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Volumn 12, Issue , 2012, Pages

Deep-sequencing transcriptome analysis of chilling tolerance mechanisms of a subnival alpine plant, Chorispora bungeana

Author keywords

Alpine plant; Chilling tolerance; Chorispora bungeana; Cold acclimation; Transcriptome

Indexed keywords

ARABIDOPSIS; CHORISPORA BUNGEANA;

EID: 84869234101     PISSN: None     EISSN: 14712229     Source Type: Journal    
DOI: 10.1186/1471-2229-12-222     Document Type: Article
Times cited : (74)

References (88)
  • 1
    • 29044437798 scopus 로고    scopus 로고
    • Association of the cold-hardiness of Chorispora bungeana with the distribution and accumulation of calcium in the cells and tissues
    • Fu XY, Chang JF, An LZ, Zhang MX, Xu SJ, Chen T, Liu YH, Xin H, Wang JH. Association of the cold-hardiness of Chorispora bungeana with the distribution and accumulation of calcium in the cells and tissues. Environ Exp Bot 2006, 55:282-293.
    • (2006) Environ Exp Bot , vol.55 , pp. 282-293
    • Fu, X.Y.1    Chang, J.F.2    An, L.Z.3    Zhang, M.X.4    Xu, S.J.5    Chen, T.6    Liu, Y.H.7    Xin, H.8    Wang, J.H.9
  • 2
    • 70350589115 scopus 로고    scopus 로고
    • Brassinosteroids alleviate chilling-induced oxidative damage by enhancing antioxidant defense system in suspension cultured cells of Chorispora bungeana
    • Liu YJ, Zhao ZG, Si J, Di CX, Han J, An LZ. Brassinosteroids alleviate chilling-induced oxidative damage by enhancing antioxidant defense system in suspension cultured cells of Chorispora bungeana. Plant Growth Regul 2009, 59:207-214.
    • (2009) Plant Growth Regul , vol.59 , pp. 207-214
    • Liu, Y.J.1    Zhao, Z.G.2    Si, J.3    Di, C.X.4    Han, J.5    An, L.Z.6
  • 3
    • 43149118330 scopus 로고    scopus 로고
    • Regulation of the plasma membrane during exposure to low temperatures in suspension-cultured cells from a cryophyte (Chorispora bungeana)
    • 10.1007/s00709-008-0291-1, 18421547
    • Shi Y, An L, Zhang M, Huang C, Zhang H, Xu S. Regulation of the plasma membrane during exposure to low temperatures in suspension-cultured cells from a cryophyte (Chorispora bungeana). Protoplasma 2008, 232:173-181. 10.1007/s00709-008-0291-1, 18421547.
    • (2008) Protoplasma , vol.232 , pp. 173-181
    • Shi, Y.1    An, L.2    Zhang, M.3    Huang, C.4    Zhang, H.5    Xu, S.6
  • 4
    • 33644812462 scopus 로고    scopus 로고
    • Relation of several antioxidant enzymes to rapid freezing resistance in suspension cultured cells from alpine Chorispora bungeana
    • 10.1016/j.cryobiol.2005.12.001, 16426599
    • Guo FX, Zhang MX, Chen Y, Zhang WH, Xu SJ, Wang JH, An LZ. Relation of several antioxidant enzymes to rapid freezing resistance in suspension cultured cells from alpine Chorispora bungeana. Cryobiology 2006, 52:241-250. 10.1016/j.cryobiol.2005.12.001, 16426599.
    • (2006) Cryobiology , vol.52 , pp. 241-250
    • Guo, F.X.1    Zhang, M.X.2    Chen, Y.3    Zhang, W.H.4    Xu, S.J.5    Wang, J.H.6    An, L.Z.7
  • 5
    • 78650975361 scopus 로고    scopus 로고
    • Effect of inoculation with the endophyte Clavibacter sp. strain Enf12 on chilling tolerance in Chorispora bungeana
    • 10.1111/j.1399-3054.2010.01428.x, 21044086
    • Ding S, Huang CL, Sheng HM, Song CL, Li YB, An LZ. Effect of inoculation with the endophyte Clavibacter sp. strain Enf12 on chilling tolerance in Chorispora bungeana. Physiol Plant 2011, 141:141-151. 10.1111/j.1399-3054.2010.01428.x, 21044086.
    • (2011) Physiol Plant , vol.141 , pp. 141-151
    • Ding, S.1    Huang, C.L.2    Sheng, H.M.3    Song, C.L.4    Li, Y.B.5    An, L.Z.6
  • 6
    • 33947373452 scopus 로고    scopus 로고
    • Effects of freezing on plasma membrane H + -ATPase of the callus from Chorispora bungeana
    • Wu JM, Zhao ZG, Xing H, Guo HP, Li WX, An LZ, Xu SJ, Chen T. Effects of freezing on plasma membrane H + -ATPase of the callus from Chorispora bungeana. Biol Plant 2007, 51:229-234.
    • (2007) Biol Plant , vol.51 , pp. 229-234
    • Wu, J.M.1    Zhao, Z.G.2    Xing, H.3    Guo, H.P.4    Li, W.X.5    An, L.Z.6    Xu, S.J.7    Chen, T.8
  • 7
    • 0842286227 scopus 로고
    • Cold accelimation and freezing stress tolerance: role of protein metabolism
    • Guy CL. Cold accelimation and freezing stress tolerance: role of protein metabolism. Annu Rev Plant Biol 1990, 41:187-223.
    • (1990) Annu Rev Plant Biol , vol.41 , pp. 187-223
    • Guy, C.L.1
  • 8
    • 0033498862 scopus 로고    scopus 로고
    • Plant cold acclimation: freezing tolerance genes and regulatory mechanisms
    • Thomashow MF. Plant cold acclimation: freezing tolerance genes and regulatory mechanisms. Ann Rev Plant Physiol Plant Mol Biol 1999, 50:571-599.
    • (1999) Ann Rev Plant Physiol Plant Mol Biol , vol.50 , pp. 571-599
    • Thomashow, M.F.1
  • 9
    • 0041969374 scopus 로고
    • Cold acclimation of hedera helix: evidence for a two phase process
    • 10.1104/pp.47.2.175, 365835, 16657589
    • Steponkus PL. Cold acclimation of hedera helix: evidence for a two phase process. Plant Physiol 1971, 47:175-180. 10.1104/pp.47.2.175, 365835, 16657589.
    • (1971) Plant Physiol , vol.47 , pp. 175-180
    • Steponkus, P.L.1
  • 10
    • 0000937182 scopus 로고
    • Solute accumulation and compartmentation during the cold acclimation of puma rye
    • 10.1104/pp.98.1.108, 1080156, 16668599
    • Koster KL, Lynch DV. Solute accumulation and compartmentation during the cold acclimation of puma rye. Plant Physiol 1992, 98:108-113. 10.1104/pp.98.1.108, 1080156, 16668599.
