메뉴 건너뛰기




Volumn 2, Issue 1, 2012, Pages

The nuclear localization of SWI/SNF proteins is subjected to oxygen regulation

Author keywords

Hypoxia response; Live cell imaging; Oxygen regulation; Protein localization; SWI SNF

Indexed keywords

EUKARYOTA;

EID: 84868617799     PISSN: None     EISSN: 20453701     Source Type: Journal    
DOI: 10.1186/2045-3701-2-30     Document Type: Article
Times cited : (46)

References (35)
  • 1
    • 0029842459 scopus 로고    scopus 로고
    • Oxygen sensing and molecular adaptation to hypoxia
    • Bunn HF, Poyton RO. Oxygen sensing and molecular adaptation to hypoxia. Physiol Rev 1996, 76:839-885.
    • (1996) Physiol Rev , vol.76 , pp. 839-885
    • Bunn, H.F.1    Poyton, R.O.2
  • 2
    • 46149124043 scopus 로고    scopus 로고
    • The expanding universe of hypoxia
    • 10.1007/s00109-008-0364-9, 2720566, 18551266
    • Zhang H, Semenza GL. The expanding universe of hypoxia. J Mol Med 2008, 86:739-746. 10.1007/s00109-008-0364-9, 2720566, 18551266.
    • (2008) J Mol Med , vol.86 , pp. 739-746
    • Zhang, H.1    Semenza, G.L.2
  • 3
    • 85047682984 scopus 로고    scopus 로고
    • Regulation of oxygen homeostasis by hypoxia-inducible factor 1
    • Semenza GL. Regulation of oxygen homeostasis by hypoxia-inducible factor 1. Physiology (Bethesda) 2009, 24:97-106.
    • (2009) Physiology (Bethesda) , vol.24 , pp. 97-106
    • Semenza, G.L.1
  • 4
    • 43049104517 scopus 로고    scopus 로고
    • Acute hypoxia, diabetes, and neuroimmune dysregulation: converging mechanisms in the brain
    • Johnson DR, Sherry CL, York JM, Freund GG. Acute hypoxia, diabetes, and neuroimmune dysregulation: converging mechanisms in the brain. Neuroscientist 2008, 14:235-239.
    • (2008) Neuroscientist , vol.14 , pp. 235-239
    • Johnson, D.R.1    Sherry, C.L.2    York, J.M.3    Freund, G.G.4
  • 5
    • 43549094707 scopus 로고    scopus 로고
    • Hypoxia-induced signaling in the cardiovascular system
    • 10.1146/annurev.physiol.70.113006.100526, 2871679, 17850210
    • Simon MC, Liu L, Barnhart BC, Young RM. Hypoxia-induced signaling in the cardiovascular system. Annu Rev Physiol 2008, 70:51-71. 10.1146/annurev.physiol.70.113006.100526, 2871679, 17850210.
    • (2008) Annu Rev Physiol , vol.70 , pp. 51-71
    • Simon, M.C.1    Liu, L.2    Barnhart, B.C.3    Young, R.M.4
  • 6
    • 57149100949 scopus 로고    scopus 로고
    • A predictive model of the oxygen and heme regulatory network in yeast
    • 10.1371/journal.pcbi.1000224, 2573020, 19008939
    • Kundaje A, Xin X, Lan C, Lianoglou S, Zhou M, Zhang L, Leslie C. A predictive model of the oxygen and heme regulatory network in yeast. PLoS Comput Biol 2008, 4:e1000224. 10.1371/journal.pcbi.1000224, 2573020, 19008939.
    • (2008) PLoS Comput Biol , vol.4
    • Kundaje, A.1    Xin, X.2    Lan, C.3    Lianoglou, S.4    Zhou, M.5    Zhang, L.6    Leslie, C.7
  • 7
    • 11244315697 scopus 로고    scopus 로고
    • Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1
    • 10.1182/blood-2004-07-2958, 15374877
    • Manalo DJ, Rowan A, Lavoie T, Natarajan L, Kelly BD, Ye SQ, Garcia JG, Semenza GL. Transcriptional regulation of vascular endothelial cell responses to hypoxia by HIF-1. Blood 2005, 105:659-669. 10.1182/blood-2004-07-2958, 15374877.
