-
1
-
-
0030038464
-
Methods used in the structure determination of bovine mitochondrial F1 ATPase
-
Abrahams, J.P. and Leslie, A.G. (1996). Methods used in the structure determination of bovine mitochondrial F1 ATPase. Acta Crystallogr. D 52, 30-42.
-
(1996)
Acta Crystallogr. D
, vol.52
, pp. 30-42
-
-
Abrahams, J.P.1
Leslie, A.G.2
-
2
-
-
34548367543
-
Functional interactions between Prp8, Prp18, Slu7, and U5 snRNA during the second step of pre-mRNA splicing
-
Aronova, A., Bacikova, D., Crotti, L.B., Horowitz, D.S., and Schwer, B. (2007). Functional interactions between Prp8, Prp18, Slu7, and U5 snRNA during the second step of pre-mRNA splicing. RNA 13, 1437-1444.
-
(2007)
Rna
, vol.13
, pp. 1437-1444
-
-
Aronova, A.1
Bacikova, D.2
Crotti, L.B.3
Horowitz, D.S.4
Schwer, B.5
-
3
-
-
34547211817
-
The long unwinding road of RNA helicases
-
Bleichert, F. and Baserga, S.J. (2007). The long unwinding road of RNA helicases. Mol. Cell. 27, 339-352.
-
(2007)
Mol. Cell.
, vol.27
, pp. 339-352
-
-
Bleichert, F.1
Baserga, S.J.2
-
4
-
-
0242460576
-
Generation, representation and flow of phase information in structure determination: Recent developments in and around SHARP 2.0
-
Bricogne, G., Vonrhein, C., Flensburg, C., Schiltz, M., and Paciorek, W. (2003). Generation, representation and flow of phase information in structure determination: recent developments in and around SHARP 2.0. Acta Crystallogr. D 59, 2023-2030.
-
(2003)
Acta Crystallogr.
, vol.D
, Issue.59
, pp. 2023-2030
-
-
Bricogne, G.1
Vonrhein, C.2
Flensburg, C.3
Schiltz, M.4
Paciorek, W.5
-
5
-
-
34447132375
-
Structural basis for DNA duplex separation by a superfamily-2 helicase
-
Butner, K., Nehring, S., and Hopfner, K.P. (2007). Structural basis for DNA duplex separation by a superfamily-2 helicase. Nat. Struct. Mol. Biol. 14, 647-652.
-
(2007)
Nat. Struct. Mol. Biol.
, vol.14
, pp. 647-652
-
-
Butner, K.1
Nehring, S.2
Hopfner, K.P.3
-
6
-
-
0028103275
-
The CCP4 suite: Programs for protein crystallography
-
Collaborative Computational Project, Number 4
-
Collaborative Computational Project, Number 4. (1994). The CCP4 suite: programs for protein crystallography. Acta Crystallogr. D 50, 760-763.
-
(1994)
Acta Crystallogr. D
, vol.50
, pp. 760-763
-
-
-
7
-
-
0026088747
-
Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes
-
Company, M., Arenas, J., and Abelson, J. (1991). Requirement of the RNA helicase-like protein PRP22 for release of messenger RNA from spliceosomes. Nature 349, 487-493.
-
(1991)
Nature
, vol.349
, pp. 487-493
-
-
Company, M.1
Arenas, J.2
Abelson, J.3
-
8
-
-
84861984263
-
Structure, function and regulation of spliceosomal RNA helicases
-
Cordin, O., Hahn, D., and Beggs, J.D. (2012). Structure, function and regulation of spliceosomal RNA helicases. Curr. Opin. Cell Biol. 24, 1-8.
-
(2012)
Curr. Opin. Cell Biol.
, vol.24
, pp. 1-8
-
-
Cordin, O.1
Hahn, D.2
Beggs, J.D.3
-
9
-
-
34547559704
-
PDB2PQR: Expanding and upgrading automated preparation of biomolecular structures for molecular simulations
-
Dolinsky, T.J., Czodrowski, P., Li, H., Nielsen, J.E., Jensen, J.H., Klebe, G., and Baker, N.A. (2007). PDB2PQR: expanding and upgrading automated preparation of biomolecular structures for molecular simulations. Nucleic Acids Res. 35, W522-525.