    • (1992) Plant Physiol , vol.98 , pp. 108-113
    • Koster, K.L.1    Lynch, D.V.2
  • 11
    • 9344238199 scopus 로고    scopus 로고
    • Solute accumulation in heat seedlings during cold acclimation: contribution to increased freezing tolerance
    • Kamata T, Uemura M. Solute accumulation in heat seedlings during cold acclimation: contribution to increased freezing tolerance. Cryo Letters 2004, 25:311-322.
    • (2004) Cryo Letters , vol.25 , pp. 311-322
    • Kamata, T.1    Uemura, M.2
  • 12
    • 0000259838 scopus 로고
    • Evaluation of polyamine and proline levels during low temperature acclimation of citrus
    • 10.1104/pp.84.3.692, 1056652, 16665504
    • Kushad MM, Yelenosky G. Evaluation of polyamine and proline levels during low temperature acclimation of citrus. Plant Physiol 1987, 84:692-695. 10.1104/pp.84.3.692, 1056652, 16665504.
    • (1987) Plant Physiol , vol.84 , pp. 692-695
    • Kushad, M.M.1    Yelenosky, G.2
  • 13
    • 0344094678 scopus 로고
    • Relationship of electrical conductance at two frequencies to cold injury and acclimation in cornus stolonifera Michx
    • 10.1104/pp.47.2.204, 365842, 16657596
    • Evert DR, Weiser CJ. Relationship of electrical conductance at two frequencies to cold injury and acclimation in cornus stolonifera Michx. Plant Physiol 1971, 47:204-208. 10.1104/pp.47.2.204, 365842, 16657596.
    • (1971) Plant Physiol , vol.47 , pp. 204-208
    • Evert, D.R.1    Weiser, C.J.2
  • 14
    • 0342632886 scopus 로고
    • Structural and functional responses of wheat mitochondrial membranes to growth at low temperatures
    • 10.1104/pp.53.3.426, 543240, 16658718
    • Miller RW, de la Roche I, Pomeroy MK. Structural and functional responses of wheat mitochondrial membranes to growth at low temperatures. Plant Physiol 1974, 53:426-433. 10.1104/pp.53.3.426, 543240, 16658718.
    • (1974) Plant Physiol , vol.53 , pp. 426-433
    • Miller, R.W.1    de la Roche, I.2    Pomeroy, M.K.3
  • 15
    • 8044247871 scopus 로고
    • Maintenance of membrane fluidity during development of freezing tolerance of winter wheat seedlings
    • 10.1104/pp.68.2.382, 427495, 16661921
    • Pomeroy MK, Raison JK. Maintenance of membrane fluidity during development of freezing tolerance of winter wheat seedlings. Plant Physiol 1981, 68:382-385. 10.1104/pp.68.2.382, 427495, 16661921.
    • (1981) Plant Physiol , vol.68 , pp. 382-385
    • Pomeroy, M.K.1    Raison, J.K.2
  • 16
    • 1842417084 scopus 로고
    • Plasma membrane alterations in callus tissues of tuber-bearing solanum species during cold acclimation
    • 10.1104/pp.67.3.478, 425709, 16661698
    • Toivio-Kinnucan MA, Chen HH, Li PH, Stushnoff C. Plasma membrane alterations in callus tissues of tuber-bearing solanum species during cold acclimation. Plant Physiol 1981, 67:478-483. 10.1104/pp.67.3.478, 425709, 16661698.
    • (1981) Plant Physiol , vol.67 , pp. 478-483
    • Toivio-Kinnucan, M.A.1    Chen, H.H.2    Li, P.H.3    Stushnoff, C.4
  • 17
    • 4344632289 scopus 로고    scopus 로고
    • Anthocyanins and glutathione S-transferase activities in response to low temperature and frost hardening in Vaccinium myrtillus (L.)
    • 10.1016/j.jplph.2003.12.001, 15384401
    • Taulavuori E, Tahkokorpi M, Taulavuori K, Laine K. Anthocyanins and glutathione S-transferase activities in response to low temperature and frost hardening in Vaccinium myrtillus (L.). J Plant Physiol 2004, 161:903-911. 10.1016/j.jplph.2003.12.001, 15384401.
    • (2004) J Plant Physiol , vol.161 , pp. 903-911
    • Taulavuori, E.1    Tahkokorpi, M.2    Taulavuori, K.3    Laine, K.4
  • 18
    • 43449129747 scopus 로고    scopus 로고
    • Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance
    • 10.1111/j.1365-3040.2008.01800.x, 2440548, 18284584
    • Korn M, Peterek S, Mock HP, Heyer AG, Hincha DK. Heterosis in the freezing tolerance, and sugar and flavonoid contents of crosses between Arabidopsis thaliana accessions of widely varying freezing tolerance. Plant Cell Environ 2008, 31:813-827. 10.1111/j.1365-3040.2008.01800.x, 2440548, 18284584.
    • (2008) Plant Cell Environ , vol.31 , pp. 813-827
    • Korn, M.1    Peterek, S.2    Mock, H.P.3    Heyer, A.G.4    Hincha, D.K.5
  • 19
    • 79960530063 scopus 로고    scopus 로고
    • A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana
    • 10.1093/jxb/err066, 3134341, 21511909
    • Carvallo MA, Pino MT, Jeknic Z, Zou C, Doherty CJ, Shiu SH, Chen TH, Thomashow MF. A comparison of the low temperature transcriptomes and CBF regulons of three plant species that differ in freezing tolerance: Solanum commersonii, Solanum tuberosum, and Arabidopsis thaliana. J Exp Bot 2011, 62:3807-3819. 10.1093/jxb/err066, 3134341, 21511909.
    • (2011) J Exp Bot , vol.62 , pp. 3807-3819
    • Carvallo, M.A.1    Pino, M.T.2    Jeknic, Z.3    Zou, C.4    Doherty, C.J.5    Shiu, S.H.6    Chen, T.H.7    Thomashow, M.F.8
  • 20
    • 0031017671 scopus 로고    scopus 로고
    • Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit
    • 10.1073/pnas.94.3.1035, 19635, 9023378
    • Stockinger EJ, Gilmour SJ, Thomashow MF. Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit. Proc Natl Acad Sci U S A 1997, 94:1035-1040. 10.1073/pnas.94.3.1035, 19635, 9023378.
