메뉴 건너뛰기




Volumn 91, Issue 5, 2012, Pages 849-862

Exploring population admixture dynamics via empirical and simulated genome-wide distribution of ancestral chromosomal segments

Author keywords

[No Author keywords available]

Indexed keywords

AFRICAN AMERICAN; ARTICLE; ETHNIC DIFFERENCE; EUROPEAN AMERICAN; GENE FLOW; GENETIC ANALYSIS; GENETIC VARIABILITY; HAPLOIDY; HUMAN; MEXICO; MIDDLE EAST; NORTH AFRICA; POPULATION GENETICS; PRIORITY JOURNAL; SIMULATION; SINGLE NUCLEOTIDE POLYMORPHISM;

EID: 84868470761     PISSN: 00029297     EISSN: 15376605     Source Type: Journal    
DOI: 10.1016/j.ajhg.2012.09.008     Document Type: Article
Times cited : (24)

References (54)
  • 1
    • 83455198491 scopus 로고    scopus 로고
    • A general mechanistic model for admixture histories of hybrid populations
    • P. Verdu, and N.A. Rosenberg A general mechanistic model for admixture histories of hybrid populations Genetics 189 2011 1413 1426
    • (2011) Genetics , vol.189 , pp. 1413-1426
    • Verdu, P.1    Rosenberg, N.A.2
  • 4
    • 0024209791 scopus 로고
    • Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci
    • R. Chakraborty, and K.M. Weiss Admixture as a tool for finding linked genes and detecting that difference from allelic association between loci Proc. Natl. Acad. Sci. USA 85 1988 9119 9123
    • (1988) Proc. Natl. Acad. Sci. USA , vol.85 , pp. 9119-9123
    • Chakraborty, R.1    Weiss, K.M.2
  • 5
    • 0031037972 scopus 로고    scopus 로고
    • Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations
    • P.M. McKeigue Mapping genes underlying ethnic differences in disease risk by linkage disequilibrium in recently admixed populations Am. J. Hum. Genet. 60 1997 188 196
    • (1997) Am. J. Hum. Genet. , vol.60 , pp. 188-196
    • McKeigue, P.M.1
  • 6
    • 0032231748 scopus 로고    scopus 로고
    • Mapping genes that underlie ethnic differences in disease risk: Methods for detecting linkage in admixed populations, by conditioning on parental admixture
    • P.M. McKeigue Mapping genes that underlie ethnic differences in disease risk: methods for detecting linkage in admixed populations, by conditioning on parental admixture Am. J. Hum. Genet. 63 1998 241 251
    • (1998) Am. J. Hum. Genet. , vol.63 , pp. 241-251
    • McKeigue, P.M.1
  • 7
    • 6344244729 scopus 로고    scopus 로고
    • Statistical tests for admixture mapping with case-control and cases-only data
    • G. Montana, and J.K. Pritchard Statistical tests for admixture mapping with case-control and cases-only data Am. J. Hum. Genet. 75 2004 771 789
    • (2004) Am. J. Hum. Genet. , vol.75 , pp. 771-789
    • Montana, G.1    Pritchard, J.K.2
  • 8
    • 0028001245 scopus 로고
    • Mapping by admixture linkage disequilibrium in human populations: Limits and guidelines
    • J.C. Stephens, D. Briscoe, and S.J. O'Brien Mapping by admixture linkage disequilibrium in human populations: limits and guidelines Am. J. Hum. Genet. 55 1994 809 824
    • (1994) Am. J. Hum. Genet. , vol.55 , pp. 809-824
    • Stephens, J.C.1    Briscoe, D.2    O'Brien, S.J.3
  • 10
    • 0026030165 scopus 로고
    • The genetic structure of admixed populations
    • J.C. Long The genetic structure of admixed populations Genetics 127 1991 417 428
    • (1991) Genetics , vol.127 , pp. 417-428
    • Long, J.C.1
  • 11
    • 0029075560 scopus 로고
    • The transmission/disequilibrium test: History, subdivision, and admixture
    • W.J. Ewens, and R.S. Spielman The transmission/disequilibrium test: history, subdivision, and admixture Am. J. Hum. Genet. 57 1995 455 464
    • (1995) Am. J. Hum. Genet. , vol.57 , pp. 455-464
    • Ewens, W.J.1    Spielman, R.S.2
  • 13
    • 62449182499 scopus 로고    scopus 로고
    • Inference of historical changes in migration rate from the lengths of migrant tracts
    • J.E. Pool, and R. Nielsen Inference of historical changes in migration rate from the lengths of migrant tracts Genetics 181 2009 711 719
    • (2009) Genetics , vol.181 , pp. 711-719
    • Pool, J.E.1    Nielsen, R.2
  • 14
    • 0015925551 scopus 로고
    • Admixture studies and the detection of selection
