-
1
-
-
81355139585
-
Controlling gene expression in response to stress.
-
de Nadal E, Ammerer G, Posas F. Controlling gene expression in response to stress. Nat Rev Genet 2011, 12:833-845.
-
(2011)
Nat Rev Genet
, vol.12
, pp. 833-845
-
-
de Nadal, E.1
Ammerer, G.2
Posas, F.3
-
2
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes.
-
15070, 11102521
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000, 11:4241-4257. 15070, 11102521.
-
(2000)
Mol Biol Cell
, vol.11
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
3
-
-
0034625364
-
The transcriptional response of yeast to saline stress.
-
10.1074/jbc.M910016199, 10748181
-
Posas F, Chambers JR, Heyman JA, Hoeffler JP, de Nadal E, Arino J. The transcriptional response of yeast to saline stress. J Biol Chem 2000, 275:17249-17255. 10.1074/jbc.M910016199, 10748181.
-
(2000)
J Biol Chem
, vol.275
, pp. 17249-17255
-
-
Posas, F.1
Chambers, J.R.2
Heyman, J.A.3
Hoeffler, J.P.4
de Nadal, E.5
Arino, J.6
-
4
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes.
-
30946, 11179418
-
Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA. Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 2001, 12:323-337. 30946, 11179418.
-
(2001)
Mol Biol Cell
, vol.12
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
5
-
-
84984933073
-
Structure and function of a transcriptional network activated by the MAPK Hog1.
-
10.1038/ng.235, 2825711, 18931682
-
Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 2008, 40:1300-1306. 10.1038/ng.235, 2825711, 18931682.
-
(2008)
Nat Genet
, vol.40
, pp. 1300-1306
-
-
Capaldi, A.P.1
Kaplan, T.2
Liu, Y.3
Habib, N.4
Regev, A.5
Friedman, N.6
O'Shea, E.K.7
-
6
-
-
62549149882
-
MRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress.
-
10.1261/rna.1403509, 2661839, 19223440
-
Molin C, Jauhiainen A, Warringer J, Nerman O, Sunnerhagen P. mRNA stability changes precede changes in steady-state mRNA amounts during hyperosmotic stress. RNA 2009, 15:600-614. 10.1261/rna.1403509, 2661839, 19223440.
-
(2009)
RNA
, vol.15
, pp. 600-614
-
-
Molin, C.1
Jauhiainen, A.2
Warringer, J.3
Nerman, O.4
Sunnerhagen, P.5
-
7
-
-
66149163332
-
Dynamic and complex transcription factor binding during an inducible response in yeast.
-
10.1101/gad.1781909, 2701586, 19487574
-
Ni L, Bruce C, Hart C, Leigh-Bell J, Gelperin D, Umansky L, Gerstein MB, Snyder M. Dynamic and complex transcription factor binding during an inducible response in yeast. Genes Dev 2009, 23:1351-1363. 10.1101/gad.1781909, 2701586, 19487574.
-
(2009)
Genes Dev
, vol.23
, pp. 1351-1363
-
-
Ni, L.1
Bruce, C.2
Hart, C.3
Leigh-Bell, J.4
Gelperin, D.5
Umansky, L.6
Gerstein, M.B.7
Snyder, M.8
-
8
-
-
66449128185
-
Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae.
-
10.1261/rna.1435709, 2685517, 19369426
-
Romero-Santacreu L, Moreno J, Perez-Ortin JE, Alepuz P. Specific and global regulation of mRNA stability during osmotic stress in Saccharomyces cerevisiae. RNA 2009, 15:1110-1120. 10.1261/rna.1435709, 2685517, 19369426.
-
(2009)
RNA
, vol.15
, pp. 1110-1120
-
-
Romero-Santacreu, L.1
Moreno, J.2
Perez-Ortin, J.E.3
Alepuz, P.4
-
9
-
-
78650930357
-
Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast.
-
3049410, 21206491
-
Miller C, Schwalb B, Maier K, Schulz D, Dümcke S, Zacher B, Mayer A, Sydow J, Marcinowski L, Dölken L, Martin DE, Tresch A, Cramer P. Dynamic transcriptome analysis measures rates of mRNA synthesis and decay in yeast. Mol Syst Biol 2011, 7:458. 3049410, 21206491.