    • (2005) Blood , vol.105 , pp. 659-669
    • Manalo, D.J.1    Rowan, A.2    Lavoie, T.3    Natarajan, L.4    Kelly, B.D.5    Ye, S.Q.6    Garcia, J.G.7    Semenza, G.L.8
  • 8
    • 33646765735 scopus 로고    scopus 로고
    • Gene expression profiling reveals the profound upregulation of hypoxia-responsive genes in primary human astrocytes
    • 10.1152/physiolgenomics.00315.2005, 16507782
    • Mense SM, Sengupta A, Zhou M, Lan C, Bentsman G, Volsky DJ, Zhang L. Gene expression profiling reveals the profound upregulation of hypoxia-responsive genes in primary human astrocytes. Physiol Genomics 2006, 25:435-449. 10.1152/physiolgenomics.00315.2005, 16507782.
    • (2006) Physiol Genomics , vol.25 , pp. 435-449
    • Mense, S.M.1    Sengupta, A.2    Zhou, M.3    Lan, C.4    Bentsman, G.5    Volsky, D.J.6    Zhang, L.7
  • 9
    • 0036616961 scopus 로고    scopus 로고
    • Mga2p processing by hypoxia and unsaturated fatty acids in Saccharomyces cerevisiae: impact on LORE-dependent gene expression
    • 10.1128/EC.1.3.481-490.2002, 118009, 12455996
    • Jiang Y, Vasconcelles MJ, Wretzel S, Light A, Gilooly L, McDaid K, Oh CS, Martin CE, Goldberg MA. Mga2p processing by hypoxia and unsaturated fatty acids in Saccharomyces cerevisiae: impact on LORE-dependent gene expression. Eukaryot Cell 2002, 1:481-490. 10.1128/EC.1.3.481-490.2002, 118009, 12455996.
    • (2002) Eukaryot Cell , vol.1 , pp. 481-490
    • Jiang, Y.1    Vasconcelles, M.J.2    Wretzel, S.3    Light, A.4    Gilooly, L.5    McDaid, K.6    Oh, C.S.7    Martin, C.E.8    Goldberg, M.A.9
  • 10
    • 0023768278 scopus 로고
    • ROX1 encodes a heme-induced repression factor regulating ANB1 and CYC7 of Saccharomyces cerevisiae
    • 365554, 3062365
    • Lowry CV, Zitomer RS. ROX1 encodes a heme-induced repression factor regulating ANB1 and CYC7 of Saccharomyces cerevisiae. Mol Cell Biol 1988, 8:4651-4658. 365554, 3062365.
    • (1988) Mol Cell Biol , vol.8 , pp. 4651-4658
    • Lowry, C.V.1    Zitomer, R.S.2
  • 11
    • 80053185137 scopus 로고    scopus 로고
    • Hypoxia elicits broad and systematic changes in protein subcellular localization
    • 10.1152/ajpcell.00481.2010, 3191569, 21753182
    • Henke RM, Dastidar RG, Shah AN, Cadinu D, Yao X, Hooda J, Zhang L. Hypoxia elicits broad and systematic changes in protein subcellular localization. Am J Physiol Cell Physiol 2011, 301:C913-C928. 10.1152/ajpcell.00481.2010, 3191569, 21753182.
    • (2011) Am J Physiol Cell Physiol , vol.301
    • Henke, R.M.1    Dastidar, R.G.2    Shah, A.N.3    Cadinu, D.4    Yao, X.5    Hooda, J.6    Zhang, L.7
  • 13
    • 14544308853 scopus 로고    scopus 로고
    • Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes
    • 10.1016/j.bbaexp.2004.10.005, 15627498
    • Mohrmann L, Verrijzer CP. Composition and functional specificity of SWI2/SNF2 class chromatin remodeling complexes. Biochim Biophys Acta 2005, 1681:59-73. 10.1016/j.bbaexp.2004.10.005, 15627498.
