A new subhaplogroup of native American Y-Chromosomes from the Andes

American Journal of Physical Anthropology

Volumn 146, Issue 4, 2011, Pages 553-559

  Jota, Marilza S ^a   Lacerda, Daniela R ^a   Sandoval, José R ^a   Vieira, Pedro Paulo R ^a,b   Santos Lopes, Simone S ^a   Bisso Machado, Rafael ^c   Paixão Cortes, Vanessa R ^c   Revollo, Susana ^d   Paz Y Miño, Cesar ^e   Fujita, Ricardo ^f   Salzano, Francisco M ^c   Bonatto, Sandro L ^g   Bortolini, Maria Cátira ^c   Santos, Fabrício R ^a  

^a FEDERAL UNIVERSITY OF MINAS GERAIS   (Brazil)

^b FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^c FEDERAL UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

^d UNIVERSIDAD MAYOR DE SAN ANDRÉS   (Bolivia)

^e UNIVERSIDAD DE LAS AMÉRICAS   (Ecuador)

^f UNIVERSIDAD DE SAN MARTÍN DE PORRES   (Peru)

^g PONTIFICAL CATHOLIC UNIVERSITY OF RIO GRANDE DO SUL   (Brazil)

Author keywords

Andes; SNP; South America; Y chromosome

Indexed keywords

AMERICAN INDIAN; ARTICLE; DNA SEQUENCE; GENETIC LINKAGE; GENETIC VARIABILITY; GENOTYPE; HAPLOTYPE; HUMAN; MICROSATELLITE MARKER; PHYLOGENY; PHYLOGEOGRAPHY; SINGLE NUCLEOTIDE POLYMORPHISM; SOUTH AMERICA; Y CHROMOSOME;

ANTHROPOLOGY, PHYSICAL; BOLIVIA; CHROMOSOMES, HUMAN, Y; EMIGRATION AND IMMIGRATION; HAPLOTYPES; HUMANS; INDIANS, SOUTH AMERICAN; MALE; MICROSATELLITE REPEATS; PERU; PHYLOGEOGRAPHY; POLYMORPHISM, SINGLE NUCLEOTIDE;

EID: 79958122524     PISSN: 00029483     EISSN: 10968644     Source Type: Journal    
DOI: 10.1002/ajpa.21519     Document Type: Article

References (27)

