Genetic control of translesion synthesis on leading and lagging DNA strands in plasmids derived from epstein-barr virus in human cells

mBio

Volumn 3, Issue 5, 2012, Pages

  Yoon, Jung Hoon ^a   Prakash, Satya ^a   Prakash, Louise ^a  

^a University of Texas Medical Branch School of Medicine   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

DNA DIRECTED DNA POLYMERASE;

ARTICLE; CELL LINE; DNA REPAIR; DNA REPLICATION; DNA REPLICATION ORIGIN; EPSTEIN BARR VIRUS; HUMAN; METABOLISM; PHYSIOLOGY; PLASMID; VIRUS REPLICATION;

CELL LINE; DNA REPAIR; DNA REPLICATION; DNA-DIRECTED DNA POLYMERASE; HERPESVIRUS 4, HUMAN; HUMANS; PLASMIDS; REPLICATION ORIGIN; VIRUS REPLICATION;

EID: 84868355599     PISSN: 21612129     EISSN: 21507511     Source Type: Journal    
DOI: 10.1128/mBio.00271-12     Document Type: Article

References (38)

1. Lindner SE, Sugden B. 2007. The plasmid replicon of Epstein-Barr virus: mechanistic insights into efficient, licensed, extrachromosomal replication in human cells. Plasmid 58:1-12.
2. Yates J, Warren N, Reisman D, Sugden B. 1984. A cis-acting element from the Epstein-Barr viral genome that permits stable replication of re-combinant plasmids inlatently infected cells. Proc. Natl. Acad. Sci.U.S. A. 81:3806-3810.
3. Yates JL, Warren N, Sugden B. 1985. Stable replication of plasmids derived from Epstein-Barr virus in various mammalian cells. Nature 313: 812-815.
4. Gahn TA, Schildkraut CL. 1989. The Epstein-Barr virus origin of plasmid replication, oriP, contains both the initiation and termination sites of DNA replication. Cell 58:527-535.
5. Harrison S, Fisenne K, Hearing J. 1994. Sequence requirements of the Epstein-Barr virus latent origin of DNA replication. J. Virol. 68: 1913-1925.
6. Shirakata M, Hirai K. 1998. Identification of minimal oriP of Epstein-Barr virus required for DNA replication. J. Biochem. 123:175-181.
7. Yates JL, Camiolo SM, Bashaw JM. 2000. The minimal replicator of Epstein-Barr virus oriP. J. Virol. 74:4512-4522.
8. Frappier L, O'Donnell M. 1991. Overproduction, purification, and characterization of EBNA1, the origin binding protein of Epstein-Barr virus. J. Biol. Chem. 266:7819-7826.
9. Middleton T, Sugden B. 1992. EBNA1 can link the enhancer element to the initiator element of the Epstein-Barr virus plasmid origin of DNA replication. J. Virol. 66:489-495.
10. Blow JJ, Laskey RA. 1988. A role for the nuclear envelope in controlling DNA replication within the cell cycle. Nature 332:546-548.
11. Yates JL, Guan N. 1991. Epstein-Barr virus-derived plasmids replicate only once per cell cycle and are not amplified after entry into cells. J. Virol. 65:483-488.
12. Dhar SK, et al. 2001. Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin. Cell 106:287-296.
13. Ritzi M, et al. 2003. Complex protein-DNA dynamics at the latent origin of DNA replication of Epstein-Barr virus. J. Cell Sci. 116:3971-3984.
14. Schepers A, et al. 2001. Human origin recognition complex binds to the region of the latent origin of DNA replication of Epstein-Barr virus. EMBO J. 20:4588-4602.
15. Wang J, Lindner SE, Leight ER, Sugden B. 2006. Essential elements of a licensed, mammalian plasmid origin of DNA synthesis. Mol. Cell. Biol. 26:1124-1134.
16. Fanning E, Zhao K. 2009. SV40 DNA replication: from the A gene to a nanomachine. Virology 384:352-359.
17. Bullock PA, Seo YS, Hurwitz J. 1991. Initiation of simian virus 40 DNA synthesis in vitro. Mol. Cell. Biol. 11: 2350 -2361.
18. Danna KJ, Nathans D. 1972. Bidirectional replication of simian virus 40 DNA. Proc. Natl. Acad. Sci. U. S. A. 69:3097-3100.