-
(2007)
Nucleic Acids Res.
, vol.35
-
-
Dolinsky, T.J.1
Czodrowski, P.2
Li, H.3
Nielsen, J.E.4
Jensen, J.H.5
Klebe, G.6
Baker, N.A.7
-
10
-
-
13244281317
-
COOT: Model-building tools for molecular graphics
-
Emsley, P. and Cowtan, K. (2004). COOT: model-building tools for molecular graphics. Acta Crystallogr. D 60, 2126-2132.
-
(2004)
Acta Crystallogr. D
, vol.60
, pp. 2126-2132
-
-
Emsley, P.1
Cowtan, K.2
-
11
-
-
77649269768
-
Structural basis for the function of DEAH helicases
-
He, Y., Andersen, G.R., and Nielsen, K.H. (2010). Structural basis for the function of DEAH helicases. EMBO Rep. 11, 180-186.
-
(2010)
Embo Rep.
, vol.11
, pp. 180-186
-
-
He, Y.1
Andersen, G.R.2
Nielsen, K.H.3
-
12
-
-
70350089113
-
The mechanism of ATP-dependent RNA unwinding by DEAD box proteins
-
Hilbert, M., Karow, A.R., and Klostermeier, D. (2009). The mechanism of ATP-dependent RNA unwinding by DEAD box proteins. Biol. Chem. 390, 1237-1250.
-
(2009)
Biol. Chem.
, vol.390
, pp. 1237-1250
-
-
Hilbert, M.1
Karow, A.R.2
Klostermeier, D.3
-
13
-
-
79953675393
-
EIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism
-
Hilbert, M., Kebbel, F., Gubaev, A., and Klostermeier, D. (2011). eIF4G stimulates the activity of the DEAD box protein eIF4A by a conformational guidance mechanism. Nucleic Acids Res. 39, 2260-2270.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2260-2270
-
-
Hilbert, M.1
Kebbel, F.2
Gubaev, A.3
Klostermeier, D.4
-
14
-
-
34347385000
-
RNA helicases - One fold for many functions
-
Jankowsky, E. and Fairman, M.E. (2007). RNA helicases - one fold for many functions. Curr. Opin. Struct. Biol. 17, 316-324.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 316-324
-
-
Jankowsky, E.1
Fairman, M.E.2
-
15
-
-
69849091847
-
Crystallization and preliminary X-ray diffraction analysis of the C-terminal domain of the human spliceosomal DExD/H-box protein hPrp22
-
Kudlinzki, D., Nagel, C., and Ficner, R. (2009). Crystallization and preliminary X-ray diffraction analysis of the C-terminal domain of the human spliceosomal DExD/H-box protein hPrp22. Acta Crystallogr. Sect. F 65, 956-958.
-
(2009)
Acta Crystallogr. Sect. F
, vol.65
, pp. 956-958
-
-
Kudlinzki, D.1
Nagel, C.2
Ficner, R.3
-
16
-
-
0027169515
-
Main-chain bond lengths and bond angles in protein structures
-
Laskowski, R.A., Moss, D.S., and Thornton, J.M. (1993). Main-chain bond lengths and bond angles in protein structures. J. Mol. Biol. 231, 1049-1067.
-
(1993)
J. Mol. Biol.
, vol.231
, pp. 1049-1067
-
-
Laskowski, R.A.1
Moss, D.S.2
Thornton, J.M.3
-
17
-
-
72449189579
-
The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis
-
Lebaron, S., Papin, C., Capeyrou, R., Chen, Y.L., Froment, C., Monsarrat, B., Caizergues-Ferrer, M., Grigoriev, M., and Henry, Y. (2009). The ATPase and helicase activities of Prp43p are stimulated by the G-patch protein Pfa1p during yeast ribosome biogenesis. EMBO J. 28, 3808-3819.