-
(2011)
Mol Syst Biol
, vol.7
, pp. 458
-
-
Miller, C.1
Schwalb, B.2
Maier, K.3
Schulz, D.4
Dümcke, S.5
Zacher, B.6
Mayer, A.7
Sydow, J.8
Marcinowski, L.9
Dölken, L.10
Martin, D.E.11
Tresch, A.12
Cramer, P.13
-
10
-
-
0035012401
-
Stress-induced map kinase Hog1 is part of transcription activation complexes.
-
10.1016/S1097-2765(01)00221-0, 11336700
-
Alepuz PM, Jovanovic A, Reiser V, Ammerer G. Stress-induced map kinase Hog1 is part of transcription activation complexes. Mol Cell 2001, 7:767-777. 10.1016/S1097-2765(01)00221-0, 11336700.
-
(2001)
Mol Cell
, vol.7
, pp. 767-777
-
-
Alepuz, P.M.1
Jovanovic, A.2
Reiser, V.3
Ammerer, G.4
-
11
-
-
0035282906
-
Regulation of the Sko1 transcriptional repressor by the Hog1 MAP kinase in response to osmotic stress.
-
10.1093/emboj/20.5.1123, 145460, 11230135
-
Proft M, Pascual-Ahuir A, de Nadal E, Arino J, Serrano R, Posas F. Regulation of the Sko1 transcriptional repressor by the Hog1 MAP kinase in response to osmotic stress. EMBO J 2001, 20:1123-1133. 10.1093/emboj/20.5.1123, 145460, 11230135.
-
(2001)
EMBO J
, vol.20
, pp. 1123-1133
-
-
Proft, M.1
Pascual-Ahuir, A.2
de Nadal, E.3
Arino, J.4
Serrano, R.5
Posas, F.6
-
12
-
-
0036289351
-
Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress.
-
10.1016/S1097-2765(02)00557-9, 12086627
-
Proft M, Struhl K. Hog1 kinase converts the Sko1-Cyc8-Tup1 repressor complex into an activator that recruits SAGA and SWI/SNF in response to osmotic stress. Mol Cell 2002, 9:1307-1317. 10.1016/S1097-2765(02)00557-9, 12086627.
-
(2002)
Mol Cell
, vol.9
, pp. 1307-1317
-
-
Proft, M.1
Struhl, K.2
-
13
-
-
0038242285
-
Osmostress-induced transcription by Hot1 depends on a Hog1-mediated recruitment of the RNA Pol II.
-
10.1093/emboj/cdg243, 156001, 12743037
-
Alepuz PM, de Nadal E, Zapater M, Ammerer G, Posas F. Osmostress-induced transcription by Hot1 depends on a Hog1-mediated recruitment of the RNA Pol II. EMBO J 2003, 22:2433-2442. 10.1093/emboj/cdg243, 156001, 12743037.
-
(2003)
EMBO J
, vol.22
, pp. 2433-2442
-
-
Alepuz, P.M.1
de Nadal, E.2
Zapater, M.3
Ammerer, G.4
Posas, F.5
-
14
-
-
0037214352
-
Targeting the MEF2-like transcription factor Smp1 by the stress-activated Hog1 mitogen-activated protein kinase.
-
10.1128/MCB.23.1.229-237.2003, 140668, 12482976
-
de Nadal E, Casadome L, Posas F. Targeting the MEF2-like transcription factor Smp1 by the stress-activated Hog1 mitogen-activated protein kinase. Mol Cell Biol 2003, 23:229-237. 10.1128/MCB.23.1.229-237.2003, 140668, 12482976.
-
(2003)
Mol Cell Biol
, vol.23
, pp. 229-237
-
-
de Nadal, E.1
Casadome, L.2
Posas, F.3
-
15
-
-
33750351874
-
Genome-wide location analysis of the stress-activated MAP kinase Hog1 in yeast.
