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Volumn 178, Issue 4, 2010, Pages 359-365

Reference gene selection for qPCR analysis during somatic embryogenesis in longan tree

Author keywords

Longan somatic embryogenesis; Normalization; qPCR; Reference genes

Indexed keywords

DIMOCARPUS LONGAN;

EID: 77649341683     PISSN: 01689452     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.plantsci.2010.02.005     Document Type: Article
Times cited : (185)

References (48)
  • 1
    • 0027140373 scopus 로고
    • Somatic embryogenesis: a model for early development in higher plants
    • Zimmerman J.L. Somatic embryogenesis: a model for early development in higher plants. Plant Cell 5 (1993) 1411-1423
    • (1993) Plant Cell , vol.5 , pp. 1411-1423
    • Zimmerman, J.L.1
  • 3
    • 77649339347 scopus 로고    scopus 로고
    • The gene regulating network for somatic embryogenesis in plants
    • Lin Y.L., and Lai Z.X. The gene regulating network for somatic embryogenesis in plants. J. Agric. Biotechnol. 15 Suppl. (2007) 1-11
    • (2007) J. Agric. Biotechnol. , vol.15 , Issue.SUPPL , pp. 1-11
    • Lin, Y.L.1    Lai, Z.X.2
  • 4
    • 35548934698 scopus 로고    scopus 로고
    • A draft gene regulatory network for cellular totipotency reprogramming during plant somatic embryogenesis
    • Zeng F.C., Zhang X.L., Cheng L., Hu L.S., Zhu L.F., Cao J.L., and Guo X.P. A draft gene regulatory network for cellular totipotency reprogramming during plant somatic embryogenesis. Genomics 90 (2007) 620-628
    • (2007) Genomics , vol.90 , pp. 620-628
    • Zeng, F.C.1    Zhang, X.L.2    Cheng, L.3    Hu, L.S.4    Zhu, L.F.5    Cao, J.L.6    Guo, X.P.7
  • 5
    • 0036668567 scopus 로고    scopus 로고
    • Quantification of mRNA using real-time reverse transcription PCR RT-PCR: trends and problems
    • Bustin S.A. Quantification of mRNA using real-time reverse transcription PCR RT-PCR: trends and problems. J. Mol. Endocrinol. 29 (2002) 23-29
    • (2002) J. Mol. Endocrinol. , vol.29 , pp. 23-29
    • Bustin, S.A.1
  • 6
    • 3242732345 scopus 로고    scopus 로고
    • Real-time PCR: what relevance to plant studies?
    • Gachon C., Mingam A., and Charrier B. Real-time PCR: what relevance to plant studies?. J. Exp. Bot. 55 (2004) 1445-1454
    • (2004) J. Exp. Bot. , vol.55 , pp. 1445-1454
    • Gachon, C.1    Mingam, A.2    Charrier, B.3
  • 7
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • Jain M., Nijhawan A., Tyagi A.K., and Khurana J.P. Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem. Biophys. Res. Commun. 345 (2006) 646-651
    • (2006) Biochem. Biophys. Res. Commun. , vol.345 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4
  • 8
    • 0037129827 scopus 로고    scopus 로고
    • Accurate normalisation of realtime quantitative RT-PCR data by geometric averaging of multiple internal control genes
    • RESEARCH0034.1-0034.11
    • Vandesompele J., De Preter K., Pattyn F., Poppe B., Van Roy N., DePaepe A., and Speleman F. Accurate normalisation of realtime quantitative RT-PCR data by geometric averaging of multiple internal control genes. Genome Biol. 3 (2002) RESEARCH0034.1-0034.11
    • (2002) Genome Biol. , vol.3
    • Vandesompele, J.1    De Preter, K.2    Pattyn, F.3    Poppe, B.4    Van Roy, N.5    DePaepe, A.6    Speleman, F.7
  • 9
    • 85082787048 scopus 로고    scopus 로고
    • Selection of housekeeping genes for normalization by real-time RT-PCR: analysis of Or-MYB1 gene expression in Orobanche ramosa development