-
(2009)
Embo J.
, vol.28
, pp. 3808-3819
-
-
Lebaron, S.1
Papin, C.2
Capeyrou, R.3
Chen, Y.L.4
Froment, C.5
Monsarrat, B.6
Caizergues-Ferrer, M.7
Grigoriev, M.8
Henry, Y.9
-
18
-
-
33749139723
-
Dead-box proteins: A family affair - Active and passive players in RNP-remodeling
-
Linder, P. (2006). Dead-box proteins: a family affair - active and passive players in RNP-remodeling. Nucleic Acids Res. 34, 4168-4180.
-
(2006)
Nucleic Acids Res.
, vol.34
, pp. 4168-4180
-
-
Linder, P.1
-
19
-
-
79960724199
-
From unwinding to clamping - The DEAD box RNA helicase family
-
Linder, P. and Jankowsky, E. (2011). From unwinding to clamping - the DEAD box RNA helicase family. Nat. Rev. Mol. Cell Biol. 12, 505-516.
-
(2011)
Nat. Rev. Mol. Cell Biol.
, vol.12
, pp. 505-516
-
-
Linder, P.1
Jankowsky, E.2
-
20
-
-
79954598438
-
A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export
-
Montpetit, B., Thomsen, N.D., Helmke, K.J., Seeliger, M.A., Berger, J.M., and Weis, K. (2011). A conserved mechanism of DEAD-box ATPase activation by nucleoporins and InsP6 in mRNA export. Nature 472, 238-242.
-
(2011)
Nature
, vol.472
, pp. 238-242
-
-
Montpetit, B.1
Thomsen, N.D.2
Helmke, K.J.3
Seeliger, M.A.4
Berger, J.M.5
Weis, K.6
-
21
-
-
84860129612
-
Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin
-
Mueller, U., Darowski, N., Fuchs, M.R., Forster, R., Hellmig, M., Paithankar, K.S., Puhringer, S., Steffien, M., Zocher, G., and Weiss, M.S. (2012). Facilities for macromolecular crystallography at the Helmholtz-Zentrum Berlin. J. Synchrotron. Radiat. 19, 442-449.
-
(2012)
J. Synchrotron. Radiat.
, vol.19
, pp. 442-449
-
-
Mueller, U.1
Darowski, N.2
Fuchs, M.R.3
Forster, R.4
Hellmig, M.5
Paithankar, K.S.6
Puhringer, S.7
Steffien, M.8
Zocher, G.9
Weiss, M.S.10
-
22
-
-
0032897075
-
Efficient anisotropic refinement of macromolecular structures using FFT
-
Murshudov, G.N., Vagin, A.A., Lebedev, A., Wilson, K.S., and Dodson, E.J. (1999). Efficient anisotropic refinement of macromolecular structures using FFT. Acta Crystallogr. D 55, 247- 255.
-
(1999)
Acta Crystallogr.
, vol.D
, Issue.55
, pp. 247-255
-
-
Murshudov, G.N.1
Vagin, A.A.2
Lebedev, A.3
Wilson, K.S.4
Dodson, E.J.5
-
23
-
-
79954609242
-
Synergistic activation of eIF4A by eIF4B and eIF4G
-
Nielsen, K.H., Behrens, M.A., He, Y., Oliveira, C.L., Jensen, L.S., Hoffmann, S.V., Pedersen, J.S., and Andersen, G.R. (2011). Synergistic activation of eIF4A by eIF4B and eIF4G. Nucleic Acids Res. 39, 2678-2689.
-
(2011)
Nucleic Acids Res.
, vol.39
, pp. 2678-2689
-
-
Nielsen, K.H.1
Behrens, M.A.2
He, Y.3
Oliveira, C.L.4
Jensen, L.S.5
Hoffmann, S.V.6
Pedersen, J.S.7
Andersen, G.R.8
-
24
-
-
0029935326
-
A human RNA helicase-like protein, HRH1, facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome
-
Ohno, M. and Shimura, Y. (1996). A human RNA helicase-like protein, HRH1, facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome. Genes Dev. 10, 997- 1007.
