deal R.B., Henikoff S. The INTACT method for cell type-specific gene expression and chromatin profiling in Arabidopsis thaliana. Nat Protoc 2011, 6:56-68.
-
(2011)
Nat Protoc
, vol.6
, pp. 56-68
-
-
Deal, R.B.1
Henikoff, S.2
-
64
-
-
77954719711
-
The evolutionary ecology of clonally propagated domesticated plants
-
Mckey D., Elias M., Pujol B., Duputié A. The evolutionary ecology of clonally propagated domesticated plants. New Phytol 2010, 186:318-332.
-
(2010)
New Phytol
, vol.186
, pp. 318-332
-
-
Mckey, D.1
Elias, M.2
Pujol, B.3
Duputié, A.4
-
65
-
-
84855820359
-
Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression
-
Vining K.J., Pomraning K.R., Wilhelm L.J., Priest H.D., Pellegrini M., Mockler T.C., Freitag M., Strauss S.H. Dynamic DNA cytosine methylation in the Populus trichocarpa genome: tissue-level variation and relationship to gene expression. BMC Genomics 2012, 13:27.
-
(2012)
BMC Genomics
, vol.13
, pp. 27
-
-
Vining, K.J.1
Pomraning, K.R.2
Wilhelm, L.J.3
Priest, H.D.4
Pellegrini, M.5
Mockler, T.C.6
Freitag, M.7
Strauss, S.H.8
-
66
-
-
66449124318
-
Epigenetic regulation of transposable elements in plants
-
Lisch D. Epigenetic regulation of transposable elements in plants. Annu Rev Plant Biol 2009, 60:43-66.
-
(2009)
Annu Rev Plant Biol
, vol.60
, pp. 43-66
-
-
Lisch, D.1
-
67
-
-
77249170184
-
Establishing, maintaining and modifying DNA methylation patterns in plants and animals
-
Law J.A., Jacobsen S.E. Establishing, maintaining and modifying DNA methylation patterns in plants and animals. Nat Rev Genet 2010, 11:204-220.
-
(2010)
Nat Rev Genet
, vol.11
, pp. 204-220
-
-
Law, J.A.1
Jacobsen, S.E.2
-
68
-
-
80054837794
-
Transgenerational epigenetic instability is a source of novel methylation variants
-
Schmitz R.J., Schultz M.D., Lewsey M.G., O'Malley R.C., Urich M.A., Libiger O., Schork N.J., Ecker J.R. Transgenerational epigenetic instability is a source of novel methylation variants. Science 2011, 334:369-373.
-
(2011)
Science
, vol.334
, pp. 369-373
-
-
Schmitz, R.J.1
Schultz, M.D.2
Lewsey, M.G.3
O'Malley, R.C.4
Urich, M.A.5
Libiger, O.6
Schork, N.J.7
Ecker, J.R.8
-
69
-
-
80054718602
-
Spontaneous epigenetic variation in the Arabidopsis thaliana methylome
-
Becker C., Hagmann J., Müller J., Koenig D., Stegle O., Borgwardt K., Weigel D. Spontaneous epigenetic variation in the Arabidopsis thaliana methylome. Nature 2011, 480:245-249.
-
(2011)
Nature
, vol.480
, pp. 245-249
-
-
Becker, C.1
Hagmann, J.2
Müller, J.3
Koenig, D.4
Stegle, O.5
Borgwardt, K.6
Weigel, D.7
-
70
-
-
79960716754
-
Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing
-
Haag J.R., Pikaard C.S. Multisubunit RNA polymerases IV and V: purveyors of non-coding RNA for plant gene silencing. Nat Rev Mol Cell Biol 2011, 12:483-492.
-
(2011)
Nat Rev Mol Cell Biol
, vol.12
, pp. 483-492
-
-
Haag, J.R.1
Pikaard, C.S.2
-
71
-
-
77952090735
-
An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation
-
Gao Z., Liu H.-L., Daxinger L., Pontes O., He X., Qian W., Lin H., Xie M., Lorkovic Z.J., Zhang S., et al. An RNA polymerase II- and AGO4-associated protein acts in RNA-directed DNA methylation. Nature 2010, 465:106-109.
-
(2010)
Nature
, vol.465
, pp. 106-109
-
-
Gao, Z.1
Liu, H.-L.2
Daxinger, L.3
Pontes, O.4
He, X.5
Qian, W.6
Lin, H.7
Xie, M.8
Lorkovic, Z.J.9
Zhang, S.10
-
72
-
-
24344433177
-
Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis
-
Pontier D., Yahubyan G., Vega D., Bulski A., Saez-Vasquez J., Hakimi M.-A., Lerbs-Mache S., Colot V., Lagrange T. Reinforcement of silencing at transposons and highly repeated sequences requires the concerted action of two distinct RNA polymerases IV in Arabidopsis. Genes Dev 2005, 19:2030-2040.
-
(2005)
Genes Dev
, vol.19
, pp. 2030-2040
-
-
Pontier, D.1
Yahubyan, G.2
Vega, D.3
Bulski, A.4
Saez-Vasquez, J.5
Hakimi, M.-A.6
Lerbs-Mache, S.7
Colot, V.8
Lagrange, T.9
-
73
-
-
55449131096
-
Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes
-
Wierzbicki A.T., Haag J.R., Pikaard C.S. Noncoding transcription by RNA polymerase Pol IVb/Pol V mediates transcriptional silencing of overlapping and adjacent genes. Cell 2008, 135:635-648.