    • González-Verdejoa C.I., Diea J.V., Nadala S., Jiménez-Marínb A., Morenoa M.T., and Román B. Selection of housekeeping genes for normalization by real-time RT-PCR: analysis of Or-MYB1 gene expression in Orobanche ramosa development. Anal. Biochem. 379 (2008) 38-43
    • (2008) Anal. Biochem. , vol.379 , pp. 38-43
    • González-Verdejoa, C.I.1    Diea, J.V.2    Nadala, S.3    Jiménez-Marínb, A.4    Morenoa, M.T.5    Román, B.6
  • 10
    • 41549134734 scopus 로고    scopus 로고
    • Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development
    • Jorge M.F., Maren M., Ørjan H., Igor B., and Christel S. Selection of suitable reference genes for real-time PCR studies of Atlantic halibut development. Comp. Biochem. Physiol. B 150 (2008) 23-32
    • (2008) Comp. Biochem. Physiol. B , vol.150 , pp. 23-32
    • Jorge, M.F.1    Maren, M.2    Ørjan, H.3    Igor, B.4    Christel, S.5
  • 11
    • 57749111976 scopus 로고    scopus 로고
    • Eleven golden rules of quantitative RT-PCR
    • Udvardi M.K., Czechowski T., and Scheible W.D. Eleven golden rules of quantitative RT-PCR. Plant Cell 20 (2008) 1736-1737
    • (2008) Plant Cell , vol.20 , pp. 1736-1737
    • Udvardi, M.K.1    Czechowski, T.2    Scheible, W.D.3
  • 15
    • 0036178995 scopus 로고    scopus 로고
    • Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies
    • Lee P.D., Sladek R., Greenwood C.M., and Hudson T.J. Control genes and variability: absence of ubiquitous reference transcripts in diverse mammalian expression studies. Genome Res. 12 (2002) 292-297
    • (2002) Genome Res. , vol.12 , pp. 292-297
    • Lee, P.D.1    Sladek, R.2    Greenwood, C.M.3    Hudson, T.J.4
  • 16
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis
    • Czechowski T., Stitt M., Altmann T., Udvardi M.K., and Scheible W.R. Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139 (2005) 5-17
    • (2005) Plant Physiol. , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 17
    • 0344531001 scopus 로고    scopus 로고
    • Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice
    • Kim B.R., Nam H.Y., Kim S.U., Kim S.I., and Chang Y.J. Normalization of reverse transcription quantitative-PCR with housekeeping genes in rice. Biotechnol. Lett. 25 (2003) 1869-1872
    • (2003) Biotechnol. Lett. , vol.25 , pp. 1869-1872
    • Kim, B.R.1    Nam, H.Y.2    Kim, S.U.3    Kim, S.I.4    Chang, Y.J.5
  • 18
    • 5444258598 scopus 로고    scopus 로고
    • Validating internal controls for quantitative plant gene expression studies
    • Brunner A.M., Yakovlev I.A., and Strauss S.H. Validating internal controls for quantitative plant gene expression studies. BMC Plant Biol. 4 (2004) 14-20
    • (2004) BMC Plant Biol. , vol.4 , pp. 14-20
    • Brunner, A.M.1    Yakovlev, I.A.2    Strauss, S.H.3
  • 19
    • 18944381809 scopus 로고    scopus 로고
    • Comparison of reference genes for quantitative real-time polymerase chain reaction analysis of gene expression in sugarcane
    • Iskandar H., Simpson R.S., Casu R.E., Bonnett G.D., Maclean D.J., and Manners J.M. Comparison of reference genes for quantitative real-time polymerase chain reaction analysis of gene expression in sugarcane. Plant Mol. Biol. Reporter 22 (2004) 325-337
    • (2004) Plant Mol. Biol. Reporter , vol.22 , pp. 325-337
    • Iskandar, H.1    Simpson, R.S.2    Casu, R.E.3    Bonnett, G.D.4    Maclean, D.J.5    Manners, J.M.6
  • 20
    • 32644481938 scopus 로고    scopus 로고