    • (1997) Proc Natl Acad Sci U S A , vol.94 , pp. 1035-1040
    • Stockinger, E.J.1    Gilmour, S.J.2    Thomashow, M.F.3
  • 21
    • 0032478635 scopus 로고    scopus 로고
    • Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance
    • 10.1126/science.280.5360.104, 9525853
    • Jaglo-Ottosen KR, Gilmour SJ, Zarka DG, Schabenberger O, Thomashow MF. Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance. Science 1998, 280:104-106. 10.1126/science.280.5360.104, 9525853.
    • (1998) Science , vol.280 , pp. 104-106
    • Jaglo-Ottosen, K.R.1    Gilmour, S.J.2    Zarka, D.G.3    Schabenberger, O.4    Thomashow, M.F.5
  • 22
    • 0032144961 scopus 로고    scopus 로고
    • Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis
    • 144379, 9707537
    • Liu Q, Kasuga M, Sakuma Y, Abe H, Miura S, Yamaguchi-Shinozaki K, Shinozaki K. Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought- and low-temperature-responsive gene expression, respectively, in Arabidopsis. Plant Cell 1998, 10:1391-1406. 144379, 9707537.
    • (1998) Plant Cell , vol.10 , pp. 1391-1406
    • Liu, Q.1    Kasuga, M.2    Sakuma, Y.3    Abe, H.4    Miura, S.5    Yamaguchi-Shinozaki, K.6    Shinozaki, K.7
  • 23
    • 0033080470 scopus 로고    scopus 로고
    • The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration
    • 10.1104/pp.119.2.463, 32122, 9952441
    • Medina J, Bargues M, Terol J, Perez-Alonso M, Salinas J. The Arabidopsis CBF gene family is composed of three genes encoding AP2 domain-containing proteins whose expression Is regulated by low temperature but not by abscisic acid or dehydration. Plant Physiol 1999, 119:463-470. 10.1104/pp.119.2.463, 32122, 9952441.
    • (1999) Plant Physiol , vol.119 , pp. 463-470
    • Medina, J.1    Bargues, M.2    Terol, J.3    Perez-Alonso, M.4    Salinas, J.5
  • 24
    • 0032497260 scopus 로고    scopus 로고
    • An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression
    • 10.1006/bbrc.1998.9267, 9735350
    • Shinwari ZK, Nakashima K, Miura S, Kasuga M, Seki M, Yamaguchi-Shinozaki K, Shinozaki K. An Arabidopsis gene family encoding DRE/CRT binding proteins involved in low-temperature-responsive gene expression. Biochem Biophys Res Commun 1998, 250:161-170. 10.1006/bbrc.1998.9267, 9735350.
    • (1998) Biochem Biophys Res Commun , vol.250 , pp. 161-170
    • Shinwari, Z.K.1    Nakashima, K.2    Miura, S.3    Kasuga, M.4    Seki, M.5    Yamaguchi-Shinozaki, K.6    Shinozaki, K.7
  • 25
    • 0034527513 scopus 로고    scopus 로고
    • Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation
    • 10.1104/pp.124.4.1854, 59880, 11115899
    • Gilmour SJ, Sebolt AM, Salazar MP, Everard JD, Thomashow MF. Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation. Plant Physiol 2000, 124:1854-1865. 10.1104/pp.124.4.1854, 59880, 11115899.
    • (2000) Plant Physiol , vol.124 , pp. 1854-1865
    • Gilmour, S.J.1    Sebolt, A.M.2    Salazar, M.P.3    Everard, J.D.4    Thomashow, M.F.5
  • 26
    • 66449131193 scopus 로고    scopus 로고
    • Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance
    • 10.1105/tpc.108.063958, 2671710, 19270186
    • Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF. Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance. Plant Cell 2009, 21:972-984. 10.1105/tpc.108.063958, 2671710, 19270186.
    • (2009) Plant Cell , vol.21 , pp. 972-984
    • Doherty, C.J.1    Van Buskirk, H.A.2    Myers, S.J.3    Thomashow, M.F.4
  • 27
    • 35649003891 scopus 로고    scopus 로고
    • Light-quality regulation of freezing tolerance in Arabidopsis thaliana
    • 10.1038/ng.2007.3, 17965713
    • Franklin KA, Whitelam GC. Light-quality regulation of freezing tolerance in Arabidopsis thaliana. Nat Genet 2007, 39:1410-1413. 10.1038/ng.2007.3, 17965713.
    • (2007) Nat Genet , vol.39 , pp. 1410-1413
    • Franklin, K.A.1    Whitelam, G.C.2
  • 28
    • 79955551575 scopus 로고    scopus 로고
    • Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis
    • 10.1073/pnas.1103741108, 3084081, 21471455
    • Dong MA, Farre EM, Thomashow MF. Circadian clock-associated 1 and late elongated hypocotyl regulate expression of the C-repeat binding factor (CBF) pathway in Arabidopsis. Proc Natl Acad Sci U S A 2011, 108:7241-7246. 10.1073/pnas.1103741108, 3084081, 21471455.
    • (2011) Proc Natl Acad Sci U S A , vol.108 , pp. 7241-7246
    • Dong, M.A.1    Farre, E.M.2    Thomashow, M.F.3
  • 29
    • 34547573252 scopus 로고    scopus 로고
    • Use of a stress inducible promoter to drive ectopic AtCBF expression improves potato freezing tolerance while minimizing negative effects on tuber yield
    • 10.1111/j.1467-7652.2007.00269.x, 17559519
    • Pino MT, Skinner JS, Park EJ, Jeknic Z, Hayes PM, Thomashow MF, Chen TH. Use of a stress inducible promoter to drive ectopic AtCBF expression improves potato freezing tolerance while minimizing negative effects on tuber yield. Plant Biotechnol J 2007, 5:591-604. 10.1111/j.1467-7652.2007.00269.x, 17559519.
    • (2007) Plant Biotechnol J , vol.5 , pp. 591-604
    • Pino, M.T.1    Skinner, J.S.2    Park, E.J.3    Jeknic, Z.4    Hayes, P.M.5    Thomashow, M.F.6    Chen, T.H.7
  • 30
    • 33744470399 scopus 로고    scopus 로고
    • The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp
    • 10.1111/j.1365-3040.2006.01505.x, 17080948
    • Benedict C, Skinner JS, Meng R, Chang Y, Bhalerao R, Huner NP, Finn CE, Chen TH, Hurry V. The CBF1-dependent low temperature signalling pathway, regulon and increase in freeze tolerance are conserved in Populus spp. Plant Cell Environ 2006, 29:1259-1272. 10.1111/j.1365-3040.2006.01505.x, 17080948.