-
10.1016/j.ymeth.2006.06.007, 16884916
-
Pascual-Ahuir A, Struhl K, Proft M. Genome-wide location analysis of the stress-activated MAP kinase Hog1 in yeast. Methods 2006, 40:272-278. 10.1016/j.ymeth.2006.06.007, 16884916.
-
(2006)
Methods
, vol.40
, pp. 272-278
-
-
Pascual-Ahuir, A.1
Struhl, K.2
Proft, M.3
-
16
-
-
33746611519
-
Activated signal transduction kinases frequently occupy target genes.
-
10.1126/science.1127677, 16873666
-
Pokholok DK, Zeitlinger J, Hannett NM, Reynolds DB, Young RA. Activated signal transduction kinases frequently occupy target genes. Science 2006, 313:533-536. 10.1126/science.1127677, 16873666.
-
(2006)
Science
, vol.313
, pp. 533-536
-
-
Pokholok, D.K.1
Zeitlinger, J.2
Hannett, N.M.3
Reynolds, D.B.4
Young, R.A.5
-
17
-
-
33745959274
-
The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress.
-
10.1016/j.molcel.2006.05.031, 16857590
-
Proft M, Mas G, de Nadal E, Vendrell A, Noriega N, Struhl K, Posas F. The stress-activated Hog1 kinase is a selective transcriptional elongation factor for genes responding to osmotic stress. Mol Cell 2006, 23:241-250. 10.1016/j.molcel.2006.05.031, 16857590.
-
(2006)
Mol Cell
, vol.23
, pp. 241-250
-
-
Proft, M.1
Mas, G.2
de Nadal, E.3
Vendrell, A.4
Noriega, N.5
Struhl, K.6
Posas, F.7
-
18
-
-
1642580754
-
The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes.
-
10.1038/nature02258, 14737171
-
de Nadal E, Zapater M, Alepuz PM, Sumoy L, Mas G, Posas F. The MAPK Hog1 recruits Rpd3 histone deacetylase to activate osmoresponsive genes. Nature 2004, 427:370-374. 10.1038/nature02258, 14737171.
-
(2004)
Nature
, vol.427
, pp. 370-374
-
-
de Nadal, E.1
Zapater, M.2
Alepuz, P.M.3
Sumoy, L.4
Mas, G.5
Posas, F.6
-
19
-
-
34347348213
-
Selective requirement for SAGA in Hog1-mediated gene expression depending on the severity of the external osmostress conditions.
-
10.1128/MCB.00089-07, 1900016, 17403898
-
Zapater M, Sohrmann M, Peter M, Posas F, de Nadal E. Selective requirement for SAGA in Hog1-mediated gene expression depending on the severity of the external osmostress conditions. Mol Cell Biol 2007, 27:3900-3910. 10.1128/MCB.00089-07, 1900016, 17403898.
-
(2007)
Mol Cell Biol
, vol.27
, pp. 3900-3910
-
-
Zapater, M.1
Sohrmann, M.2
Peter, M.3
Posas, F.4
de Nadal, E.5
-
20
-
-
80155192462
-
Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress.
-
10.1038/emboj.2011.227, 3160652, 21743437
-
Sole C, Nadal-Ribelles M, Kraft C, Peter M, Posas F, de Nadal E. Control of Ubp3 ubiquitin protease activity by the Hog1 SAPK modulates transcription upon osmostress. EMBO J 2011, 30:3274-3284. 10.1038/emboj.2011.227, 3160652, 21743437.
-
(2011)
EMBO J
, vol.30
, pp. 3274-3284
-
-
Sole, C.1
Nadal-Ribelles, M.2
Kraft, C.3
Peter, M.4
Posas, F.5
de Nadal, E.6
-
21
-
-
60549106999
-
Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes.
-
10.1038/emboj.2008.299, 2632941, 19153600
-
Mas G, de Nadal E, Dechant R, Rodríguez de la Concepción ML, Logie C, Jimeno-González S, Chávez S, Ammerer G, Posas F. Recruitment of a chromatin remodelling complex by the Hog1 MAP kinase to stress genes. EMBO J 2009, 28:326-336. 10.1038/emboj.2008.299, 2632941, 19153600.