    • Genome-wide identification and testing of superior. Reference genes for transcript normalization in Arabidopsis
    • Czechowski T., Stitt M., Altmann T., Udvardi M.K., and Scheible W.R. Genome-wide identification and testing of superior. Reference genes for transcript normalization in Arabidopsis. Plant Physiol. 139 (2005) 5-17
    • (2005) Plant Physiol. , vol.139 , pp. 5-17
    • Czechowski, T.1    Stitt, M.2    Altmann, T.3    Udvardi, M.K.4    Scheible, W.R.5
  • 21
    • 27144456802 scopus 로고    scopus 로고
    • Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress
    • Nicot N., Hausman J.F., Hoffmann L., and Evers D. Housekeeping gene selection for real-time RT-PCR normalization in potato during biotic and abiotic stress. J. Exp. Bot. 56 (2005) 2907-2914
    • (2005) J. Exp. Bot. , vol.56 , pp. 2907-2914
    • Nicot, N.1    Hausman, J.F.2    Hoffmann, L.3    Evers, D.4
  • 22
    • 26644438574 scopus 로고    scopus 로고
    • Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis
    • Goncalves S., Cairney J., Maroco J., Oliveira M.M., and Miguel C. Evaluation of control transcripts in real-time RT-PCR expression analysis during maritime pine embryogenesis. Planta 222 (2005) 556-563
    • (2005) Planta , vol.222 , pp. 556-563
    • Goncalves, S.1    Cairney, J.2    Maroco, J.3    Oliveira, M.M.4    Miguel, C.5
  • 23
    • 29544446926 scopus 로고    scopus 로고
    • Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa)
    • Jain M., Kaur N., Garg R., Thakur J.K., Tyagi A.K., and Khurana J.P. Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Funct. Integr. Genom. 6 (2006) 47-59
    • (2006) Funct. Integr. Genom. , vol.6 , pp. 47-59
    • Jain, M.1    Kaur, N.2    Garg, R.3    Thakur, J.K.4    Tyagi, A.K.5    Khurana, J.P.6
  • 24
    • 36448987912 scopus 로고    scopus 로고
    • Suitable internal control genes for qRT-PCR normalization in cotton fiber development and somatic embryogenesis
    • Tu L.L., Zhang X.L., Liu D.Q., Jin S.X., Cao J.L., Zhu L.F., Deng F.L., Tan J.F., and Zhang C.B. Suitable internal control genes for qRT-PCR normalization in cotton fiber development and somatic embryogenesis. Chin. Sci. Bull. 52 (2007) 2379-2385
    • (2007) Chin. Sci. Bull. , vol.52 , pp. 2379-2385
    • Tu, L.L.1    Zhang, X.L.2    Liu, D.Q.3    Jin, S.X.4    Cao, J.L.5    Zhu, L.F.6    Deng, F.L.7    Tan, J.F.8    Zhang, C.B.9
  • 25
    • 61849089336 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress
    • Løvdal T., and Lillo C. Reference gene selection for quantitative real-time PCR normalization in tomato subjected to nitrogen, cold, and light stress. Anal. Biochem. 387 (2009) 238-242
    • (2009) Anal. Biochem. , vol.387 , pp. 238-242
    • Løvdal, T.1    Lillo, C.2
  • 26
    • 58849120561 scopus 로고    scopus 로고
    • Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions
    • Barsalobres-Cavallari C.F., Severino F.E., Maluf M.P., and Maia I.G. Identification of suitable internal control genes for expression studies in Coffea arabica under different experimental conditions. BMC Mol. Biol. 10 (2009) 1
    • (2009) BMC Mol. Biol. , vol.10 , pp. 1
    • Barsalobres-Cavallari, C.F.1    Severino, F.E.2    Maluf, M.P.3    Maia, I.G.4
  • 27
    • 64549093259 scopus 로고    scopus 로고
    • Identification and validation of reference genes for quantitative RT-PCR normalization in wheat
    • Paolacci A.R., Tanzarella O.A., Porceddu E., and Ciaffi M. Identification and validation of reference genes for quantitative RT-PCR normalization in wheat. BMC Mol. Biol. 10 (2009) 1-27
