A Characterization of the Oral Microbiome in Allogeneic Stem Cell Transplant Patients

PLoS ONE

Volumn 7, Issue 10, 2012, Pages

  Ames, Nancy J ^a   Sulima, Pawel ^b,f   Ngo, Thoi ^a,g   Barb, Jennifer ^c   Munson, Peter J ^c   Paster, Bruce J ^d,e   Hart, Thomas C ^b,h  

^a NATIONAL INSTITUTES OF HEALTH   (United States)

^b NATIONAL INSTITUTE OF DENTAL AND CRANIOFACIAL RESEARCH   (United States)

^c NATIONAL INSTITUTES OF HEALTH   (United States)

^d FORSYTH INSTITUTE   (United States)

^e HARVARD SCHOOL OF DENTAL MEDICINE   (United States)

^f Discovery Logic/Thomson Reuters   (United States)

^g NEW YORK MEDICAL COLLEGE   (United States)

^h UNIVERSITY OF ILLINOIS AT CHICAGO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA;

ADULT; ALLOGENEIC STEM CELL TRANSPLANTATION; ARTICLE; CAMPYLOBACTER; CLINICAL ARTICLE; CLUSTER ANALYSIS; CONTROLLED STUDY; ENGRAFTMENT; FEMALE; GEMELLA; GRANULICATELLA; HUMAN; MALE; MICROARRAY ANALYSIS; MICROBIAL COMMUNITY; MOUTH FLORA; NEUTROPENIA; NEUTROPHIL COUNT; NONHUMAN; PRINCIPAL COMPONENT ANALYSIS; RESPIRATORY TRACT DISEASE; RESPIRATORY TRACT INFECTION; STREPTOCOCCUS; VEILLONELLA;

ADULT; BACTERIA; CLUSTER ANALYSIS; FEMALE; GENE EXPRESSION PROFILING; HUMANS; MALE; MICROBIOTA; MIDDLE AGED; MOUTH; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PRINCIPAL COMPONENT ANALYSIS; RESPIRATORY SYSTEM; RNA, RIBOSOMAL, 16S; STEM CELL TRANSPLANTATION; TIME FACTORS; TRANSPLANTATION, HOMOLOGOUS;

BACTERIA (MICROORGANISMS); GEMELLA; GRANULICATELLA; STREPTOCOCCUS; VEILLONELLA;

EID: 84868108288     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0047628     Document Type: Article

References (46)

