Tryptophan rotamer distribution revealed for the α-helix in tear lipocalin by site-directed tryptophan fluorescence

Journal of Physical Chemistry B

Volumn 116, Issue 45, 2012, Pages 13381-13388

  Gasymov, Oktay K ^a   Abduragimov, Adil R ^a   Glasgow, Ben J ^a  

^a JULES STEIN EYE INSTITUTE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ENVIRONMENTAL DIFFERENCE; FLUORESCENCE INTENSITY DECAYS; FLUORESCENCE LIFETIMES; HELICAL CONFORMATION; HELICAL SEGMENTS; HELICAL STRUCTURES; LABELING TECHNIQUES; MEMBRANE PROTEINS; PROTEIN STRUCTURES; ROTAMERS; SIDE-CHAINS; SITE-SPECIFIC; TEAR LIPOCALIN; TERTIARY INTERACTIONS; TRP-FLUORESCENCE; TRYPTOPHAN FLUORESCENCE;

AMINO ACIDS; BIOLOGICAL MEMBRANES; CONFORMATIONS; FLUORESCENCE; X RAY CRYSTALLOGRAPHY;

PROTEINS;

LIPOCALIN; TRYPTOPHAN;

ARTICLE; CHEMISTRY; FLUORESCENCE;

FLUORESCENCE; LIPOCALINS; TRYPTOPHAN;

EID: 84869161564     PISSN: 15206106     EISSN: 15205207     Source Type: Journal    
DOI: 10.1021/jp309318r     Document Type: Article

References (44)

1. Goetz, D. H.; Holmes, M. A.; Borregaard, N.; Bluhm, M. E.; Raymond, K. N.; Strong, R. K. Mol. Cell 2002, 10, 1033-1043
2. Correnti, C.; Clifton, M. C.; Abergel, R. J.; Allred, B.; Hoette, T. M.; Ruiz, M.; Cancedda, R.; Raymond, K. N.; Descalzi, F.; Strong, R. K. Structure 2011, 19, 1796-1806
3. Gasymov, O. K.; Abduragimov, A. R.; Glasgow, B. J. Biochemistry 2012, 51, 2991-3002
4. Lakowicz, J. R. Principles of Fluorescence Spectroscopy, 3rd ed.; Springer: New York, 2006.
5. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochemistry 2001, 40, 14754-14762
6. Pan, C. P.; Callis, P. R.; Barkley, M. D. J. Phys. Chem. B 2006, 110, 7009-7016
7. Vivian, J. T.; Callis, P. R. Biophys. J. 2001, 80, 2093-2109
8. Chen, Y.; Barkley, M. D. Biochemistry 1998, 37, 9976-9982
9. Chen, Y.; Liu, B.; Yu, H. T.; Barkley, M. D. J. Am. Chem. Soc. 1996, 118, 9271-9278
10. McMahon, L. P.; Yu, H.-T.; Vela, M. A.; Morales, G. A.; Shui, L.; Fronczek, F. R.; McLaughlin, M. L.; Barkley, M. D. J. Phys. Chem. B 1997, 101, 3269-3280
11. Adams, P. D.; Chen, Y.; Ma, K.; Zagorski, M. G.; Sonnichsen, F. D.; McLaughlin, M. L.; Barkley, M. D. J. Am. Chem. Soc. 2002, 124, 9278-9286
12. Pan, C. P.; Muino, P. L.; Barkley, M. D.; Callis, P. R. J. Phys. Chem. B 2011, 115, 3245-3253
13. Callis, P. R.; Petrenko, A.; Muino, P. L.; Tusell, R. J. Phys. Chem. B 2007, 111, 10335-10339
14. Vivian, J. T.; Callis, P. R. Biophys. J. 2001, 80, 2093-2109
15. Pan, C. P.; Barkley, M. D. Biophys. J. 2004, 86, 3828-3835
16. Liu, B.; Thalji, R. K.; Adams, P. D.; Fronczek, F. R.; McLaughlin, M. L.; Barkley, M. D. J. Am. Chem. Soc. 2002, 124, 13329-13338
17. Callis, P. R.; Liu, T. J. Phys. Chem. B 2004, 108, 4248-4259
18. Clayton, A. H. A.; Sawyer, W. H. Biophys. J. 1999, 76, 3235-3242
19. Gasymov, O. K.; Abduragimov, A. R.; Glasgow, B. J. Biochemistry 2010, 49, 582-590
20. Breustedt, D. A.; Chatwell, L.; Skerra, A. Acta Crystallogr. D: Biol. Crystallogr. 2009, 65, 1118-1125
21. Breustedt, D. A.; Korndorfer, I. P.; Redl, B.; Skerra, A. J. Biol. Chem. 2005, 280, 484-493
22. Flower, D. R. Biochem. J. 1996, 318 (Pt 1) 1-14
23. Glasgow, B. J.; Abduragimov, A. R.; Farahbakhsh, Z. T.; Faull, K. F.; Hubbell, W. L. Curr. Eye Res. 1995, 14, 363-372
24. Dean, A. W.; Glasgow, B. J. Invest. Ophthalmol. Vis. Sci. 2012, 53, 1773-1782
25. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochim. Biophys. Acta 1999, 1433, 307-320
26. Glasgow, B. J.; Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Altenbach, C.; Hubbell, W. L. Biochemistry 1999, 38, 13707-13716
27. Glasgow, B. J.; Gasymov, O. K.; Abduragimov, A. R.; Engle, J. J.; Casey, R. C. Invest. Ophthalmol. Vis. Sci. 2010, 51, 1981-1987
28. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochim. Biophys. Acta 1998, 1386, 145-156
29. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochemistry 2002, 41, 8837-8848
30. Glasgow, B. J.; Heinzmann, C.; Kojis, T.; Sparkes, R. S.; Mohandas, T.; Bateman, J. B. Curr. Eye Res. 1993, 12, 1019-1023
31. Redl, B.; Holzfeind, P.; Lottspeich, F. J. Biol. Chem. 1992, 267, 20282-20287
32. Glasgow, B. J. Graefes Arch. Clin. Exp. Ophthalmol. 1995, 233, 513-522
33. Cormack, B. In Current Protocol in Molecular Biology; Greene Pub. Associates and Wiley-Interscience: New York, 1987; Suppl. 15.
34. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochemistry 2004, 43, 12894-12904
35. Lehrer, S. S. Biochemistry 1971, 10, 3254-3263
36. Kuppens, S.; Hellings, M.; Jordens, J.; Verheyden, S.; Engelborghs, Y. Protein Sci. 2003, 12, 930-938
37. Donzel, B.; Gauduchon, P.; Wahl, P. J. Am. Chem. Soc. 1974, 96, 801-808
38. Lovell, S. C.; Word, J. M.; Richardson, J. S.; Richardson, D. C. Proteins 2000, 40, 389-408
39. Shapovalov, M. V.; Dunbrack, R. L. Structure 2011, 19, 844-858
40. Scouras, A. D.; Daggett, V. Protein Sci. 2011, 20, 341-352
41. McHaourab, H. S.; Lietzow, M. A.; Hideg, K.; Hubbell, W. L. Biochemistry 1996, 35, 7692-7704
42. Gasymov, O. K.; Abduragimov, A. R.; Yusifov, T. N.; Glasgow, B. J. Biochem. Biophys. Res. Commun. 1997, 239, 191-196
43. Marsico, A.; Henschel, A.; Winter, C.; Tuukkanen, A.; Vassilev, B.; Scheubert, K.; Schroeder, M. BMC Bioinf. 2010, 11, 204
44. Bowie, J. U. Nature 2005, 438, 581-589