    • (2005) Biochim Biophys Acta , vol.1681 , pp. 59-73
    • Mohrmann, L.1    Verrijzer, C.P.2
  • 14
    • 0034026193 scopus 로고    scopus 로고
    • Promoter targeting and chromatin remodeling by the SWI/SNF complex
    • 10.1016/S0959-437X(00)00068-X, 10753786
    • Peterson CL, Workman JL. Promoter targeting and chromatin remodeling by the SWI/SNF complex. Curr Opin Genet Dev 2000, 10:187-192. 10.1016/S0959-437X(00)00068-X, 10753786.
    • (2000) Curr Opin Genet Dev , vol.10 , pp. 187-192
    • Peterson, C.L.1    Workman, J.L.2
  • 15
    • 3242680774 scopus 로고    scopus 로고
    • Molecular Architecture of the S. cerevisiae SAGA Complex
    • 10.1016/j.molcel.2004.06.005, 15260971
    • Wu P-YJ, Ruhlmann C, Winston F, Schultz P. Molecular Architecture of the S. cerevisiae SAGA Complex. Molecular Cell 2004, 15:199-208. 10.1016/j.molcel.2004.06.005, 15260971.
    • (2004) Molecular Cell , vol.15 , pp. 199-208
    • Wu, P.-Y.J.1    Ruhlmann, C.2    Winston, F.3    Schultz, P.4
  • 16
    • 2642635832 scopus 로고    scopus 로고
    • Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP
    • 10.1101/gad.12.11.1678, 316871, 9620854
    • Chamberlain JR, Lee Y, Lane WS, Engelke DR. Purification and characterization of the nuclear RNase P holoenzyme complex reveals extensive subunit overlap with RNase MRP. Genes Dev 1998, 12:1678-1690. 10.1101/gad.12.11.1678, 316871, 9620854.
    • (1998) Genes Dev , vol.12 , pp. 1678-1690
    • Chamberlain, J.R.1    Lee, Y.2    Lane, W.S.3    Engelke, D.R.4
  • 17
    • 70350539592 scopus 로고    scopus 로고
    • Hijacking the chromatin remodeling machinery: impact of SWI/SNF perturbations in cancer
    • 10.1158/0008-5472.CAN-09-2166, 3272668, 19843852
    • Weissman B, Knudsen KE. Hijacking the chromatin remodeling machinery: impact of SWI/SNF perturbations in cancer. Cancer Res 2009, 69:8223-8230. 10.1158/0008-5472.CAN-09-2166, 3272668, 19843852.
    • (2009) Cancer Res , vol.69 , pp. 8223-8230
    • Weissman, B.1    Knudsen, K.E.2
  • 18
    • 79959653996 scopus 로고    scopus 로고
    • SWI/SNF nucleosome remodellers and cancer
    • 10.1038/nrc3068, 21654818
    • Wilson BG, Roberts CW. SWI/SNF nucleosome remodellers and cancer. Nat Rev Cancer 2011, 11:481-492. 10.1038/nrc3068, 21654818.
    • (2011) Nat Rev Cancer , vol.11 , pp. 481-492
    • Wilson, B.G.1    Roberts, C.W.2
  • 20
    • 34247629588 scopus 로고    scopus 로고
    • Genetic reconstruction of a functional transcriptional regulatory network
    • 10.1038/ng2012, 17417638
    • Hu Z, Killion PJ, Iyer VR. Genetic reconstruction of a functional transcriptional regulatory network. Nat Genet 2007, 39:683-687. 10.1038/ng2012, 17417638.
    • (2007) Nat Genet , vol.39 , pp. 683-687
    • Hu, Z.1    Killion, P.J.2    Iyer, V.R.3
  • 21
    • 33748852396 scopus 로고    scopus 로고
    • Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae
    • 10.1128/EC.00107-06, 1563586, 16963631
    • Lai LC, Kosorukoff AL, Burke PV, Kwast KE. Metabolic-state-dependent remodeling of the transcriptome in response to anoxia and subsequent reoxygenation in Saccharomyces cerevisiae. Eukaryot Cell 2006, 5:1468-1489. 10.1128/EC.00107-06, 1563586, 16963631.