    • (2009) BMC Mol. Biol. , vol.10 , pp. 1-27
    • Paolacci, A.R.1    Tanzarella, O.A.2    Porceddu, E.3    Ciaffi, M.4
  • 28
    • 68949217794 scopus 로고    scopus 로고
    • Selection of reliable reference genes for gene expression studies in peach using real-time PCR
    • Tong Z.G., Gao Z.H., Wang F., Zhou J., and Zhang Z. Selection of reliable reference genes for gene expression studies in peach using real-time PCR. BMC Mol. Biol. 10 (2009) 71
    • (2009) BMC Mol. Biol. , vol.10 , pp. 71
    • Tong, Z.G.1    Gao, Z.H.2    Wang, F.3    Zhou, J.4    Zhang, Z.5
  • 29
    • 16244374481 scopus 로고    scopus 로고
    • Establishment and maintenance of longan embryogenic cell lines
    • Lai Z.X., Pan L.Z., and Chen Z.G. Establishment and maintenance of longan embryogenic cell lines. J. Fujian Agric. Univ. 26 (1997) 160-167
    • (1997) J. Fujian Agric. Univ. , vol.26 , pp. 160-167
    • Lai, Z.X.1    Pan, L.Z.2    Chen, Z.G.3
  • 30
    • 77649340673 scopus 로고    scopus 로고
    • Somatic embryogenesis of high frequency from longan embryogenic calli
    • Lai Z.X., and Chen Z.G. Somatic embryogenesis of high frequency from longan embryogenic calli. J. Fujian Agric. Univ. 26 (1997) 271-276
    • (1997) J. Fujian Agric. Univ. , vol.26 , pp. 271-276
    • Lai, Z.X.1    Chen, Z.G.2
  • 31
    • 16244387043 scopus 로고    scopus 로고
    • PIant regeneration at high frequency from somatic embryos in Iongan
    • Lai Z.X., Pan L.Z., and Chen Z.G. PIant regeneration at high frequency from somatic embryos in Iongan. J. Fujian Agric. Univ. 27 (1998) 31-36
    • (1998) J. Fujian Agric. Univ. , vol.27 , pp. 31-36
    • Lai, Z.X.1    Pan, L.Z.2    Chen, Z.G.3
  • 33
    • 16244379062 scopus 로고    scopus 로고
    • Somatic embryogenesis in longan (Dimocarpus longan Lour.)
    • Jain S.M., Gupta P.K., and Newton R.J. (Eds), Kluwer Academic Publishers, Dordrect/Boston/London
    • Lai Z.X., Chen C.L., Zeng L.H., et al. Somatic embryogenesis in longan (Dimocarpus longan Lour.). In: Jain S.M., Gupta P.K., and Newton R.J. (Eds). Somatic Embryogenesis in Woody Plants vol. 6 (2000), Kluwer Academic Publishers, Dordrect/Boston/London 415-431
    • (2000) Somatic Embryogenesis in Woody Plants , vol.6 , pp. 415-431
    • Lai, Z.X.1    Chen, C.L.2    Zeng, L.H.3
  • 35
    • 3442876969 scopus 로고    scopus 로고
    • Normalisation of real-time quantitative reverse transcription-PCR data: a model based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Andersen C.L., Jensen J.L., and Ørntoft T.F. Normalisation of real-time quantitative reverse transcription-PCR data: a model based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res. 64 (2004) 5245-5250
    • (2004) Cancer Res. , vol.64 , pp. 5245-5250
    • Andersen, C.L.1    Jensen, J.L.2    Ørntoft, T.F.3
  • 36
    • 1842483281 scopus 로고    scopus 로고
    • Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations
    • Pfaffl M.W., Tichopad A., Prgomet C., and Neuvians T.P. Determination of stable housekeeping genes, differentially regulated target genes and sample integrity: BestKeeper-Excel-based tool using pair-wise correlations. Biotechnol. Lett. 26 (2004) 509-515
    • (2004) Biotechnol. Lett. , vol.26 , pp. 509-515
    • Pfaffl, M.W.1    Tichopad, A.2    Prgomet, C.3    Neuvians, T.P.4
  • 38
    • 33845439391 scopus 로고    scopus 로고
    • Validation of candidate bovine reference genes for use with real-time PCR
