From expression pattern to genetic association in asthma and asthma-related phenotypes

BMC Research Notes

Volumn 5, Issue , 2012, Pages

  Vaillancourt, Vanessa T ^a   Bordeleau, Martine ^b   Laviolette, Michel ^b   Laprise, Catherine ^a  

^a UNIVERSITÉ DU QUÉBEC À CHICOUTIMI   (Canada)

^b LAVAL UNIVERSITY   (Canada)

Author keywords

ADH1B; ADRA2A; AGC1; Association study; Asthma; Atopic asthma; Atopy; Expression profile; IFI6; Microarrays

Indexed keywords

ADOLESCENT; ADULT; ARTICLE; ASTHMA; CANADA; CASE CONTROL STUDY; CHILD; FEMALE; GENE EXPRESSION PROFILING; GENETICS; HUMAN; INFANT; MALE; MIDDLE AGED; PHENOTYPE; PRESCHOOL CHILD;

ADOLESCENT; ADULT; ASTHMA; CANADA; CASE-CONTROL STUDIES; CHILD; CHILD, PRESCHOOL; FEMALE; GENE EXPRESSION PROFILING; HUMANS; INFANT; MALE; MIDDLE AGED; PHENOTYPE; YOUNG ADULT;

EID: 84868653507     PISSN: None     EISSN: 17560500     Source Type: Journal    
DOI: 10.1186/1756-0500-5-630     Document Type: Article

References (45)