    • (2006) Plant Cell Environ , vol.29 , pp. 1259-1272
    • Benedict, C.1    Skinner, J.S.2    Meng, R.3    Chang, Y.4    Bhalerao, R.5    Huner, N.P.6    Finn, C.E.7    Chen, T.H.8    Hurry, V.9
  • 31
    • 0035984065 scopus 로고    scopus 로고
    • Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato
    • 10.1104/pp.003442, 166503, 12114563
    • Hsieh TH, Lee JT, Yang PT, Chiu LH, Charng YY, Wang YC, Chan MT. Heterology expression of the Arabidopsis C-repeat/dehydration response element binding factor 1 gene confers elevated tolerance to chilling and oxidative stresses in transgenic tomato. Plant Physiol 2002, 129:1086-1094. 10.1104/pp.003442, 166503, 12114563.
    • (2002) Plant Physiol , vol.129 , pp. 1086-1094
    • Hsieh, T.H.1    Lee, J.T.2    Yang, P.T.3    Chiu, L.H.4    Charng, Y.Y.5    Wang, Y.C.6    Chan, M.T.7
  • 32
    • 0037297787 scopus 로고    scopus 로고
    • OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression
    • 10.1046/j.1365-313X.2003.01661.x, 12609047
    • Dubouzet JG, Sakuma Y, Ito Y, Kasuga M, Dubouzet EG, Miura S, Seki M, Shinozaki K, Yamaguchi-Shinozaki K. OsDREB genes in rice, Oryza sativa L., encode transcription activators that function in drought-, high-salt- and cold-responsive gene expression. Plant J 2003, 33:751-763. 10.1046/j.1365-313X.2003.01661.x, 12609047.
    • (2003) Plant J , vol.33 , pp. 751-763
    • Dubouzet, J.G.1    Sakuma, Y.2    Ito, Y.3    Kasuga, M.4    Dubouzet, E.G.5    Miura, S.6    Seki, M.7    Shinozaki, K.8    Yamaguchi-Shinozaki, K.9
  • 33
    • 12844280128 scopus 로고    scopus 로고
    • Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis
    • Vogel JT, Zarka DG, Van Buskirk HA, Fowler SG, Thomashow MF. Roles of the CBF2 and ZAT12 transcription factors in configuring the low temperature transcriptome of Arabidopsis. Plant J 2005, 41:195-211.
    • (2005) Plant J , vol.41 , pp. 195-211
    • Vogel, J.T.1    Zarka, D.G.2    Van Buskirk, H.A.3    Fowler, S.G.4    Thomashow, M.F.5
  • 34
    • 0036671216 scopus 로고    scopus 로고
    • Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
    • 10.1105/tpc.003483, 151458, 12172015
    • Fowler S, Thomashow MF. Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway. Plant Cell 2002, 14:1675-1690. 10.1105/tpc.003483, 151458, 12172015.
    • (2002) Plant Cell , vol.14 , pp. 1675-1690
    • Fowler, S.1    Thomashow, M.F.2
  • 35
    • 0035198080 scopus 로고    scopus 로고
    • Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species
    • 10.1104/pp.010548, 129262, 11706173
    • Jaglo KR, Kleff S, Amundsen KL, Zhang X, Haake V, Zhang JZ, Deits T, Thomashow MF. Components of the Arabidopsis C-repeat/dehydration-responsive element binding factor cold-response pathway are conserved in Brassica napus and other plant species. Plant Physiol 2001, 127:910-917. 10.1104/pp.010548, 129262, 11706173.
    • (2001) Plant Physiol , vol.127 , pp. 910-917
    • Jaglo, K.R.1    Kleff, S.2    Amundsen, K.L.3    Zhang, X.4    Haake, V.5    Zhang, J.Z.6    Deits, T.7    Thomashow, M.F.8
  • 36
    • 77649287721 scopus 로고    scopus 로고
    • Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress
    • 10.1186/1471-2229-10-16, 2826336, 20100339
    • Yun KY, Park MR, Mohanty B, Herath V, Xu F, Mauleon R, Wijaya E, Bajic VB, Bruskiewich R, de Los Reyes BG. Transcriptional regulatory network triggered by oxidative signals configures the early response mechanisms of japonica rice to chilling stress. BMC Plant Biol 2010, 10:16. 10.1186/1471-2229-10-16, 2826336, 20100339.
    • (2010) BMC Plant Biol , vol.10 , pp. 16
    • Yun, K.Y.1    Park, M.R.2    Mohanty, B.3    Herath, V.4    Xu, F.5    Mauleon, R.6    Wijaya, E.7    Bajic, V.B.8    Bruskiewich, R.9    de Los Reyes, B.G.10
  • 37
    • 79952412970 scopus 로고    scopus 로고
    • Transcriptome analysis of the vernalization response in barley (Hordeum vulgare) seedlings
    • 10.1371/journal.pone.0017900, 3052371, 21408015
    • Greenup AG, Sasani S, Oliver SN, Walford SA, Millar AA, Trevaskis B. Transcriptome analysis of the vernalization response in barley (Hordeum vulgare) seedlings. PLoS One 2011, 6:e17900. 10.1371/journal.pone.0017900, 3052371, 21408015.
    • (2011) PLoS One , vol.6
    • Greenup, A.G.1    Sasani, S.2    Oliver, S.N.3    Walford, S.A.4    Millar, A.A.5    Trevaskis, B.6
  • 38
    • 67349254731 scopus 로고    scopus 로고
    • Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae)
    • 10.1016/j.gene.2008.06.024, 18640249
    • Zhou D, Zhou J, Meng L, Wang Q, Xie H, Guan Y, Ma Z, Zhong Y, Chen F, Liu J. Duplication and adaptive evolution of the COR15 genes within the highly cold-tolerant Draba lineage (Brassicaceae). Gene 2009, 441:36-44. 10.1016/j.gene.2008.06.024, 18640249.
    • (2009) Gene , vol.441 , pp. 36-44
    • Zhou, D.1    Zhou, J.2    Meng, L.3    Wang, Q.4    Xie, H.5    Guan, Y.6    Ma, Z.7    Zhong, Y.8    Chen, F.9    Liu, J.10
  • 39
    • 84873702675 scopus 로고    scopus 로고
    • The Netherlands: Universiteit van Amsterdam, The Institute for Biodiversity and Ecosystem Dynamics (IBED) and the Swammerdam Institute for Life Sciences (SILS)
    • von Meijenfeldt N. Unraveling the cold response in Draba. PhD thesis 2010, The Netherlands: Universiteit van Amsterdam, The Institute for Biodiversity and Ecosystem Dynamics (IBED) and the Swammerdam Institute for Life Sciences (SILS).