-
(2009)
EMBO J
, vol.28
, pp. 326-336
-
-
Mas, G.1
de Nadal, E.2
Dechant, R.3
Rodríguez de la Concepción, M.L.4
Logie, C.5
Jimeno-González, S.6
Chávez, S.7
Ammerer, G.8
Posas, F.9
-
22
-
-
4043098376
-
MAP kinase-mediated stress relief that precedes and regulates the timing of transcriptional induction.
-
10.1016/j.cell.2004.07.016, 15294160
-
Proft M, Struhl K. MAP kinase-mediated stress relief that precedes and regulates the timing of transcriptional induction. Cell 2004, 118:351-361. 10.1016/j.cell.2004.07.016, 15294160.
-
(2004)
Cell
, vol.118
, pp. 351-361
-
-
Proft, M.1
Struhl, K.2
-
23
-
-
79955753549
-
Transient activation of the HOG MAPK pathway regulates bimodal gene expression.
-
10.1126/science.1198851, 21551064
-
Pelet S, Rudolf F, Nadal-Ribelles M, de Nadal E, Posas F, Peter M. Transient activation of the HOG MAPK pathway regulates bimodal gene expression. Science 2011, 332:732-735. 10.1126/science.1198851, 21551064.
-
(2011)
Science
, vol.332
, pp. 732-735
-
-
Pelet, S.1
Rudolf, F.2
Nadal-Ribelles, M.3
de Nadal, E.4
Posas, F.5
Peter, M.6
-
24
-
-
0033542436
-
Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme.
-
10.1038/21239, 10376605
-
Kuras L, Struhl K. Binding of TBP to promoters in vivo is stimulated by activators and requires Pol II holoenzyme. Nature 1999, 399:609-613. 10.1038/21239, 10376605.
-
(1999)
Nature
, vol.399
, pp. 609-613
-
-
Kuras, L.1
Struhl, K.2
-
25
-
-
83255194564
-
Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data.
-
10.1093/bioinformatics/btr570, 3232367, 21994224
-
Althammer S, Gonzalez-Vallinas J, Ballare C, Beato M, Eyras E. Pyicos: a versatile toolkit for the analysis of high-throughput sequencing data. Bioinformatics 2011, 27:3333-3340. 10.1093/bioinformatics/btr570, 3232367, 21994224.
-
(2011)
Bioinformatics
, vol.27
, pp. 3333-3340
-
-
Althammer, S.1
Gonzalez-Vallinas, J.2
Ballare, C.3
Beato, M.4
Eyras, E.5
-
26
-
-
62349130698
-
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome.
-
10.1186/gb-2009-10-3-r25, 2690996, 19261174
-
Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol 2009, 10:R25. 10.1186/gb-2009-10-3-r25, 2690996, 19261174.
-
(2009)
Genome Biol
, vol.10
-
-
Langmead, B.1
Trapnell, C.2
Pop, M.3
Salzberg, S.L.4
-
27
-
-
79960434317
-
NucleR: a package for non-parametric nucleosome positioning.
-
10.1093/bioinformatics/btr345, 21653521
-
Flores O, Orozco M. nucleR: a package for non-parametric nucleosome positioning. Bioinformatics 2011, 27:2149-2150. 10.1093/bioinformatics/btr345, 21653521.
-
(2011)
Bioinformatics
, vol.27
, pp. 2149-2150
-
-
Flores, O.1
Orozco, M.2
-
28
-
-
77952119807
-
The Rpd3L HDAC complex is essential for the heat stress response in yeast.
-
10.1111/j.1365-2958.2010.07167.x, 20398213
-
Ruiz-Roig C, Vieitez C, Posas F, de Nadal E. The Rpd3L HDAC complex is essential for the heat stress response in yeast. Mol Microbiol 2010, 76:1049-1062. 10.1111/j.1365-2958.2010.07167.x, 20398213.
-
(2010)
Mol Microbiol
, vol.76
, pp. 1049-1062
-
-
Ruiz-Roig, C.1
Vieitez, C.2
Posas, F.3
de Nadal, E.4
|