19. Fareed GC, Garon GF, Salzman NP. 1972. Origin and direction of simian virus 40 deoxyribonucleic acid replication. J. Virol. 10:484-491.
20. Li JJ, Kelly TJ. 1985. Simian virus 40 DNA replication in vitro: specificity of initiation and evidence for bidirectional replication. Mol. Cell. Biol. 5:1238-1246.
21. Borowiec JA, Dean FB, Bullock PA, Hurwitz J. 1990. Binding and unwinding-how T antigen engages the SV40 origin of DNA replication. Cell 60:181-184.
22. Dodson M, Dean FB, Bullock P, Echols H, Hurwitz J. 1987. Unwinding of duplex DNA from the SV40 origin of replication by T antigen. Science 238:964-967.
23. Mastrangelo IA, et al. 1989. ATP-dependent assembly of double hexam-ers of SV40 T antigen at the viral origin of DNA replication. Nature 338: 658-662.
24. Matsumoto T, Eki T, Hurwitz J. 1990. Studies on the initiation and elongation reactions in the simian virus 40 DNA replication system. Proc. Natl. Acad. Sci. U. S. A. 87:9712-9716.
25. Tsurimoto T, Melendy T, Stillman B. 1990. Sequential initiation of lagging and leading strand synthesis by two different polymerase complexes at the SV40 DNA replication origin. Nature 346:534-539.
26. Tsurimoto T, Stillman B. 1990. Functions of replication factor C and proliferating-cell nuclear antigen: functional similarity of DNA polymer-ase accessory proteins from human cells and bacteriophage T4. Proc. Natl. Acad. Sci. U. S. A. 87:1023-1027.
27. Weinberg DH, et al. 1990. Reconstitution of simian virus 40 DNA replication with purified proteins. Proc. Natl. Acad. Sci. U. S.A.87:8692-8696.
28. Waga S, Stillman B. 1998. The DNA replication fork in eukaryotic cells. Annu. Rev. Biochem. 67:721-751.
29. Zlotkin T, et al. 1996. DNA polymerase epsilon may be dispensable for SV40 but not cellular DNA replication. EMBO J. 15:2298-2305.
30. Cordeiro-Stone M, Makhov AM, Zaritskaya LS, Griffith JD. 1999. Analysis of DNA replication forks encountering a pyrimidine dimer in the template to the leading strand. J. Mol. Biol. 289:1207-1218.
31. Cordeiro-Stone M, Zaritskaya LS, Price LK, Kaufmann WK. 1997. Replication fork bypass of a pyrimidine dimer blocking leading strand DNA synthesis. J. Biol. Chem. 272:13945-13954.
32. Nikolaishvili-Feinberg N, Cordeiro-Stone M. 2001. Bypass replication in vitro of UV-induced photoproducts blocking leading or lagging strand synthesis. Biochemistry 40:15215-15223.
33. Svoboda DL, Vos J-M. 1995. Differential replication of a single, UV-induced lesion in the leading or lagging strand by a human cell extract: fork uncoupling or gap formation. Proc. Natl. Acad. Sci. U. S. A. 92: 11975-11979.
34. Yoon J-H, Bhatia G, Prakash S, Prakash L. 2010. Error-free replicative bypass of thymine glycol by the combined action of DNA polymerases k and £in human cells. Proc. Natl. Acad. Sci. U. S. A. 107:14116-14122.
35. Yoon JH, Prakash L, Prakash S. 2010. Error-free replicative bypass of (6-4) photoproducts by DNA polymerase £ in mouse and human cells. Genes Dev. 24:123-128.
36. Yoon JH, Prakash L, Prakash S. 2009. Highly error-free role of DNA polymerase r\ in the replicative bypass of UV induced pyrimidine dimers in mouse and human cells. Proc. Natl. Acad. Sci. U. S. A. 106: 18219-18224.
37. McElhinny SA, et al. 2008. Division of labor at the eukaryotic replication fork. Mol. Cell 30:137-144.
38. Pursell ZF, Isoz I, Lundström EB, Johansson E, Kunkel TA. 2007. Yeast DNA polymerase 8 participates in leading-strand DNA replication. Science 317:127-130.