    • (2010) Unraveling the cold response in Draba. PhD thesis
    • von Meijenfeldt, N.1
  • 40
    • 80053949739 scopus 로고    scopus 로고
    • PR-10, defensin and cold dehydrin genes are among those over expressed in Oxytropis (Fabaceae) species adapted to the arctic
    • 10.1007/s10142-011-0223-6, 3156302, 21499864
    • Archambault A, Stromvik MV. PR-10, defensin and cold dehydrin genes are among those over expressed in Oxytropis (Fabaceae) species adapted to the arctic. Funct Integr Genomics 2011, 11:497-505. 10.1007/s10142-011-0223-6, 3156302, 21499864.
    • (2011) Funct Integr Genomics , vol.11 , pp. 497-505
    • Archambault, A.1    Stromvik, M.V.2
  • 43
    • 0037460985 scopus 로고    scopus 로고
    • TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets
    • 10.1093/bioinformatics/btg034, 12651724
    • Pertea G, Huang X, Liang F, Antonescu V, Sultana R, Karamycheva S, Lee Y, White J, Cheung F, Parvizi B, et al. TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 2003, 19:651-652. 10.1093/bioinformatics/btg034, 12651724.
    • (2003) Bioinformatics , vol.19 , pp. 651-652
    • Pertea, G.1    Huang, X.2    Liang, F.3    Antonescu, V.4    Sultana, R.5    Karamycheva, S.6    Lee, Y.7    White, J.8    Cheung, F.9    Parvizi, B.10
  • 44
    • 67650711615 scopus 로고    scopus 로고
    • SOAP2: an improved ultrafast tool for short read alignment
    • 10.1093/bioinformatics/btp336, 19497933
    • Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009, 25:1966-1967. 10.1093/bioinformatics/btp336, 19497933.
    • (2009) Bioinformatics , vol.25 , pp. 1966-1967
    • Li, R.1    Yu, C.2    Li, Y.3    Lam, T.W.4    Yiu, S.M.5    Kristiansen, K.6    Wang, J.7
  • 45
    • 84859501783 scopus 로고    scopus 로고
    • De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode
    • 10.1186/1471-2164-13-133, 3439707, 22494814
    • Xu DL, Long H, Liang JJ, Zhang J, Chen X, Li JL, Pan ZF, Deng GB, Yu MQ. De novo assembly and characterization of the root transcriptome of Aegilops variabilis during an interaction with the cereal cyst nematode. BMC Genomics 2012, 13:133. 10.1186/1471-2164-13-133, 3439707, 22494814.
    • (2012) BMC Genomics , vol.13 , pp. 133
    • Xu, D.L.1    Long, H.2    Liang, J.J.3    Zhang, J.4    Chen, X.5    Li, J.L.6    Pan, Z.F.7    Deng, G.B.8    Yu, M.Q.9
  • 46
    • 34250683382 scopus 로고    scopus 로고
    • Arabidopsis Cor15am is a chloroplast stromal protein that has cryoprotective activity and forms oligomers
    • 10.1104/pp.106.094581, 1913801, 17384167
    • Nakayama K, Okawa K, Kakizaki T, Honma T, Itoh H, Inaba T. Arabidopsis Cor15am is a chloroplast stromal protein that has cryoprotective activity and forms oligomers. Plant Physiol 2007, 144:513-523. 10.1104/pp.106.094581, 1913801, 17384167.
    • (2007) Plant Physiol , vol.144 , pp. 513-523
    • Nakayama, K.1    Okawa, K.2    Kakizaki, T.3    Honma, T.4    Itoh, H.5    Inaba, T.6
  • 47
    • 79956098378 scopus 로고    scopus 로고
    • Genome-scale transcriptome analysis of the desert poplar, Populus euphratica
    • 10.1093/treephys/tpr015, 21427158
    • Qiu Q, Ma T, Hu Q, Liu B, Wu Y, Zhou H, Wang Q, Wang J, Liu J. Genome-scale transcriptome analysis of the desert poplar, Populus euphratica. Tree Physiology 2011, 31:452-461. 10.1093/treephys/tpr015, 21427158.
    • (2011) Tree Physiology , vol.31 , pp. 452-461
    • Qiu, Q.1    Ma, T.2    Hu, Q.3    Liu, B.4    Wu, Y.5    Zhou, H.6    Wang, Q.7    Wang, J.8    Liu, J.9
  • 48
    • 79959841120 scopus 로고    scopus 로고
    • Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing
    • 10.1186/1471-2164-12-342, 3161972, 21729267
    • Wong MM, Cannon CH, Wickneswari R. Identification of lignin genes and regulatory sequences involved in secondary cell wall formation in Acacia auriculiformis and Acacia mangium via de novo transcriptome sequencing. BMC Genomics 2011, 12:342. 10.1186/1471-2164-12-342, 3161972, 21729267.
    • (2011) BMC Genomics , vol.12 , pp. 342
    • Wong, M.M.1    Cannon, C.H.2    Wickneswari, R.3
  • 49
    • 24044440971 scopus 로고    scopus 로고
    • BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks
    • 10.1093/bioinformatics/bti551, 15972284
    • Maere S, Heymans K, Kuiper M. BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks. Bioinformatics 2005, 21:3448-3449. 10.1093/bioinformatics/bti551, 15972284.
    • (2005) Bioinformatics , vol.21 , pp. 3448-3449
    • Maere, S.1    Heymans, K.2    Kuiper, M.3
  • 50
    • 0031277694 scopus 로고    scopus 로고
    • Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways
    • 157048, 9401119
    • Ishitani M, Xiong L, Stevenson B, Zhu JK. Genetic analysis of osmotic and cold stress signal transduction in Arabidopsis: interactions and convergence of abscisic acid-dependent and abscisic acid-independent pathways. Plant Cell 1997, 9:1935-1949. 157048, 9401119.
    • (1997) Plant Cell , vol.9 , pp. 1935-1949
    • Ishitani, M.1    Xiong, L.2    Stevenson, B.3    Zhu, J.K.4
  • 52
    • 60249084572 scopus 로고    scopus 로고
    • Karrikins discovered in smoke trigger Arabidopsis seed germination by a mechanism requiring gibberellic acid synthesis and light
    • 2633839, 19074625
    • Nelson DC, Riseborough JA, Flematti GR, Stevens J, Ghisalberti EL, Dixon KW, Smith SM. Karrikins discovered in smoke trigger Arabidopsis seed germination by a mechanism requiring gibberellic acid synthesis and light. Plant Physiol 2009, 149:863-873. 2633839, 19074625.
    • (2009) Plant Physiol , vol.149 , pp. 863-873
    • Nelson, D.C.1    Riseborough, J.A.2    Flematti, G.R.3    Stevens, J.4    Ghisalberti, E.L.5    Dixon, K.W.6    Smith, S.M.7
  • 53
    • 3042630010 scopus 로고    scopus 로고
    • Salicylate accumulation inhibits growth at chilling temperature in Arabidopsis
    • 10.1104/pp.104.041293, 514138, 15173571
    • Scott IM, Clarke SM, Wood JE, Mur LA. Salicylate accumulation inhibits growth at chilling temperature in Arabidopsis. Plant Physiol 2004, 135:1040-1049. 10.1104/pp.104.041293, 514138, 15173571.