    • J. Adams, and R.H. Ward Admixture studies and the detection of selection Science 180 1973 1137 1143
    • (1973) Science , vol.180 , pp. 1137-1143
    • Adams, J.1    Ward, R.H.2
  • 15
    • 31344452930 scopus 로고    scopus 로고
    • The admixture linkage disequilibrium and genetic linkage inference on the gradual admixture population
    • W. Guo, and W.K. Fung The admixture linkage disequilibrium and genetic linkage inference on the gradual admixture population Yi Chuan Xue Bao 33 2006 12 18
    • (2006) Yi Chuan Xue Bao , vol.33 , pp. 12-18
    • Guo, W.1    Fung, W.K.2
  • 20
    • 41649083148 scopus 로고    scopus 로고
    • Analysis of genomic admixture in Uyghur and its implication in mapping strategy
    • S. Xu, W. Huang, J. Qian, and L. Jin Analysis of genomic admixture in Uyghur and its implication in mapping strategy Am. J. Hum. Genet. 82 2008 883 894
    • (2008) Am. J. Hum. Genet. , vol.82 , pp. 883-894
    • Xu, S.1    Huang, W.2    Qian, J.3    Jin, L.4
  • 21
    • 51149090386 scopus 로고    scopus 로고
    • A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery
    • S. Xu, and L. Jin A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery Am. J. Hum. Genet. 83 2008 322 336
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 322-336
    • Xu, S.1    Jin, L.2
  • 22
    • 80053491260 scopus 로고    scopus 로고
    • Chromosome-wide haplotype sharing: A measure integrating recombination information to reconstruct the phylogeny of human populations
    • S. Xu, and L. Jin Chromosome-wide haplotype sharing: a measure integrating recombination information to reconstruct the phylogeny of human populations Ann. Hum. Genet. 75 2011 694 706
    • (2011) Ann. Hum. Genet. , vol.75 , pp. 694-706
    • Xu, S.1    Jin, L.2
  • 23
    • 3042616060 scopus 로고    scopus 로고
    • Putative ancestral origins of chromosomal segments in individual african americans: Implications for admixture mapping
    • M.F. Seldin, T. Morii, H.E. Collins-Schramm, B. Chima, R. Kittles, L.A. Criswell, and H. Li Putative ancestral origins of chromosomal segments in individual african americans: implications for admixture mapping Genome Res. 14 2004 1076 1084
    • (2004) Genome Res. , vol.14 , pp. 1076-1084
    • Seldin, M.F.1    Morii, T.2    Collins-Schramm, H.E.3    Chima, B.4    Kittles, R.5    Criswell, L.A.6    Li, H.7
  • 25
    • 33745228973 scopus 로고    scopus 로고
    • Reconstructing genetic ancestry blocks in admixed individuals
    • H. Tang, M. Coram, P. Wang, X. Zhu, and N. Risch Reconstructing genetic ancestry blocks in admixed individuals Am. J. Hum. Genet. 79 2006 1 12
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 1-12
    • Tang, H.1    Coram, M.2    Wang, P.3    Zhu, X.4    Risch, N.5
  • 26
    • 0041817568 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data: Linked loci and correlated allele frequencies
    • D. Falush, M. Stephens, and J.K. Pritchard Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies Genetics 164 2003 1567 1587
    • (2003) Genetics , vol.164 , pp. 1567-1587
    • Falush, D.1    Stephens, M.2    Pritchard, J.K.3
  • 30
    • 0001771498 scopus 로고
    • Evolution in Mendelian populations
    • S. Wright Evolution in Mendelian populations Genetics 16 1931 97 159
    • (1931) Genetics , vol.16 , pp. 97-159
    • Wright, S.1
  • 31
    • 33846006923 scopus 로고    scopus 로고
    • Population structure and eigenanalysis
    • N. Patterson, A.L. Price, and D. Reich Population structure and eigenanalysis PLoS Genet. 2 2006 e190
    • (2006) PLoS Genet. , vol.2 , pp. 190
    • Patterson, N.1    Price, A.L.2    Reich, D.3
  • 32
    • 17644402806 scopus 로고    scopus 로고
    • Estimation of individual admixture: Analytical and study design considerations
    • H. Tang, J. Peng, P. Wang, and N.J. Risch Estimation of individual admixture: analytical and study design considerations Genet. Epidemiol. 28 2005 289 301
    • (2005) Genet. Epidemiol. , vol.28 , pp. 289-301
    • Tang, H.1    Peng, J.2    Wang, P.3    Risch, N.J.4
  • 33