    • (2006) Eukaryot Cell , vol.5 , pp. 1468-1489
    • Lai, L.C.1    Kosorukoff, A.L.2    Burke, P.V.3    Kwast, K.E.4
  • 22
    • 67650725820 scopus 로고    scopus 로고
    • The biology of chromatin remodeling complexes
    • 10.1146/annurev.biochem.77.062706.153223, 19355820
    • Clapier CR, Cairns BR. The biology of chromatin remodeling complexes. Annu Rev Biochem 2009, 78:273-304. 10.1146/annurev.biochem.77.062706.153223, 19355820.
    • (2009) Annu Rev Biochem , vol.78 , pp. 273-304
    • Clapier, C.R.1    Cairns, B.R.2
  • 23
    • 0035726333 scopus 로고    scopus 로고
    • MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae
    • 10.1128/MCB.21.18.6161-6169.2001, 87333, 11509659
    • Jiang Y, Vasconcelles MJ, Wretzel S, Light A, Martin CE, Goldberg MA. MGA2 is involved in the low-oxygen response element-dependent hypoxic induction of genes in Saccharomyces cerevisiae. Mol Cell Biol 2001, 21:6161-6169. 10.1128/MCB.21.18.6161-6169.2001, 87333, 11509659.
    • (2001) Mol Cell Biol , vol.21 , pp. 6161-6169
    • Jiang, Y.1    Vasconcelles, M.J.2    Wretzel, S.3    Light, A.4    Martin, C.E.5    Goldberg, M.A.6
  • 24
    • 0034463392 scopus 로고    scopus 로고
    • Rox1 mediated repression. Oxygen dependent repression in yeast
    • Kastaniotis AJ, Zitomer RS. Rox1 mediated repression. Oxygen dependent repression in yeast. Adv Exp Med Biol 2000, 475:185-195.
    • (2000) Adv Exp Med Biol , vol.475 , pp. 185-195
    • Kastaniotis, A.J.1    Zitomer, R.S.2
  • 25
    • 34249877438 scopus 로고    scopus 로고
    • Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement
    • 10.1038/nsmb1238, 17496903
    • Yang X, Zaurin R, Beato M, Peterson CL. Swi3p controls SWI/SNF assembly and ATP-dependent H2A-H2B displacement. Nat Struct Mol Biol 2007, 14:540-547. 10.1038/nsmb1238, 17496903.
    • (2007) Nat Struct Mol Biol , vol.14 , pp. 540-547
    • Yang, X.1    Zaurin, R.2    Beato, M.3    Peterson, C.L.4
  • 27
    • 76749169863 scopus 로고    scopus 로고
    • Understanding gene sequence variation in the context of transcription regulation in yeast
    • 10.1371/journal.pgen.1000800, 2794365, 20066030
    • Gat-Viks I, Meller R, Kupiec M, Shamir R. Understanding gene sequence variation in the context of transcription regulation in yeast. PLoS Genet 2010, 6:e1000800. 10.1371/journal.pgen.1000800, 2794365, 20066030.
    • (2010) PLoS Genet , vol.6
    • Gat-Viks, I.1    Meller, R.2    Kupiec, M.3    Shamir, R.4
  • 28
    • 63249087504 scopus 로고    scopus 로고
    • SWI/SNF regulates the cellular response to hypoxia
    • Kenneth NS, Mudie S, van Uden P, Rocha S. SWI/SNF regulates the cellular response to hypoxia. J Biol Chem 2009, 284:4123-4131.
    • (2009) J Biol Chem , vol.284 , pp. 4123-4131
    • Kenneth, N.S.1    Mudie, S.2    van Uden, P.3    Rocha, S.4
  • 29
    • 34147161066 scopus 로고    scopus 로고
    • Hypoxia-induced and stress-specific changes in chromatin structure and function
    • 10.1016/j.mrfmmm.2006.10.007, 1924842, 17292925
    • Johnson AB, Barton MC. Hypoxia-induced and stress-specific changes in chromatin structure and function. Mutat Res 2007, 618:149-162. 10.1016/j.mrfmmm.2006.10.007, 1924842, 17292925.