    • (2004) Plant Physiol , vol.135 , pp. 1040-1049
    • Scott, I.M.1    Clarke, S.M.2    Wood, J.E.3    Mur, L.A.4
  • 54
    • 0036929398 scopus 로고    scopus 로고
    • Jasmonate and salicylate induce the expression of pathogenesis-related-protein genes and increase resistance to chilling injury in tomato fruit
    • 10.1007/s00425-001-0698-9, 11941466
    • Ding CK, Wang CY, Gross KC, Smith DL. Jasmonate and salicylate induce the expression of pathogenesis-related-protein genes and increase resistance to chilling injury in tomato fruit. Planta 2002, 214:895-901. 10.1007/s00425-001-0698-9, 11941466.
    • (2002) Planta , vol.214 , pp. 895-901
    • Ding, C.K.1    Wang, C.Y.2    Gross, K.C.3    Smith, D.L.4
  • 55
    • 77957745042 scopus 로고    scopus 로고
    • A gain-of-function mutation in the Arabidopsis disease resistance gene RPP4 confers sensitivity to low temperature
    • 10.1104/pp.110.157610, 2949010, 20699401
    • Huang X, Li J, Bao F, Zhang X, Yang S. A gain-of-function mutation in the Arabidopsis disease resistance gene RPP4 confers sensitivity to low temperature. Plant Physiol 2010, 154:796-809. 10.1104/pp.110.157610, 2949010, 20699401.
    • (2010) Plant Physiol , vol.154 , pp. 796-809
    • Huang, X.1    Li, J.2    Bao, F.3    Zhang, X.4    Yang, S.5
  • 56
    • 0031956098 scopus 로고    scopus 로고
    • Low temperature signal transduction during cold acclimation: protein phosphatase 2A as an early target for cold-inactivation
    • Monroy AF, Sangwan V, Dhindsa RS. Low temperature signal transduction during cold acclimation: protein phosphatase 2A as an early target for cold-inactivation. Plant J 1998, 13:653-660.
    • (1998) Plant J , vol.13 , pp. 653-660
    • Monroy, A.F.1    Sangwan, V.2    Dhindsa, R.S.3
  • 57
    • 12044259918 scopus 로고
    • Cold-Induced Changes in Freezing Tolerance, Protein Phosphorylation, and Gene Expression (Evidence for a Role of Calcium)
    • 158909, 12231898
    • Monroy AF, Sarhan F, Dhindsa RS. Cold-Induced Changes in Freezing Tolerance, Protein Phosphorylation, and Gene Expression (Evidence for a Role of Calcium). Plant Physiol 1993, 102:1227-1235. 158909, 12231898.
    • (1993) Plant Physiol , vol.102 , pp. 1227-1235
    • Monroy, A.F.1    Sarhan, F.2    Dhindsa, R.S.3
  • 58
    • 3042801230 scopus 로고    scopus 로고
    • The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis
    • 10.1016/j.molcel.2004.06.023, 15225555
    • Teige M, Scheikl E, Eulgem T, Doczi R, Ichimura K, Shinozaki K, Dangl JL, Hirt H. The MKK2 pathway mediates cold and salt stress signaling in Arabidopsis. Mol Cell 2004, 15:141-152. 10.1016/j.molcel.2004.06.023, 15225555.
    • (2004) Mol Cell , vol.15 , pp. 141-152
    • Teige, M.1    Scheikl, E.2    Eulgem, T.3    Doczi, R.4    Ichimura, K.5    Shinozaki, K.6    Dangl, J.L.7    Hirt, H.8
  • 59
    • 0037008220 scopus 로고    scopus 로고
    • Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice
    • 10.1104/pp.006072, 166777, 12177502
    • Wen JQ, Oono K, Imai R. Two novel mitogen-activated protein signaling components, OsMEK1 and OsMAP1, are involved in a moderate low-temperature signaling pathway in rice. Plant Physiol 2002, 129:1880-1891. 10.1104/pp.006072, 166777, 12177502.
    • (2002) Plant Physiol , vol.129 , pp. 1880-1891
    • Wen, J.Q.1    Oono, K.2    Imai, R.3
  • 60
    • 0033624156 scopus 로고    scopus 로고
    • Over-expression of a single Ca2 + -dependent protein kinase confers both cold and salt/drought tolerance on rice plants
    • 10.1046/j.1365-313x.2000.00787.x, 10929125
    • Saijo Y, Hata S, Kyozuka J, Shimamoto K, Izui K. Over-expression of a single Ca2 + -dependent protein kinase confers both cold and salt/drought tolerance on rice plants. Plant J 2000, 23:319-327. 10.1046/j.1365-313x.2000.00787.x, 10929125.
    • (2000) Plant J , vol.23 , pp. 319-327
    • Saijo, Y.1    Hata, S.2    Kyozuka, J.3    Shimamoto, K.4    Izui, K.5
  • 61
    • 0035543272 scopus 로고    scopus 로고
    • A Ca(2+)-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles
    • 10.1093/pcp/pce158, 11726707
    • Saijo Y, Kinoshita N, Ishiyama K, Hata S, Kyozuka J, Hayakawa T, Nakamura T, Shimamoto K, Yamaya T, Izui K. A Ca(2+)-dependent protein kinase that endows rice plants with cold- and salt-stress tolerance functions in vascular bundles. Plant Cell Physiol 2001, 42:1228-1233. 10.1093/pcp/pce158, 11726707.
    • (2001) Plant Cell Physiol , vol.42 , pp. 1228-1233
    • Saijo, Y.1    Kinoshita, N.2    Ishiyama, K.3    Hata, S.4    Kyozuka, J.5    Hayakawa, T.6    Nakamura, T.7    Shimamoto, K.8    Yamaya, T.9    Izui, K.10
  • 62
    • 16644366650 scopus 로고    scopus 로고
    • OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath
    • 10.1007/s11103-004-1178-y, 15604699
    • Abbasi F, Onodera H, Toki S, Tanaka H, Komatsu S. OsCDPK13, a calcium-dependent protein kinase gene from rice, is induced by cold and gibberellin in rice leaf sheath. Plant Mol Biol 2004, 55:541-552. 10.1007/s11103-004-1178-y, 15604699.