    • Robinson T.L., Sutherland I.A., and Sutherland J. Validation of candidate bovine reference genes for use with real-time PCR. Vet. Immunol. Immunopathol. 115 (2007) 160-165
    • (2007) Vet. Immunol. Immunopathol. , vol.115 , pp. 160-165
    • Robinson, T.L.1    Sutherland, I.A.2    Sutherland, J.3
  • 39
    • 44849085483 scopus 로고    scopus 로고
    • Exercise induced stress in horses: selection of the most stable reference genes for quantitative RT-PCR normalization
    • Cappelli K., Felicetti M., Capomaccio S., Spinsanti G., Silvestrelli M., and Supplizi A. Exercise induced stress in horses: selection of the most stable reference genes for quantitative RT-PCR normalization. BMC Mol. Biol. 9 (2008) 49
    • (2008) BMC Mol. Biol. , vol.9 , pp. 49
    • Cappelli, K.1    Felicetti, M.2    Capomaccio, S.3    Spinsanti, G.4    Silvestrelli, M.5    Supplizi, A.6
  • 40
    • 0032973950 scopus 로고    scopus 로고
    • New insights into an old protein: the functional diversity of mammalian glyceraldehydes-3-phosphate-dehydrogenase
    • Sirover M.A. New insights into an old protein: the functional diversity of mammalian glyceraldehydes-3-phosphate-dehydrogenase. Biochim. Biophys. Acta 1432 (1999) 159-184
    • (1999) Biochim. Biophys. Acta , vol.1432 , pp. 159-184
    • Sirover, M.A.1
  • 42
    • 0037109753 scopus 로고    scopus 로고
    • Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies
    • Tricarico C., Pinzani P., Bianchi S., Paglierani M., Distante V., Pazzagli M., Bustin S.A., and Orlando C. Quantitative real-time reverse transcription polymerase chain reaction: normalization to rRNA or single housekeeping genes is inappropriate for human tissue biopsies. Anal. Biochem. 309 (2002) 293-300
    • (2002) Anal. Biochem. , vol.309 , pp. 293-300
    • Tricarico, C.1    Pinzani, P.2    Bianchi, S.3    Paglierani, M.4    Distante, V.5    Pazzagli, M.6    Bustin, S.A.7    Orlando, C.8
  • 46
    • 0032885421 scopus 로고    scopus 로고
    • Actin-organelle interaction: association with chloroplast in Arabidopsis leaf mesophyll cells
    • Kandasamy M.K., and Meagher R.B. Actin-organelle interaction: association with chloroplast in Arabidopsis leaf mesophyll cells. Cell Motil. Cytoskel. 44 (1999) 110-118
    • (1999) Cell Motil. Cytoskel. , vol.44 , pp. 110-118
    • Kandasamy, M.K.1    Meagher, R.B.2
  • 47
    • 33751234803 scopus 로고    scopus 로고
    • An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development
    • Reid K.E., Olsson N., Schlosser J., Peng F., and Lund S.T. An optimized grapevine RNA isolation procedure and statistical determination of reference genes for real-time RT-PCR during berry development. BMC Plant Biol. 14 (2006) 27-37
    • (2006) BMC Plant Biol. , vol.14 , pp. 27-37
    • Reid, K.E.1    Olsson, N.2    Schlosser, J.3    Peng, F.4    Lund, S.T.5
  • 48
    • 15544374615 scopus 로고    scopus 로고
    • Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6 Camelpox virus and Cytomegalovirus infections
    • Radoni A., Thulke S., Bae H.G., Müller M., Siegert W., and Nitsche A. Reference gene selection for quantitative real-time PCR analysis in virus infected cells: SARS corona virus, Yellow fever virus, Human Herpesvirus-6 Camelpox virus and Cytomegalovirus infections. Virol. J. 2 (2005) 7
    • (2005) Virol. J. , vol.2 , pp. 7
    • Radoni, A.1    Thulke, S.2    Bae, H.G.3    Müller, M.4    Siegert, W.5    Nitsche, A.6


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