    • (2007) Mutat Res , vol.618 , pp. 149-162
    • Johnson, A.B.1    Barton, M.C.2
  • 31
    • 0348010307 scopus 로고    scopus 로고
    • A Mechanism of Oxygen Sensing in Yeast: Multiple Oxygen-Responsive Steps in the Heme Biosynthetic Pathway Affect Hap1 activity
    • 10.1074/jbc.M303677200, 14512429
    • Hon T, Dodd A, Dirmeier R, Gorman N, Sinclair PR, Zhang L, Poyton RO. A Mechanism of Oxygen Sensing in Yeast: Multiple Oxygen-Responsive Steps in the Heme Biosynthetic Pathway Affect Hap1 activity. J. Biol. Chem 2003, 278:50771-50780. 10.1074/jbc.M303677200, 14512429.
    • (2003) J. Biol. Chem , vol.278 , pp. 50771-50780
    • Hon, T.1    Dodd, A.2    Dirmeier, R.3    Gorman, N.4    Sinclair, P.R.5    Zhang, L.6    Poyton, R.O.7
  • 32
    • 0029960517 scopus 로고    scopus 로고
    • In vivo nuclear transport kinetics in Saccharomyces cerevisiae: a role for heat shock protein 70 during targeting and translocation
    • 10.1083/jcb.135.2.329, 2121037, 8896592
    • Shulga N, Roberts P, Gu Z, Spitz L, Tabb MM, Nomura M, Goldfarb DS. In vivo nuclear transport kinetics in Saccharomyces cerevisiae: a role for heat shock protein 70 during targeting and translocation. J Cell Biol 1996, 135:329-339. 10.1083/jcb.135.2.329, 2121037, 8896592.
    • (1996) J Cell Biol , vol.135 , pp. 329-339
    • Shulga, N.1    Roberts, P.2    Gu, Z.3    Spitz, L.4    Tabb, M.M.5    Nomura, M.6    Goldfarb, D.S.7
  • 33
    • 0033730722 scopus 로고    scopus 로고
    • The yeast nucleoporin Nup53p specifically interacts with Nic96p and is directly involved in nuclear protein import
    • 15044, 11071914
    • Fahrenkrog B, Hubner W, Mandinova A, Pante N, Keller W, Aebi U. The yeast nucleoporin Nup53p specifically interacts with Nic96p and is directly involved in nuclear protein import. Mol Biol Cell 2000, 11:3885-3896. 15044, 11071914.
    • (2000) Mol Biol Cell , vol.11 , pp. 3885-3896
    • Fahrenkrog, B.1    Hubner, W.2    Mandinova, A.3    Pante, N.4    Keller, W.5    Aebi, U.6
  • 34
    • 33748452139 scopus 로고    scopus 로고
    • Studying nuclear protein import in yeast
    • 10.1016/j.ymeth.2006.07.013, 16979507
    • Leslie DM, Timney B, Rout MP, Aitchison JD. Studying nuclear protein import in yeast. Methods 2006, 39:291-308. 10.1016/j.ymeth.2006.07.013, 16979507.
    • (2006) Methods , vol.39 , pp. 291-308
    • Leslie, D.M.1    Timney, B.2    Rout, M.P.3    Aitchison, J.D.4
  • 35
    • 0031806619 scopus 로고    scopus 로고
    • Molecular Mechanism Governing Heme Signaling in Yeast: a Higher-Order Complex Mediates Heme Regulation of the Transcriptional Activator HAP1
    • 108966, 9632766
    • Zhang L, Hach A, Wang C. Molecular Mechanism Governing Heme Signaling in Yeast: a Higher-Order Complex Mediates Heme Regulation of the Transcriptional Activator HAP1. Mol Cell Biol 1998, 18:3819-3828. 108966, 9632766.
    • (1998) Mol Cell Biol , vol.18 , pp. 3819-3828
    • Zhang, L.1    Hach, A.2    Wang, C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.