    • (2004) Plant Mol Biol , vol.55 , pp. 541-552
    • Abbasi, F.1    Onodera, H.2    Toki, S.3    Tanaka, H.4    Komatsu, S.5
  • 63
    • 34548599762 scopus 로고    scopus 로고
    • PaCDPK1, a gene encoding calcium-dependent protein kinase from orchid, Phalaenopsis amabilis, is induced by cold, wounding, and pathogen challenge
    • 10.1007/s00299-007-0389-5, 17593367
    • Tsai TM, Chen YR, Kao TW, Tsay WS, Wu CP, Huang DD, Chen WH, Chang CC, Huang HJ. PaCDPK1, a gene encoding calcium-dependent protein kinase from orchid, Phalaenopsis amabilis, is induced by cold, wounding, and pathogen challenge. Plant Cell Rep 2007, 26:1899-1908. 10.1007/s00299-007-0389-5, 17593367.
    • (2007) Plant Cell Rep , vol.26 , pp. 1899-1908
    • Tsai, T.M.1    Chen, Y.R.2    Kao, T.W.3    Tsay, W.S.4    Wu, C.P.5    Huang, D.D.6    Chen, W.H.7    Chang, C.C.8    Huang, H.J.9
  • 64
    • 0037329951 scopus 로고    scopus 로고
    • CIPK3, a calcium sensor-associated protein kinase that regulates abscisic acid and cold signal transduction in Arabidopsis
    • 10.1105/tpc.006858, 141210, 12566581
    • Kim KN, Cheong YH, Grant JJ, Pandey GK, Luan S. CIPK3, a calcium sensor-associated protein kinase that regulates abscisic acid and cold signal transduction in Arabidopsis. Plant Cell 2003, 15:411-423. 10.1105/tpc.006858, 141210, 12566581.
    • (2003) Plant Cell , vol.15 , pp. 411-423
    • Kim, K.N.1    Cheong, Y.H.2    Grant, J.J.3    Pandey, G.K.4    Luan, S.5
  • 65
    • 79955989970 scopus 로고    scopus 로고
    • CIPK7 is involved in cold response by interacting with CBL1 in Arabidopsis thaliana
    • 10.1016/j.plantsci.2011.03.011, 21600398
    • Huang C, Ding S, Zhang H, Du H, An L. CIPK7 is involved in cold response by interacting with CBL1 in Arabidopsis thaliana. Plant Sci 2011, 181:57-64. 10.1016/j.plantsci.2011.03.011, 21600398.
    • (2011) Plant Sci , vol.181 , pp. 57-64
    • Huang, C.1    Ding, S.2    Zhang, H.3    Du, H.4    An, L.5
  • 66
    • 33744482285 scopus 로고    scopus 로고
    • The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1
    • 10.1073/pnas.0602874103, 1472463, 16702557
    • Dong CH, Agarwal M, Zhang Y, Xie Q, Zhu JK. The negative regulator of plant cold responses, HOS1, is a RING E3 ligase that mediates the ubiquitination and degradation of ICE1. Proc Natl Acad Sci U S A 2006, 103:8281-8286. 10.1073/pnas.0602874103, 1472463, 16702557.
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 8281-8286
    • Dong, C.H.1    Agarwal, M.2    Zhang, Y.3    Xie, Q.4    Zhu, J.K.5
  • 67
    • 0038650889 scopus 로고    scopus 로고
    • Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity
    • 10.1073/pnas.1131995100, 164540, 12736379
    • Michael TP, Salome PA, McClung CR. Two Arabidopsis circadian oscillators can be distinguished by differential temperature sensitivity. Proc Natl Acad Sci U S A 2003, 100:6878-6883. 10.1073/pnas.1131995100, 164540, 12736379.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 6878-6883
    • Michael, T.P.1    Salome, P.A.2    McClung, C.R.3
  • 68
    • 70349852402 scopus 로고    scopus 로고
    • A role for circadian evening elements in cold-regulated gene expression in Arabidopsis
    • 10.1111/j.1365-313X.2009.03957.x, 19566593
    • Mikkelsen MD, Thomashow MF. A role for circadian evening elements in cold-regulated gene expression in Arabidopsis. Plant J 2009, 60:328-339. 10.1111/j.1365-313X.2009.03957.x, 19566593.
    • (2009) Plant J , vol.60 , pp. 328-339
    • Mikkelsen, M.D.1    Thomashow, M.F.2
  • 69
    • 18744413036 scopus 로고    scopus 로고
    • Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock
    • 10.1104/pp.104.058354, 1065397, 15728337
    • Fowler SG, Cook D, Thomashow MF. Low temperature induction of Arabidopsis CBF1, 2, and 3 is gated by the circadian clock. Plant Physiol 2005, 137:961-968. 10.1104/pp.104.058354, 1065397, 15728337.
    • (2005) Plant Physiol , vol.137 , pp. 961-968
    • Fowler, S.G.1    Cook, D.2    Thomashow, M.F.3
  • 70
    • 0344926150 scopus 로고
    • Changes in Fatty acids of alfalfa roots during cold hardening
    • 10.1104/pp.41.8.1280, 550518, 16656398
    • Gerloff ED, Richardson T, Stahmann MA. Changes in Fatty acids of alfalfa roots during cold hardening. Plant Physiol 1966, 41:1280-1284. 10.1104/pp.41.8.1280, 550518, 16656398.
    • (1966) Plant Physiol , vol.41 , pp. 1280-1284
    • Gerloff, E.D.1    Richardson, T.2    Stahmann, M.A.3
  • 71
    • 0027135290 scopus 로고
    • Plasma Membrane Lipids Associated with Genetic Variability in Freezing Tolerance and Cold Acclimation of Solanum Species
    • 159049, 12231980
    • Palta JP, Whitaker BD, Weiss LS. Plasma Membrane Lipids Associated with Genetic Variability in Freezing Tolerance and Cold Acclimation of Solanum Species. Plant Physiol 1993, 103:793-803. 159049, 12231980.
    • (1993) Plant Physiol , vol.103 , pp. 793-803
    • Palta, J.P.1    Whitaker, B.D.2    Weiss, L.S.3
  • 72
    • 0000958521 scopus 로고
    • The effect of temperature on the level and biosynthesis of unsaturated fatty acids in diacylglycerols of Brassica napus leaves
    • 10.1104/pp.87.4.904, 1054867, 16666243
    • Williams JP, Khan MU, Mitchell K, Johnson G. The effect of temperature on the level and biosynthesis of unsaturated fatty acids in diacylglycerols of Brassica napus leaves. Plant Physiol 1988, 87:904-910. 10.1104/pp.87.4.904, 1054867, 16666243.