-
(1996)
Genes Dev.
, vol.10
, pp. 997-1007
-
-
Ohno, M.1
Shimura, Y.2
-
25
-
-
0027999516
-
Identification of a putative RNA helicase (HRH1), a human homolog of yeast Prp22
-
Ono, Y., Ohno, M., and Shimura, Y. (1994). Identification of a putative RNA helicase (HRH1), a human homolog of yeast Prp22. Mol. Cell Biol. 14, 7611-7620.
-
(1994)
Mol. Cell Biol.
, vol.14
, pp. 7611-7620
-
-
Ono, Y.1
Ohno, M.2
Shimura, Y.3
-
26
-
-
4644366388
-
HKL2MAP: A graphical user interface for phasing with SHELX programs
-
Pape, T. and Schneider, T.R. (2004). HKL2MAP: a graphical user interface for phasing with SHELX programs. J. Appl. Cryst. 37, 843-844.
-
(2004)
J. Appl. Cryst.
, vol.37
, pp. 843-844
-
-
Pape, T.1
Schneider, T.R.2
-
27
-
-
0030053370
-
ProMod and Swiss-Model: Internet-based tools for automated comparative protein modelling
-
Peitsch, M.C. (1996). ProMod and Swiss-Model: internet-based tools for automated comparative protein modelling. Biochem. Soc. Trans. 24, 274-279.
-
(1996)
Biochem. Soc. Trans.
, vol.24
, pp. 274-279
-
-
Peitsch, M.C.1
-
28
-
-
69149090973
-
Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase
-
Pena, V., Jovin, S.M., Fabrizio, P., Orlowski, J., Bujnicki, J.M., Luhrmann, R., and Wahl, M.C. (2009). Common design principles in the spliceosomal RNA helicase Brr2 and in the Hel308 DNA helicase. Mol. Cell 35, 454-466.
-
(2009)
Mol. Cell
, vol.35
, pp. 454-466
-
-
Pena, V.1
Jovin, S.M.2
Fabrizio, P.3
Orlowski, J.4
Bujnicki, J.M.5
Luhrmann, R.6
Wahl, M.C.7
-
29
-
-
0032964481
-
Automated protein model building combined with iterative structure refinement
-
Perrakis, A., Morris, R., and Lamzin, V.S. (1999). Automated protein model building combined with iterative structure refinement. Nat. Struct. Biol. 6, 458-463.
-
(1999)
Nat. Struct. Biol.
, vol.6
, pp. 458-463
-
-
Perrakis, A.1
Morris, R.2
Lamzin, V.S.3
-
30
-
-
84858077472
-
The Pfam protein families database
-
Punta, M., Coggill, P.C., Eberhardt, R.Y., Mistry, J., Tate, J., Boursnell, C., Pang, N., Forslund, K., Ceric, G., Clements, J., et al. (2012). The Pfam protein families database. Nucleic Acids Res. 40, D290- 301.
-
(2012)
Nucleic Acids Res.
, vol.40
-
-
Punta, M.1
Coggill, P.C.2
Eberhardt, R.Y.3
Mistry, J.4
Tate, J.5
Boursnell, C.6
Pang, N.7
Forslund, K.8
Ceric, G.9
Clements, J.10
-
31
-
-
48249113056
-
Translocation and unwinding mechanisms of RNA and DNA helicases
-
Pyle, A.M. (2008). Translocation and unwinding mechanisms of RNA and DNA helicases. Annu. Rev. Biophys. 37, 317-336.
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 317-336
-
-
Pyle, A.M.1
-
32
-
-
0035903136
-
Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F
-
Rogers, G.W., Jr., Richter, N.J., Lima, W.F., and Merrick, W.C. (2001). Modulation of the helicase activity of eIF4A by eIF4B, eIF4H, and eIF4F. J. Biol. Chem. 276, 30914-30922.
