A predominantly neolithic origin for European paternal lineages

PLoS Biology

Volumn 8, Issue 1, 2010, Pages

  Balaresque, Patricia ^a   Bowden, Georgina R ^a   Adams, Susan M ^a   Leung, Ho Yee ^a   King, Turi E ^a   Rosser, Zoë H ^a   Goodwin, Jane ^b   Moisan, Jean Paul ^c   Richard, Christelle ^c   Millward, Ann ^d   Demaine, Andrew G ^d   Barbujani, Guido ^e   Previderè, Carlo ^f   Wilson, Ian J ^g   Tyler Smith, Chris ^h   Jobling, Mark A ^a  

^a UNIVERSITY OF LEICESTER   (United Kingdom)

^b Ty Celyn   (United Kingdom)

^c UNIVERSITÉ DE NANTES   (France)

^d PENINSULA MEDICAL SCHOOL   (United Kingdom)

^e UNIVERSITY OF FERRARA   (Italy)

^f UNIVERSITY OF PAVIA   (Italy)

^g NEWCASTLE UNIVERSITY   (United Kingdom)

^h WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

MICROSATELLITE DNA; MITOCHONDRIAL DNA;

ARTICLE; CULTURAL FACTOR; EUROPE; EXTRACHROMOSOMAL INHERITANCE; GENETIC LINE; GENETIC VARIABILITY; GEOGRAPHIC DISTRIBUTION; HAPLOTYPE; HUMAN; MALE; NEOLITHIC; PATERNITY; POPULATION GENETICS; Y CHROMOSOME; CAUCASIAN; GENETICS; GEOGRAPHY; MIGRATION; POPULATION DYNAMICS;

CHROMOSOMES, HUMAN, Y; EMIGRATION AND IMMIGRATION; EUROPE; EUROPEAN CONTINENTAL ANCESTRY GROUP; GENETIC VARIATION; GEOGRAPHY; HAPLOTYPES; HUMANS; MALE; MICROSATELLITE REPEATS; POPULATION DYNAMICS;

EID: 75749102229     PISSN: 15449173     EISSN: 15457885     Source Type: Journal    
DOI: 10.1371/journal.pbio.1000285     Document Type: Article

References (45)