1. The pathophysiology of asthma. Maddox L, Schwartz DA, Annu Rev Med 2002 53 477 498 10.1146/annurev.med.53.082901.103921 11818486
2. Airway remodeling in asthma. Elias JA, Zhu Z, Chupp G, Homer RJ, J Clin Invest 1999 104 1001 1006 10.1172/JCI8124 10525034
3. A revised nomenclature for allergy. Johansson SG, Hourihane JO, Bousquet J, Bruijnzeel-Koomen C, Dreborg S, Haahtela T, Kowalski ML, Mygind N, Ring J, van Cauwenberge P, et al. Allergy 2001 56 813 824 10.1034/j.1398-9995.2001.t01- 1-00001.x 11551246
4. Immunological and genetic aspects of asthma and allergy. Madore AM, Laprise C, J Asthma Allergy 2010 3 107 121 21437045
5. The search for genetic variants and epigenetics related to asthma. Lee SH, Park JS, Park CS, Allergy Asthma Immunol Res 2011 3 236 244 10.4168/aair.2011.3.4.236 21966603
6. Microarray-based identification of novel biomarkers in asthma. Izuhara K, Saito H, Allergol Int 2006 55 361 367 10.2332/allergolint.55.361 17130677
7. The use and analysis of microarray data. Butte A, Nat Rev Drug Discov 2002 1 951 960 10.1038/nrd961 12461517
8. Functional classes of bronchial mucosa genes that are differentially expressed in asthma. Laprise C, Sladek R, Ponton A, Bernier MC, Hudson TJ, Laviolette M, BMC Genomics 2004 5 21 10.1186/1471-2164-5-21 15038835
9. A comparison of two sets of microarray experiments to define allergic asthma expression pattern. Chamberland A, Madore A-M, Tremblay K, Laviolette M, Laprise C, Exp Lung Res 2009 35 399 410 10.1080/01902140902745174 19842841
10. Genetic variation in immune signaling genes differentially expressed in asthmatic lung tissues. Tremblay K, Daley D, Chamberland A, Lemire M, Montpetit A, Laviolette M, Musk AW, James AL, Chan-Yeung M, Becker A, et al. J Allergy Clin Immunol 2008 122 529 536 e517 10.1016/j.jaci.2008.05.049 18774388
11. Association study between the CX3CR1 gene and asthma. Tremblay K, Lemire M, Provost V, Pastinen T, Renaud Y, Sandford AJ, Laviolette M, Hudson TJ, Laprise C, Genes Immun 2006 7 632 639 10.1038/sj.gene.6364340 17082760
12. Association Study of Genes Associated to Asthma in a Specific Environment, in an Asthma Familial Collection Located in a Rural Area Influenced by Different Industries. Morin A, Brook JR, Duchaîne C, Laprise C, Int J Environ Res Public Health 2012 9 2620 2635 10.3390/ijerph9082620 23066387
13. Seventeenth-century European origins of hereditary diseases in the Saguenay population (Quebec, Canada). Heyer E, Tremblay M, Desjardins B, Hum Biol 1997 69 209 225 9057345
14. Association of vitamin D receptor genetic variants with susceptibility to asthma and atopy. Poon AH, Laprise C, Lemire M, Montpetit A, Sinnett D, Schurr E, Hudson TJ, Am J Respir Crit Care Med 2004 170 967 973 10.1164/rccm.200403- 412OC 15282199
15. Association of urokinase-type plasminogen activator with asthma and atopy. Begin P, Tremblay K, Daley D, Lemire M, Claveau S, Salesse C, Kacel S, Montpetit A, Becker A, Chan-Yeung M, et al. Am J Respir Crit Care Med 2007 175 1109 1116 10.1164/rccm.200607-1012OC 17363771
16. ATS statement-Snowbird workshop on standardization of spirometry. Society AT, Ann Rev Respir Dis 1979 119 831 838
17. A large-scale, consortium-based genomewide association study of asthma. Moffatt MF, Gut IG, Demenais F, Strachan DP, Bouzigon E, Heath S, von Mutius E, Farrall M, Lathrop M, Cookson WO, N Engl J Med 2010 363 1211 1221 10.1056/NEJMoa0906312 20860503
18. Family-based tests of association in the presence of linkage. Lake SL, Blacker D, Laird NM, Am J Hum Genet 2000 67 1515 1525 10.1086/316895 11058432
19. A simple correction for multiple testing for single-nucleotide polymorphisms in linkage disequilibrium with each other. Nyholt DR, Am J Hum Genet 2004 74 765 769 10.1086/383251 14997420
20. Human genetic variation recognizes functional elements in noncoding sequence. Lomelin D, Jorgenson E, Risch N, Genome Res 2010 20 311 319 10.1101/gr.094151.109 20032171
21. Control of cytokine gene transcription in Th1 and Th2 cells. Bowen H, Kelly A, Lee T, Lavender P, Clin Exp Allergy 2008 38 1422 1431 10.1111/j.1365-2222.2008.03067.x 18647314
22. Alternative splicing in the aggrecan G3 domain influences binding interactions with tenascin-C and other extracellular matrix proteins. Day JM, Olin AI, Murdoch AD, Canfield A, Sasaki T, Timpl R, Hardingham TE, Aspberg A, J Biol Chem 2004 279 12511 12518 14722076
23. Tenascin-C is an endogenous activator of Toll-like receptor 4 that is essential for maintaining inflammation in arthritic joint disease. Midwood K, Sacre S, Piccinini AM, Inglis J, Trebaul A, Chan E, Drexler S, Sofat N, Kashiwagi M, Orend G, et al. Nat Med 2009 15 774 780 10.1038/nm.1987 19561617
24. Tenascin is increased in airway basement membrane of asthmatics and decreased by an inhaled steroid. Laitinen A, Altraja A, KÃmpe M, Linden M, Virtanen I, Laitinen LA, Am J Respir Crit Care Med 1997 156 951 958 9310019