-
(2001)
J. Biol. Chem.
, vol.276
, pp. 30914-30922
-
-
Rogers Jr., G.W.1
Richter, N.J.2
Lima, W.F.3
Merrick, W.C.4
-
33
-
-
1542275531
-
Motifs IV and v in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8
-
Schneider, S., Campodonico, E., and Schwer, B. (2004). Motifs IV and V in the DEAH box splicing factor Prp22 are important for RNA unwinding, and helicase-defective Prp22 mutants are suppressed by Prp8. J. Biol. Chem. 279, 8617-8626.
-
(2004)
J. Biol. Chem.
, vol.279
, pp. 8617-8626
-
-
Schneider, S.1
Campodonico, E.2
Schwer, B.3
-
35
-
-
0035147544
-
A new twist on RNA helicases: DExH/D proteins as RNPases
-
Schwer, B. (2001). A new twist on RNA helicases: DExH/D proteins as RNPases. Nat. Struct. Biol. 8, 113-116.
-
(2001)
Nat. Struct. Biol.
, vol.8
, pp. 113-116
-
-
Schwer, B.1
-
36
-
-
44949117567
-
A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release
-
Schwer, B. (2008). A conformational rearrangement in the spliceosome sets the stage for Prp22-dependent mRNA release. Mol. Cell 30, 743-754.
-
(2008)
Mol. Cell
, vol.30
, pp. 743-754
-
-
Schwer, B.1
-
37
-
-
0032055765
-
Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing
-
Schwer, B. and Gross, C.H. (1998). Prp22, a DExH-box RNA helicase, plays two distinct roles in yeast pre-mRNA splicing. EMBO J. 17, 2086-2094.
-
(1998)
Embo J.
, vol.17
, pp. 2086-2094
-
-
Schwer, B.1
Gross, C.H.2
-
39
-
-
37549039510
-
A short history of SHELX
-
Sheldrick, G.M. (2008). A short history of SHELX. Acta Crystallogr. A 64, 112-122.
-
(2008)
Acta Crystallogr. A
, vol.64
, pp. 112-122
-
-
Sheldrick, G.M.1
-
41
-
-
0141430073
-
DExD/H-box proteins and their partners: Helping RNA helicases unwind
-
Silverman, E., Edwalds-Gilbert, G., and Lin, R.J. (2003). DExD/H-box proteins and their partners: helping RNA helicases unwind. Gene 312, 1-16.
-
(2003)
Gene
, vol.312
, pp. 1-16
-
-
Silverman, E.1
Edwalds-Gilbert, G.2
Lin, R.J.3
-
42
-
-
8644284892
-
Interaction between a G-patch protein and a spliceosomal DEXD/H-box ATPase that is critical for splicing
-
Silverman, E.J., Maeda, A., Wei, J., Smith, P., Beggs, J.D., and Lin, R.J. (2004). Interaction between a G-patch protein and a spliceosomal DEXD/H-box ATPase that is critical for splicing. Mol. Cell Biol. 24, 10101-10110.
-
(2004)
Mol. Cell Biol.
, vol.24
, pp. 10101-10110
-
-
Silverman, E.J.1
Maeda, A.2
Wei, J.3
Smith, P.4
Beggs, J.D.5
Lin, R.J.6
-
43
-
-
44949246374
-
Nought may endure but mutability: Spliceosome dynamics and the regulation of splicing
-
Smith, D.J., Query, C.C., and Konarska, M.M. (2008). "Nought may endure but mutability": spliceosome dynamics and the regulation of splicing. Mol. Cell 30, 657-666.
-
(2008)
Mol. Cell
, vol.30
, pp. 657-666
-
-
Smith, D.J.1
Query, C.C.2
Konarska, M.M.3
-
44
-
-
0032489021
-
Mechanical devices of the spliceosome: Motors, clocks, springs and things
-
Staley, J.P. and Guthrie, C. (1998). Mechanical devices of the spliceosome: motors, clocks, springs and things. Cell 92, 315- 326.