-
(2008)
Cell
, vol.135
, pp. 635-648
-
-
Wierzbicki, A.T.1
Haag, J.R.2
Pikaard, C.S.3
-
74
-
-
62549160981
-
A role for RNAi in the selective correction of DNA methylation defects
-
Teixeira F.K., Heredia F., Sarazin A., Roudier F., Boccara M., Ciaudo C., Cruaud C., Poulain J., Berdasco M., Fraga M.F., et al. A role for RNAi in the selective correction of DNA methylation defects. Science 2009, 323:1600-1604.
-
(2009)
Science
, vol.323
, pp. 1600-1604
-
-
Teixeira, F.K.1
Heredia, F.2
Sarazin, A.3
Roudier, F.4
Boccara, M.5
Ciaudo, C.6
Cruaud, C.7
Poulain, J.8
Berdasco, M.9
Fraga, M.F.10
-
75
-
-
84861075495
-
DNA methylation in plants: relationship with small RNAs and histone modifications, and functions in transposon inactivation
-
Saze H., Tsugane K., Kanno T., Nishimura T. DNA methylation in plants: relationship with small RNAs and histone modifications, and functions in transposon inactivation. Plant Cell Physiol 2012, 53:766-784.
-
(2012)
Plant Cell Physiol
, vol.53
, pp. 766-784
-
-
Saze, H.1
Tsugane, K.2
Kanno, T.3
Nishimura, T.4
-
76
-
-
40749109894
-
Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning
-
Cokus S.J., Feng S., Zhang X., Chen Z., Merriman B., Haudenschild C.D., Pradhan S., Nelson S.F., Pellegrini M., Jacobsen S.E. Shotgun bisulphite sequencing of the Arabidopsis genome reveals DNA methylation patterning. Nature 2008, 452:215-219.
-
(2008)
Nature
, vol.452
, pp. 215-219
-
-
Cokus, S.J.1
Feng, S.2
Zhang, X.3
Chen, Z.4
Merriman, B.5
Haudenschild, C.D.6
Pradhan, S.7
Nelson, S.F.8
Pellegrini, M.9
Jacobsen, S.E.10
-
77
-
-
42749087226
-
Highly integrated single-base resolution maps of the epigenome in Arabidopsis
-
Lister R., O'Malley R.C., Tonti-Filippini J., Gregory B.D., Berry C.C., Millar A.H., Ecker J.R. Highly integrated single-base resolution maps of the epigenome in Arabidopsis. Cell 2008, 133:523-536.
-
(2008)
Cell
, vol.133
, pp. 523-536
-
-
Lister, R.1
O'Malley, R.C.2
Tonti-Filippini, J.3
Gregory, B.D.4
Berry, C.C.5
Millar, A.H.6
Ecker, J.R.7
-
78
-
-
51549119808
-
Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing
-
Perez-Hormaeche J., Potet F., Beauclair L., Le Masson I., Courtial B., Bouche N., Lucas H. Invasion of the Arabidopsis genome by the tobacco retrotransposon Tnt1 is controlled by reversible transcriptional gene silencing. Plant Physiol 2008, 147:1264-1278.
-
(2008)
Plant Physiol
, vol.147
, pp. 1264-1278
-
-
Perez-Hormaeche, J.1
Potet, F.2
Beauclair, L.3
Le Masson, I.4
Courtial, B.5
Bouche, N.6
Lucas, H.7
-
79
-
-
0035167728
-
Linear DNA intermediates of the Tto1 retrotransposon in Gag particles accumulated in stressed tobacco and Arabidopsis thaliana
-
Takeda S., Sugimoto K., Kakutani T., Hirochika H. Linear DNA intermediates of the Tto1 retrotransposon in Gag particles accumulated in stressed tobacco and Arabidopsis thaliana. Plant J 2001, 28:307-317.
-
(2001)
Plant J
, vol.28
, pp. 307-317
-
-
Takeda, S.1
Sugimoto, K.2
Kakutani, T.3
Hirochika, H.4
-
80
-
-
40849147073
-
Virus-like particle formation and translational start site choice of the plant retrotransposon Tto1
-
Böhmdorfer G., Luxa K., Frosch A., Garber K., Tramontano A., Jelenic S., Weber M., Bachmair A. Virus-like particle formation and translational start site choice of the plant retrotransposon Tto1. Virology 2008, 373:437-446.
-
(2008)
Virology
, vol.373
, pp. 437-446
-
-
Böhmdorfer, G.1
Luxa, K.2
Frosch, A.3
Garber, K.4
Tramontano, A.5
Jelenic, S.6
Weber, M.7
Bachmair, A.8
-
81
-
-
67651227407
-
Assessing the impact of transgenerational epigenetic variation on complex traits
-
Johannes F., Porcher E., Teixeira F.K., Saliba-Colombani V., Simon M., Agier N., Bulski A., Albuisson J., Heredia F., Audigier P., et al. Assessing the impact of transgenerational epigenetic variation on complex traits. PLoS Genet 2009, 5:e1000530.
-
(2009)
PLoS Genet
, vol.5
-
-
Johannes, F.1
Porcher, E.2
Teixeira, F.K.3
Saliba-Colombani, V.4
Simon, M.5
Agier, N.6
Bulski, A.7
Albuisson, J.8
Heredia, F.9
Audigier, P.10
-
82
-
-
0037418586
-
Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis
-
Kato M., Miura A., Bender J., Jacobsen S.E., Kakutani T. Role of CG and non-CG methylation in immobilization of transposons in Arabidopsis. Curr Biol 2003, 13:421-426.
-
(2003)
Curr Biol
, vol.13
, pp. 421-426
-
-
Kato, M.1
Miura, A.2
Bender, J.3
Jacobsen, S.E.4
Kakutani, T.5
|