    • (1988) Plant Physiol , vol.87 , pp. 904-910
    • Williams, J.P.1    Khan, M.U.2    Mitchell, K.3    Johnson, G.4
  • 73
    • 0028066651 scopus 로고
    • Genetic enhancement of cold tolerance by expression of a gene for chloroplast [omega]-3 fatty acid desaturase in transgenic tobacco
    • 159399, 12232227
    • Kodama H, Hamada T, Horiguchi G, Nishimura M, Iba K. Genetic enhancement of cold tolerance by expression of a gene for chloroplast [omega]-3 fatty acid desaturase in transgenic tobacco. Plant Physiol 1994, 105:601-605. 159399, 12232227.
    • (1994) Plant Physiol , vol.105 , pp. 601-605
    • Kodama, H.1    Hamada, T.2    Horiguchi, G.3    Nishimura, M.4    Iba, K.5
  • 74
    • 0001676540 scopus 로고    scopus 로고
    • Chilling sensitivity in plants and cyanobacteria: the crucial contribution of membrane lipids
    • 10.1146/annurev.arplant.47.1.541, 15012300
    • Nishida I, Murata N. Chilling sensitivity in plants and cyanobacteria: the crucial contribution of membrane lipids. Annu Rev Plant Physiol Plant Mol Biol 1996, 47:541-568. 10.1146/annurev.arplant.47.1.541, 15012300.
    • (1996) Annu Rev Plant Physiol Plant Mol Biol , vol.47 , pp. 541-568
    • Nishida, I.1    Murata, N.2
  • 75
    • 47849124055 scopus 로고    scopus 로고
    • Inhibition of glutathione synthesis decreases chilling tolerance in Chorispora bungeana callus
    • 10.1016/j.cryobiol.2008.04.001, 18486938
    • Wu J, Zhao Z, An L, Liu Y, Xu S, Gao D, Zhang Y. Inhibition of glutathione synthesis decreases chilling tolerance in Chorispora bungeana callus. Cryobiology 2008, 57:9-17. 10.1016/j.cryobiol.2008.04.001, 18486938.
    • (2008) Cryobiology , vol.57 , pp. 9-17
    • Wu, J.1    Zhao, Z.2    An, L.3    Liu, Y.4    Xu, S.5    Gao, D.6    Zhang, Y.7
  • 77
    • 46249106990 scopus 로고    scopus 로고
    • Mapping and quantifying mammalian transcriptomes by RNA-Seq
    • 10.1038/nmeth.1226, 18516045
    • Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5:621-628. 10.1038/nmeth.1226, 18516045.
    • (2008) Nat Methods , vol.5 , pp. 621-628
    • Mortazavi, A.1    Williams, B.A.2    McCue, K.3    Schaeffer, L.4    Wold, B.5
  • 78
    • 75249095274 scopus 로고    scopus 로고
    • DEGseq: an R package for identifying differentially expressed genes from RNA-seq data
    • 10.1093/bioinformatics/btp612, 19855105
    • Wang L, Feng Z, Wang X, Zhang X. DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics 2010, 26:136-138. 10.1093/bioinformatics/btp612, 19855105.
    • (2010) Bioinformatics , vol.26 , pp. 136-138
    • Wang, L.1    Feng, Z.2    Wang, X.3    Zhang, X.4
  • 79
    • 0001677717 scopus 로고
    • Controlling the false discovery rate: a practical and powerful approach to multiple testing
    • Benjamini Y, Hochberg Y. Controlling the false discovery rate: a practical and powerful approach to multiple testing. J R Stat Soc Ser B 1995, 57:289-300.
    • (1995) J R Stat Soc Ser B , vol.57 , pp. 289-300
    • Benjamini, Y.1    Hochberg, Y.2
  • 81
    • 34247200577 scopus 로고    scopus 로고
    • The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses
    • 10.1111/j.1365-313X.2007.03052.x, 17376166
    • Kilian J, Whitehead D, Horak J, Wanke D, Weinl S, Batistic O, D'Angelo C, Bornberg-Bauer E, Kudla J, Harter K. The AtGenExpress global stress expression data set: protocols, evaluation and model data analysis of UV-B light, drought and cold stress responses. Plant J 2007, 50:347-363. 10.1111/j.1365-313X.2007.03052.x, 17376166.
    • (2007) Plant J , vol.50 , pp. 347-363
    • Kilian, J.1    Whitehead, D.2    Horak, J.3    Wanke, D.4    Weinl, S.5    Batistic, O.6    D'Angelo, C.7    Bornberg-Bauer, E.8    Kudla, J.9    Harter, K.10
  • 82
    • 1342288026 scopus 로고    scopus 로고
    • Affy-analysis of Affymetrix GeneChip data at the probe level
    • 10.1093/bioinformatics/btg405, 14960456
    • Gautier L, Cope L, Bolstad BM, Irizarry RA. affy-analysis of Affymetrix GeneChip data at the probe level. Bioinformatics 2004, 20:307-315. 10.1093/bioinformatics/btg405, 14960456.
    • (2004) Bioinformatics , vol.20 , pp. 307-315
    • Gautier, L.1    Cope, L.2    Bolstad, B.M.3    Irizarry, R.A.4
  • 83
    • 24644503098 scopus 로고    scopus 로고
    • Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research
    • 10.1093/bioinformatics/bti610, 16081474
    • Conesa A, Gotz S, Garcia-Gomez JM, Terol J, Talon M, Robles M. Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 2005, 21:3674-3676. 10.1093/bioinformatics/bti610, 16081474.
    • (2005) Bioinformatics , vol.21 , pp. 3674-3676
    • Conesa, A.1    Gotz, S.2    Garcia-Gomez, J.M.3    Terol, J.4    Talon, M.5    Robles, M.6
  • 85
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 10.1101/gr.1239303, 403769, 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 86
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034, 126239, 12184808
    • Vandesompele J, De Preter K, Pattyn F, Poppe B, Van Roy N, De Paepe A, Speleman F. Accurate normalization of real-time quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol 2002, 3:RESEARCH0034. 126239, 12184808.
    • (2002) Genome Biol , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    De Paepe, A.6    Speleman, F.7
  • 87
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • 10.1104/pp.105.063743, 1203353, 16166256
    • Czechowski T, Stitt M, Altmann T, Udvardi MK, Scheible WR. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol 2005, 139:5-17. 10.1104/pp.105.063743, 1203353, 16166256.
    • (2005) Plant Physiol , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 88
    • 17344392308 scopus 로고    scopus 로고
    • A new mathematical model for relative quantification in real-time RT-PCR
    • 10.1093/nar/29.9.e45, 55695, 11328886
    • Pfaffl MW. A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 2001, 29:e45. 10.1093/nar/29.9.e45, 55695, 11328886.
    • (2001) Nucleic Acids Res , vol.29
    • Pfaffl, M.W.1


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