1. Bailliet G, Ramallo V, Muzzio M, García A, Santos MR, Alfaro EL, Dipierri JE, Salceda S, Carnese FR, Bravi CM, Bianchi NO, Bianchi DA,. 2009. Brief communication: restricted geographic distribution for Y-Q* paragroup in South America. Am J Phys Anthropol 140: 578-582.
2. Bandelt H-J, Forster P, Rohl A,. 1999. Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48. (Pubitemid 29024937)
3. Bortolini MC, Salzano FM, Thomas MG, Stuart S, Nasanen SP, Bau CH, Hutz MH, Layrisse Z, Petzl-Erler ML, Tsuneto LT, Hill K, Hurtado AM, Castro-de-Guerra D, Torres MM, Groot H, Michalski R, Nymadawa P, Bedoya G, Bradman N, Labuda D, Ruiz-Linares A,. 2003. Y chromosome evidence for differing ancient demographic histories in the Americas. Am J Hum Genet 73: 524-539. (Pubitemid 37076267)
4. Cõrdova JH, Sandoval J, Velásquez M, Távara C, Cotos D, Vásquez J, Barletta C, Fujita R, Descailleaux J,. 2008. Poblamiento del Continente Americano y del Perú sugerido de un análisis filogeográfico de haplogrupos del mtDNA en etnias nativas. Inferencias primarias. Archivos de Biología Andina 14: 23-39.
5. de Maat MP, Bladbjerg EM, Johansen LG, de Knijff P, Gram J, Kluft C, Jespersen J,. 1999. DNA-polymorphisms and plasma levels of vascular disease risk factors in Greenland Inuit-is there a relation with the low risk of cardiovascular disease in the Inuit? Thromb Haemost 81: 547-552. (Pubitemid 29178939)
6. Duncan NA, Pearsall DM, Benfer RA Jr,. 2009. Gourd and squash artifacts yield starch grains of feasting foods from preceramic Peru. Proc Natl Acad Sci USA 106: 13202-13206.
7. Fagundes NJR, Kanitz R, Eckert R, Valls ACS, Bogo MR, Salzano FM, Smith DG, Silva WA Jr, Zago MA, Ribeiro-dos-Santos AK, Santos SEB, Petzl-Erler ML, Bonatto SL,. 2008. Mitochondrial population genomics supports a single pre-Clovis origin with a coastal route for the peopling of the Americas. Am J Hum Genet 82: 583-592.
8. Fuselli S, Gilman RH, Chanock SJ, Bonatto SL, De Stefano G, Evans CA, Labuda D, Luiselli D, Salzano FM, Soto G, Vallejo G, Sajantila A, Pettener D, Tarazona-Santos E,. 2007. Analysis of nucleotide diversity of NAT2 coding region reveals homogeneity across Native American populations and high intra-population diversity. Pharmacogenomics J 7: 144-152. (Pubitemid 46577847)
9. González-José R, Bortolini MC, Santos FR, Bonatto SL,. 2008. The peopling of America: craniofacial shape variation on a continental scale and its interpretation from an interdisciplinary view. Am J Phys Anthropol 137: 175-187.
10. Karafet TM, Mendez FL, Meilerman MB, Underhill PA, Zegura SL, Hammer MF,. 2008. New binary polymorphisms reshape and increase resolution of the human Y chromosomal haplogroup tree. Genome Res 18: 830-838. (Pubitemid 351645073)
11. Lell JT, Brown MD, Schurr TG, Sukernik RI, Starikovskaya YB, Torroni A, Moore LG, Troup GM, Wallace DC,. 1997. Y chromosome polymorphisms in Native American and Siberian populations: identification of founding Native American Y chromosome haplotypes. Hum Genet 100: 536-543. (Pubitemid 28072351)
12. Lell JT, Sukernik RI, Starikovskaya YB, Su B, Jin L, Schurr TG, Underhill PA, Wallace DC,. 2002. The dual origin and Siberian affinities of Native American Y chromosomes. Am J Hum Genet 70: 192-206. (Pubitemid 34031708)
13. Pena SD, Santos FR, Bianchi NO, Bravi CM, Carnese FR, Rothhammer F, Gerelsaikhan T, Munkhtuja B, Oyunsuren T,. 1995. A major founder Y chromosome haplotype in Amerindians. Nat Genet 11: 15-16.
14. Perry L, Sandweiss DH, Piperno DR, Rademaker K, Malpass MA, Umire A, de la Vera P,. 2006. Early maize agriculture and interzonal interaction in southern Peru. Nature 440: 76-79. (Pubitemid 43336269)
15. Rasmussen M, Li Y, Lindgreen S, Pedersen JS, Albrechtsen A, Moltke I, Metspalu M, Metspalu E, et al. 2010. Ancient human genome sequence of an extinct Palaeo-Eskimo. Nature 463: 757-762.
16. Santos FR, Bonatto SL, Bortolini MC,. 2007. Molecular evidence from contemporary indigenous populations to the peopling of America. In:, Santos C, Lima M, editors. Recent advances in molecular biology and evolution: applications to biological anthropology. Kerala: Research Signpost.
17. Santos FR, Hurtz MH, Coimbra CEA., Santos RV, Salzano FM, Pena SD,. 1995. Further evidence of existence of major founder Y chromosome haplotype in Amerindians. Braz J Genet 18: 669-672. (Pubitemid 26032466)
18. Santos FR, Rodriguez-Delfin L, Pena SD, Moore J, Weiss KM,. 1996. North and South Amerindians may have the same major founder Y chromosome haplotype. Am J Hum Genet 58: 1369-1370. (Pubitemid 26153848)
19. Santos FR, Tyler-Smith C,. 1996. Reading the human Y chromosome: the emerging DNA markers and human genetic history. Braz J Genet 19: 665-670. (Pubitemid 27026196)
20. Schurr TG, Sherry ST,. 2004. Mitochondrial DNA and y chromosome diversity and the peopling of the Americas: evolutionary and demographic evidence. Am J Hum Biol 16: 420-439. (Pubitemid 39004157)
21. Seielstad M, Yuldasheva N, Singh N, Underhill P, Oefner P, Oefner P, Shen P, Wells RS,. 2003. A novel Y chromosome variant puts an upper limit on the timing of the first entry into the Americas. Am J Hum Genet 73: 700-705. (Pubitemid 37076286)
22. Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CE, Lin AA, Mitra M, Sil SK, Ramesh A, Ramesh A, Usha Rani MV, Thakur CM, Cavalli-Sforza LL, Majumder PP, Underhill PA,. 2006. Polarity and temporality of high-resolution Y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78: 202-221. (Pubitemid 43157561)
23. Tarazona-Santos E, Carvalho-Silva DR, Pettener D, Luiselli D, Stefano GF, Labarga CM, Rickards O, Tyler-Smith C, Pena SDJ, Santos FR,. 2001. Genetic differentiation in south Amerindians is related to environmental and cultural diversity: evidence from the Y chromosome. Am J Hum Genet 68: 1485-1496. (Pubitemid 32510624)
24. Underhill PA, Jin L, Zemans R, Oefner PJ, Cavalli-Sforza LL,. 1996. A pre-Columbian Y chromosome-specific transition and its implications for human evolutionary history. Proc Natl Acad Sci USA 93: 196-200. (Pubitemid 26038126)
25. Zegura SL, Karafet TM, Zhivotovsky LA, Hammer MF,. 2004. High-resolution SNPs and microsatellite haplotypes point to a single, recent entry of Native American Y chromosomes into the Americas. Mol Biol Evol 21: 164-175. (Pubitemid 38233530)
26. Zerjal T, Dashnyam B, Pandya A, Kayser M, Roewer L, Santos FR, Schiefenhövel W, Fretwell N, Jobling MA, Harihara S, Shimizu K, Semjidmaa D, Sajantila A, Salo P, Crawford MH, Ginter EK, Evgrafov OV, Tyler-Smith C,. 1997. Genetic relationships of Asians and northern Europeans, revealed by Y-chromosomal DNA analysis. Am J Hum Genet 60: 1174-1183. (Pubitemid 27194102)
27. Zhivotovsky LA, Underhill PA, Cinnioǧlu C, Kayser M, Morar B, Kivisild T, Scozzari R, Cruciani F, Destro-Bisol G,S, Pedini G, Chambers GK, Herrera RJ, Yong KK, Gresham D, Tournev I, Feldman MW, Kalaydjieva L,. 2004. The effective mutation rate at Y chromosome short tandem repeats, with application to human population divergence time. Am J Hum Genet 74: 50-61. (Pubitemid 38085237)