25. Inflammation and structural changes in the airways of patients with atopic and nonatopic asthma. BHR Group. Amin K, Ludviksdottir D, Janson C, Nettelbladt O, Bjornsson E, Roomans GM, Boman G, Seveus L, Venge P, Am J Respir Crit Care Med 2000 162 2295 2301 11112154
26. Coding SNP in tenascin-C Fn-III-D domain associates with adult asthma. Matsuda A, Hirota T, Akahoshi M, Shimizu M, Tamari M, Miyatake A, Takahashi A, Nakashima K, Takahashi N, Obara K, et al. Hum Mol Genet 2005 14 2779 2786 10.1093/hmg/ddi311 16115819
27. Risk factors for osteoarthritis: genetics. Spector TD, MacGregor AJ, Osteoarthr Cartil 2004 12 Suppl A 39 44 14698640
28. Genetic associations in peripheral joint osteoarthritis and spinal degenerative disease: a systematic review. Ryder JJ, Garrison K, Song F, Hooper L, Skinner J, Loke Y, Loughlin J, Higgins JP, MacGregor AJ, Ann Rheum Dis 2008 67 584 591 17720722
29. G1P3, an IFN-induced survival factor, antagonizes TRAIL-induced apoptosis in human myeloma cells. Cheriyath V, Glaser KB, Waring JF, Baz R, Hussein MA, Borden EC, J Clin Invest 2007 117 3107 3117 10.1172/JCI31122 17823654
30. Inhibition of G1P3 expression found in the differential display study on respiratory syncytial virus infection. Zhao D, Peng D, Li L, Zhang Q, Zhang C, Virol J 2008 5 114 10.1186/1743-422X-5-114 18838000
31. Adrenergic receptor signal transduction and regulation. Hein L, Kobilka BK, Neuropharmacology 1995 34 357 366 10.1016/0028-3908(95)00018-2 7566466
32. Allergic lung inflammation affects central noradrenergic control of cholinergic outflow to the airways in ferrets. Wilson CG, Akhter S, Mayer CA, Kc P, Balan KV, Ernsberger P, Haxhiu MA, J Appl Physiol 2007 103 2095 2104 10.1152/japplphysiol.01182.2006 17872402
33. Efficacy is a contributing factor to the clinical onset of bronchodilation of inhaled beta(2)-adrenoceptor agonists. Rosethorne EM, Turner RJ, Fairhurst RA, Charlton SJ, Naunyn Schmiedebergs Arch Pharmacol 2010 382 255 263 10.1007/s00210-010-0533-6 20694793
34. Possible protective effects of the Glu27 allele of beta2-adrenergic receptor polymorphism in Thai asthmatic patients. Limsuwan T, Thakkinstian A, Verasertniyom O, Vanichapuntu M, Attia J, Janwityanujit S, Nantiruj K, Asian Pac J Allergy Immunol 2010 28 107 114 21038778
35. Beta(2)-adrenergic receptor haplotype/polymorphisms and asthma susceptibility and clinical phenotype in a Chinese Han population. Qiu YY, Zhang XL, Qin Y, Yin KS, Zhang DP, Allergy Asthma Proc 2010 31 91 97 10.2500/aap.2010.31.3371 20929600
36. Association of beta-adrenergic receptor polymorphism with work-related symptoms in workers exposed to wheat flour. Hur GY, Park HJ, Lee HY, Koh DH, Lee BJ, Choi GS, Kim SH, Ye YM, Park HS, Yonsei Med J 2011 52 488 494 10.3349/ymj.2011.52.3.488 21488193
37. Pharmacogenetics of beta2 adrenergic receptor gene polymorphisms, long-acting beta-agonists and asthma. Chung LP, Waterer G, Thompson PJ, Clin Exp Allergy 2011 41 312 326 10.1111/j.1365-2222.2011.03696.x 21294785
38. Aging-related hyperinflammation in endotoxemia is mediated by the alpha2A-adrenoceptor and CD14/TLR4 pathways. Leong J, Zhou M, Jacob A, Wang P, Life Sci 2010 86 740 746 10.1016/j.lfs.2010.03.009 20302880
39. Presynaptic alpha2-adrenoceptors inhibit excitatory synaptic transmission in rat brain stem. Bertolino M, Vicini S, Gillis R, Travagli A, Am J Physiol 1997 272 654 661 9124588
40. Presynaptic alpha2-adrenoceptors control excitatory, but not inhibitory, transmission at rat hippocampal synapses. Boehm S, J Physiol 1999 519 Pt 2 439 449 10457061
41. The genetics of alcohol metabolism: role of alcohol dehydrogenase and aldehyde dehydrogenase variants. Edenberg HJ, Alcohol Res Health 2007 30 5 13 17718394
42. Immunoglobulin E sensitization to cross-reactive carbohydrate determinants: epidemiological study of clinical relevance and role of alcohol consumption. Linneberg A, Fenger RV, Husemoen LL, Vidal C, Vizcaino L, Gonzalez-Quintela A, Int Arch Allergy Immunol 2010 153 86 94 10.1159/000301583 20357489
43. Genetic determinants of both ethanol and acetaldehyde metabolism influence alcohol hypersensitivity and drinking behaviour among Scandinavians. Linneberg A, Gonzalez-Quintela A, Vidal C, Jorgensen T, Fenger M, Hansen T, Pedersen O, Husemoen LL, Clin Exp Allergy 2010 40 123 130 20205700
44. Aerosolized acetaldehyde, but not ethanol, induces histamine-mediated bronchoconstriction in guinea-pigs. Myou S, Fujimura M, Bando T, Saito M, Matsuda T, Clin Exp Allergy 1994 24 140 143 10.1111/j.1365-2222.1994.tb00210.x 7514491
45. Associations of genetic polymorphisms in innate immunity genes with asthma and asthma-related phenotypes. Daley D, He J-Q, Akhabir L, Stefanowicz D, Becker AB, Chan-Yeung M, Tripp B, Zamar D, Bossé Y, Kozyrskyj AL, et al. J Allergy Clin Immunol in press