1. Menozzi P, Piazza A, Cavalli-Sforza LL (1978) Synthetic maps of human gene frequencies in Europeans. Science 201: 786-792.
2. Jobling MA, Hurles ME, Tyler-Smith C (2004) Human evolutionary genetics: origins, peoples and disease. New York (New York): Garland Science. 523 p.
3. Pinhasi R, Fort J, Ammerman AJ (2005) Tracing the origin and spread of agriculture in Europe. PLoS Biol 3: e410. doi:10.1371/journal.pbio.0030410.
4. Cavalli-Sforza LL, Menozzi P, Piazza A (1994) The history and geography of human genes. Princeton (New Jersey): Princeton University Press. 518 p.
5. Chikhi L, Destro-Bisol G, Bertorelle G, Pascali V, Barbujani G (1998) Clines of nuclear DNA markers suggest a largely neolithic ancestry of the European gene pool. Proc Natl Acad Sci USA 95: 9053-9058.
6. Belle EM, Landry PA, Barbujani G (2006) Origins and evolution of the Europeans' genome: evidence from multiple microsatellite loci. Proc Biol Sci 273: 1595-1602.
7. Rosser ZH, Zerjal T, Hurles ME, Adojaan M, Alavantic D, et al. (2000) Y-chromosomal diversity within Europe is clinal and influenced primarily by geography, rather than by language. Am J Hum Genet 67: 1526-1543.
8. Semino O, Passarino G, Oefner PJ, Lin AA, Arbuzova S, et al. (2000) The genetic legacy of Paleolithic Homo sapiens sapiens in extant Europeans: a Y chromosome perspective. Science 290: 1155-1159.
9. Richards M, Côrte-Real H, Forster P, Macaulay V, Wilkinson-Herbots H, et al. (1996) Paleolithic and neolithic lineages in the European mitochondrial gene pool. Am J Hum Genet 59: 185-203.
10. Novembre J, Stephens M (2008) Interpreting principal component analyses of spatial population genetic variation. Nat Genet 40: 646-649.
11. Edmonds CA, Lillie AS, Cavalli-Sforza LL (2004) Mutations arising in the wave front of an expanding population. Proc Natl Acad Sci USA 101: 975-979.
12. Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, et al. (2004) Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area. Am J Hum Genet 74: 1023-1034.
13. Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, et al. (2004) Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in Europe. Am J Hum Genet 75: 128-137.
14. Cinnioglu C, King R, Kivisild T, Kalfoglu E, Atasoy S, et al. (2004) Excavating Y-chromosome haplotype strata in Anatolia. Hum Genet 114: 127-148.
15. Pericic M, Lauc LB, Klaric IM, Rootsi S, Janicijevic B, et al. (2005) High-resolution phylogenetic analysis of southeastern Europe traces major episodes of paternal gene flow among Slavic populations. Mol Biol Evol 22: 1964-1975.
16. Arredi B, Poloni ES, Paracchini S, Zerjal T, Fathallah DM, et al. (2004) A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa. Am J Hum Genet 75: 338-345.
17. Cruciani F, Santolamazza P, Shen PD, Macaulay V, Moral P, et al. (2002) A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes. Am J Hum Genet 70: 1197-1214.
18. Beleza S, Gusmao L, Amorim A, Carracedo A, Salas A (2005) The genetic legacy of western Bantu migrations. Hum Genet 117: 366-375.
19. Cordaux R, Deepa E, Vishwanathan H, Stoneking M (2004) Genetic evidence for the demic diffusion of agriculture to India. Science 304: 1125.
20. Hammer MF, Karafet TM, Park H, Omoto K, Harihara S, et al. (2006) Dual origins of the Japanese: common ground for hunter-gatherer and farmer Y chromosomes. J Hum Genet 51: 47-58.
21. Wen B, Li H, Lu D, Song X, Zhang F, et al. (2004) Genetic evidence supports demic diffusion of Han culture. Nature 431: 302-305.
22. Chikhi L, Nichols RA, Barbujani G, Beaumont MA (2002) Y genetic data support the Neolithic demic diffusion model. Proc Natl Acad Sci USA 99: 11008-11013.
23. Richards M, Macaulay V, Hickey E, Vega E, Sykes B, et al. (2000) Tracing European founder lineages in the near eastern mtDNA pool. Am J Hum Genet 67: 1251-1276.
24. Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, et al. (2004) The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool. Am J Hum Genet 75: 910-918.
25. Torroni A, Bandelt HJ, Macaulay V, Richards M, Cruciani F, et al. (2001) A signal, from human mtDNA, of postglacial recolonization in Europe. Am J Hum Genet 69: 844-852.
26. Wood ET, Stover DA, Ehret C, Destro-Bisol G, Spedini G, et al. (2005) Contrasting patterns of Y chromosome and mtDNA variation in Africa: evidence for sex-biased demographic processes. Eur J Hum Genet 13: 867-876.
27. Sokal RR, Oden NL, Wilson C (1991) Genetic evidence for the spread of agriculture in Europe by demic diffusion. Nature 351: 143-145.
28. Lao O, Lu TT, Nothnagel M, Junge O, Freitag-Wolf S, et al. (2008) Correlation between genetic and geographic structure in Europe. Curr Biol 18: 1241-1248.
29. Novembre J, Johnson T, Bryc K, Kutalik Z, Boyko AR, et al. (2008) Genes mirror geography within Europe. Nature 456: 98-101.
30. Auton A, Bryc K, Boyko A, Lohmueller K, Novembre J, et al. (2009) Global distribution of genomic diversity underscores rich complex history of continental human populations. Genome Res 19: 795-803.
31. Adams SM, Bosch E, Balaresque PL, Lee AC, Arroyo E, et al. (2008) The genetic legacy of religious diversity and intolerance: paternal lineages of Christians, Jews and Muslims in the Iberian Peninsula. Am J Hum Genet 83: 725-736.
32. Bosch E, Lee AC, Calafell F, Arroyo E, Henneman P, et al. (2002) High resolution Y chromosome typing: 19 STRs amplified in three multiplex reactions. Forensic Sci Int 125: 42-51.
33. Parkin EJ, Kraayenbrink T, van Driem GL, Tshering K, de Knijff P, et al. (2006) 26-locus Y-STR typing in a Bhutanese population sample. Forensic Sci Int 161: 1-7.
34. Kayser M, Krawczak M, Excoffier L, Dieltjes P, Corach D, et al. (2001) An extensive analysis of Y-chromosomal microsatellite haplotypes in globally dispersed human populations. Am J Hum Genet 68: 990-1018.
35. Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, et al. (2006) Polarity and temporality of high-resolution Y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of Central Asian pastoralists. Am J Hum Genet 78: 202-221.
36. Goldstein DB, Linares AR, Cavalli-Sforza LL, Feldman MW (1995) An evaluation of genetic distances for use with microsatellite loci. Genetics 139: 463-471.
37. R Development Core Team (2007) R: a language and environment for statistical computing. Vienna (Austria): R Foundation for Statistical Computing.
38. Bandelt H-J, Forster P, Röhl A (1999) Median-joining networks for inferring intraspecific phylogenies. Mol Biol Evol 16: 37-48.
39. Wilson IJ, Weale ME, Balding DJ (2003) Inferences from DNA data: population histories, evolutionary processes and forensic match probabilities. J Roy Statist Soc A 166: 1-33.
40. Marjanovic D, Fornarino S, Montagna S, Primorac D, Hadziselimovic R, et al. (2005) The peopling of modern Bosnia-Herzegovina: Y-chromosome haplogroups in the three main ethnic groups. Ann Hum Genet 69: 757-763.
41. Kayser M, Lao O, Anslinger K, Augustin C, Bargel G, et al. (2005) Significant genetic differentiation between Poland and Germany follows present-day political borders, as revealed by Y-chromosome analysis. Hum Genet 117: 428-443.
42. King RJ, Ozcan SS, Carter T, Kalfoglu E, Atasoy S, et al. (2008) Differential Y-chromosome Anatolian influences on the Greek and Cretan Neolithic. Ann Hum Genet 72: 205-214.
43. Moore LT, McEvoy B, Cape E, Simms K, Bradley DG (2006) A Y-chromosome signature of hegemony in Gaelic Ireland. Am J Hum Genet 78: 334-338.
44. Contu D, Morelli L, Santoni F, Foster JW, Francalacci P, et al. (2008) Y-chromosome based evidence for pre-neolithic origin of the genetically homogeneous but diverse Sardinian population: inference for association scans. PLoS ONE 3: e1430. doi:10.1371/journal.pone.0001430.
45. Balanovsky O, Rootsi S, Pshenichnov A, Kivisild T, Churnosov M, et al. (2008) Two sources of the Russian patrilineal heritage in their Eurasian context. Am J Hum Genet 82: 236-250.