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • J.K. Pritchard, M. Stephens, and P. Donnelly Inference of population structure using multilocus genotype data Genetics 155 2000 945 959
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 34
    • 84863265109 scopus 로고    scopus 로고
    • Genome-wide detection of natural selection in African Americans pre- and post-admixture
    • W. Jin, S. Xu, H. Wang, Y. Yu, Y. Shen, B. Wu, and L. Jin Genome-wide detection of natural selection in African Americans pre- and post-admixture Genome Res. 22 2012 519 527
    • (2012) Genome Res. , vol.22 , pp. 519-527
    • Jin, W.1    Xu, S.2    Wang, H.3    Yu, Y.4    Shen, Y.5    Wu, B.6    Jin, L.7
  • 35
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • P. Scheet, and M. Stephens A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase Am. J. Hum. Genet. 78 2006 629 644
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 37
    • 0030305457 scopus 로고    scopus 로고
    • R: A language for data analysis and graphics
    • R. Ihaka, and R. Gentleman R: A language for data analysis and graphics J. Comput. Graph. Statist. 5 1996 299 314
    • (1996) J. Comput. Graph. Statist. , vol.5 , pp. 299-314
    • Ihaka, R.1    Gentleman, R.2
  • 38
    • 34247990255 scopus 로고
    • On Kolmogorov-Smirnov test for normality with mean and variance unknown
    • H.W. Lilliefors On Kolmogorov-Smirnov test for normality with mean and variance unknown J. Am. Stat. Assoc. 62 1967 399 402
    • (1967) J. Am. Stat. Assoc. , vol.62 , pp. 399-402
    • Lilliefors, H.W.1
  • 39
    • 85163204848 scopus 로고
    • The distribution of a product from several sources to numerous localities
    • F.L. Hitchcock The distribution of a product from several sources to numerous localities J. Math. Phys. 20 1941 224 230
    • (1941) J. Math. Phys. , vol.20 , pp. 224-230
    • Hitchcock, F.L.1
  • 40
    • 0034313871 scopus 로고    scopus 로고
    • The earth mover's distance as a metric for image retrieval
    • Y. Rubner, C. Tomasi, and L.J. Guibas The earth mover's distance as a metric for image retrieval Int. J. Comput. Vis. 40 2000 99 121
    • (2000) Int. J. Comput. Vis. , vol.40 , pp. 99-121
    • Rubner, Y.1    Tomasi, C.2    Guibas, L.J.3
  • 44
    • 0038124411 scopus 로고    scopus 로고
    • Maximum-likelihood estimation of admixture proportions from genetic data
    • J. Wang Maximum-likelihood estimation of admixture proportions from genetic data Genetics 164 2003 747 765
    • (2003) Genetics , vol.164 , pp. 747-765
    • Wang, J.1
  • 46
    • 33749034726 scopus 로고    scopus 로고
    • A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping
    • C. Tian, D.A. Hinds, R. Shigeta, R. Kittles, D.G. Ballinger, and M.F. Seldin A genomewide single-nucleotide-polymorphism panel with high ancestry information for African American admixture mapping Am. J. Hum. Genet. 79 2006 640 649
    • (2006) Am. J. Hum. Genet. , vol.79 , pp. 640-649
    • Tian, C.1    Hinds, D.A.2    Shigeta, R.3    Kittles, R.4    Ballinger, D.G.5    Seldin, M.F.6
  • 52
    • 0036143220 scopus 로고    scopus 로고
    • Adjusting for population structure in admixed populations
    • C.L. Pfaff, R.A. Kittles, and M.D. Shriver Adjusting for population structure in admixed populations Genet. Epidemiol. 22 2002 196 201
    • (2002) Genet. Epidemiol. , vol.22 , pp. 196-201
    • Pfaff, C.L.1    Kittles, R.A.2    Shriver, M.D.3
  • 53
    • 22944467804 scopus 로고    scopus 로고
    • Mapping by admixture linkage disequilibrium: Advances, limitations and guidelines
    • M.W. Smith, and S.J. O'Brien Mapping by admixture linkage disequilibrium: advances, limitations and guidelines Nat. Rev. Genet. 6 2005 623 632
    • (2005) Nat. Rev. Genet. , vol.6 , pp. 623-632
    • Smith, M.W.1    O'Brien, S.J.2
  • 54
    • 70349931488 scopus 로고    scopus 로고
    • Haplotype-sharing analysis showing Uyghurs are unlikely genetic donors
    • S. Xu, W. Jin, and L. Jin Haplotype-sharing analysis showing Uyghurs are unlikely genetic donors Mol. Biol. Evol. 26 2009 2197 2206
    • (2009) Mol. Biol. Evol. , vol.26 , pp. 2197-2206
    • Xu, S.1    Jin, W.2    Jin, L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.