-
(1998)
Cell
, vol.92
, pp. 315-326
-
-
Staley, J.P.1
Guthrie, C.2
-
45
-
-
14844294424
-
Protein production by auto-induction in high density shaking cultures
-
Studier, F.W. (2005). Protein production by auto-induction in high density shaking cultures. Protein Expr. Purif. 41, 207-234.
-
(2005)
Protein Expr. Purif.
, vol.41
, pp. 207-234
-
-
Studier, F.W.1
-
46
-
-
34548842257
-
Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome
-
Tanaka, N., Aronova, A., and Schwer, B. (2007). Ntr1 activates the Prp43 helicase to trigger release of lariat-intron from the spliceosome. Genes Dev. 21, 2312-2325.
-
(2007)
Genes Dev.
, vol.21
, pp. 2312-2325
-
-
Tanaka, N.1
Aronova, A.2
Schwer, B.3
-
47
-
-
22244444183
-
Characterization of the NTPase, RNA-binding, and RNA helicase activities of the DEAH-box splicing factor Prp22
-
Tanaka, N. and Schwer, B. (2005). Characterization of the NTPase, RNA-binding, and RNA helicase activities of the DEAH-box splicing factor Prp22. Biochemistry 44, 9795-9803.
-
(2005)
Biochemistry
, vol.44
, pp. 9795-9803
-
-
Tanaka, N.1
Schwer, B.2
-
49
-
-
34347400372
-
The spliceosome: Caught in a web of shifting interactions
-
Valadkhan, S. (2007). The spliceosome: caught in a web of shifting interactions. Curr. Opin. Struct. Biol. 17, 310-315.
-
(2007)
Curr. Opin. Struct. Biol.
, vol.17
, pp. 310-315
-
-
Valadkhan, S.1
-
50
-
-
36549027357
-
Automated structure solution with autoSHARP
-
Vonrhein, C., Blanc, E., Roversi, P., and Bricogne, G. (2007). Automated structure solution with autoSHARP. Methods Mol. Biol. 364, 215-230.
-
(2007)
Methods Mol. Biol.
, vol.364
, pp. 215-230
-
-
Vonrhein, C.1
Blanc, E.2
Roversi, P.3
Bricogne, G.4
-
51
-
-
0032525149
-
The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from spliceosomes and unwinds RNA duplexes
-
Wagner, J.D.O., Jankowsky, E., Company, M., Pyle, A.M., and Abelson, J. (1998). The DEAH-box protein PRP22 is an ATPase that mediates ATP-dependent mRNA release from spliceosomes and unwinds RNA duplexes. EMBO J. 17, 2926- 2937.
-
(1998)
Embo J.
, vol.17
, pp. 2926-2937
-
-
Wagner, J.D.O.1
Jankowsky, E.2
Company, M.3
Pyle, A.M.4
Abelson, J.5
-
52
-
-
60349104299
-
The spliceosome: Design principles of a dynamic RNP machine
-
Wahl, M.C., Will, C.L., and Luhrmann, R. (2009). The spliceosome: design principles of a dynamic RNP machine. Cell 136, 701-718.
-
(2009)
Cell
, vol.136
, pp. 701-718
-
-
Wahl, M.C.1
Will, C.L.2
Luhrmann, R.3
-
53
-
-
77954958169
-
Prp43p contains a processive helicase structural architecture with a specific regulatory domain
-
Walbott, H., Mouffok, S., Capeyrou, R., Lebaron, S., Humbert, O., van Tilbeurgh, H., Henry, Y., and Leulliot, N. (2010). Prp43p contains a processive helicase structural architecture with a specific regulatory domain. EMBO J. 29, 2194-2204.
-
(2010)
Embo J.
, vol.29
, pp. 2194-2204
-
-
Walbott, H.1
Mouffok, S.2
Capeyrou, R.3
Lebaron, S.4
Humbert, O.5
Van Tilbeurgh, H.6
Henry, Y.7
Leulliot, N.8
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