1. Xie G, Chain PS, Lo CC, Liu KL, Gans J, et al. (2010) Community and gene composition of a human dental plaque microbiota obtained by metagenomic sequencing. Mol Oral Microbiol 25: 391-405.
2. Sumi Y, Miura H, Michiwaki Y, Nagaosa S, Nagaya M, (2007) Colonization of dental plaque by respiratory pathogens in dependent elderly. Arch Gerontol Geriatr 44: 119-124.
3. Paster BJ, Olsen I, Aas JA, Dewhirst FE, (2006) The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000 42: 80-87.
4. Fourrier F, Dubois D, Pronnier P, Herbecq P, Leroy O, et al. (2005) Effect of gingival and dental plaque antiseptic decontamination on nosocomial infections acquired in the intensive care unit: a double-blind placebo-controlled multicenter study. Crit Care Med 33: 1728-1735.
5. Segata N, Haake SK, Mannon P, Lemon KP, Waldron L, et al. (2012) Composition of the adult digestive tract bacterial microbiome based on seven mouth surfaces, tonsils, throat and stool samples. Genome Biol 13: R42.
6. Belda-Ferre P, Alcaraz LD, Cabrera-Rubio R, Romero H, Simon-Soro A, et al. (2012) The oral metagenome in health and disease. ISME J 6: 46-56.
7. Daly A, McAfee S, Dey B, Colby C, Schulte L, et al. (2003) Nonmyeloablative bone marrow transplantation: Infectious complications in 65 recipients of HLA-identical and mismatched transplants. Biol Blood Marrow Transplant 9: 373-382.
8. Einsele H, Bertz H, Beyer J, Kiehl MG, Runde V, et al. (2003) Infectious complications after allogeneic stem cell transplantation: epidemiology and interventional therapy strategies-guidelines of the Infectious Diseases Working Party (AGIHO) of the German Society of Hematology and Oncology (DGHO). Ann Hematol 82 (Suppl 2):: S175-185.
9. Parody R, Martino R, Rovira M, Vazquez L, Vazquez MJ, et al. (2006) Severe infections after unrelated donor allogeneic hematopoietic stem cell transplantation in adults: comparison of cord blood transplantation with peripheral blood and bone marrow transplantation. Biol Blood Marrow Transplant 12: 734-748.
10. Remberger M, Ringden O, Blau IW, Ottinger H, Kremens B, et al. (2001) No difference in graft-versus-host disease, relapse, and survival comparing peripheral stem cells to bone marrow using unrelated donors. Blood 98: 1739-1745.
11. Savani BN, Montero A, Wu C, Nlonda N, Read E, et al. (2005) Prediction and prevention of transplant-related mortality from pulmonary causes after total body irradiation and allogeneic stem cell transplantation. Biol Blood Marrow Transplant 11: 223-230.
12. Gooley TA, Chien JW, Pergam SA, Hingorani S, Sorror ML, et al. (2010) Reduced mortality after allogeneic hematopoietic-cell transplantation. N Engl J Med 363: 2091-2101.
13. Landry RG, Jean M, (2002) Periodontal Screening and Recording (PSR) Index: precursors, utility and limitations in a clinical setting. Int Dent J 52: 35-40.
14. Dye B, Tan S, Smith V, Lewis B, Barker L, et al. (2007) Trends in oral health status: United States 1994-1998 and 1999-2004; National Center for Health Statistics Vital Health Stat 11 (248) Bethesda. pp 45.
15. Dewhirst FE, Chen T, Izard J, Paster BJ, Tanner AC, et al. (2010) The human oral microbiome. J Bacteriol 192: 5002-5017.
16. Lazarevic V, Whiteson K, Hernandez D, Francois P, Schrenzel J, (2010) Study of inter- and intra-individual variations in the salivary microbiota. BMC Genomics 11: 523.
17. Zaura E, Keijser BJ, Huse SM, Crielaard W, (2009) Defining the healthy "core microbiome" of oral microbial communities. BMC Microbiol 9: 259.
18. Huse SM, Ye Y, Zhou Y, Fodor AA, (2012) A Core Human Microbiome as Viewed through 16S rRNA Sequence Clusters. PLoS One 7: 6 Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0034242. Accessed 15 August 2012.
19. Rajilic-Stojanovic M, Maathuis A, Heilig HG, Venema K, de Vos WM, et al. (2010) Evaluating the microbial diversity of an in vitro model of the human large intestine by phylogenetic microarray analysis. Microbiology 156: 3270-3281.
20. Sapkota AR, Berger S, Vogel TM, (2010) Human pathogens abundant in the bacterial metagenome of cigarettes. Environ Health Perspect 118: 351-356.
21. Wentzensen N, Wilson LE, Wheeler CM, Carreon JD, Gravitt PE, et al. (2010) Hierarchical clustering of human papilloma virus genotype patterns in the ASCUS-LSIL triage study. Cancer Res 70: 8578-8586.
22. Kong HH, Oh J, Deming C, Conlan S, Grice EA, et al. (2012) Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis. Genome Res 22: 850-859.
23. De La Cochetiere MF, Durand T, Lalande V, Petit JC, Potel G, et al. (2008) Effect of antibiotic therapy on human fecal microbiota and the relation to the development of Clostridium difficile. Microb Ecol 56: 395-402.
24. Dethlefsen L, Relman DA, (2011) Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation. Proc Natl Acad Sci U S A 108 (Suppl 1):: 4554-4561.
25. Bahrani-Mougeot FK, Paster BJ, Coleman S, Barbuto S, Brennan MT, et al. (2007) Molecular analysis of oral and respiratory bacterial species associated with ventilator-associated pneumonia. J Clin Microbiol 45: 1588-1593.
26. Didilescu AC, Skaug N, Marica C, Didilescu C, (2005) Respiratory pathogens in dental plaque of hospitalized patients with chronic lung diseases. Clin Oral Investig 9: 141-147.
27. El-Solh AA, Pietrantoni C, Bhat A, Okada M, Zambon J, et al. (2004) Colonization of dental plaques: a reservoir of respiratory pathogens for hospital-acquired pneumonia in institutionalized elders. Chest 126: 1575-1582.
28. Fourrier F, Duvivier B, Boutigny H, Roussel-Delvallez M, Chopin C, (1998) Colonization of dental plaque: a source of nosocomial infections in intensive care unit patients. Crit Care Med 26: 301-308.
29. Heo SM, Haase EM, Lesse AJ, Gill SR, Scannapieco FA, (2008) Genetic relationships between respiratory pathogens isolated from dental plaque and bronchoalveolar lavage fluid from patients in the intensive care unit undergoing mechanical ventilation. Clin Infect Dis 47: 1562-1570.
30. Scannapieco FA, Stewart EM, Mylotte JM, (1992) Colonization of dental plaque by respiratory pathogens in medical intensive care patients. Crit Care Med 20: 740-745.
31. Jenq RR, Ubeda C, Taur Y, Menezes CC, Khanin R, et al. (2012) Regulation of intestinal inflammation by microbiota following allogeneic bone marrow transplantation. J Exp Med 209: 903-911.
32. Human Microbe Identification Microarray (HOMIM) (2012) Cambridge, Massachusetts: Forsyth Institute. Available: http://mim.forsyth.org/contact.html. Accessed: 12 June 2012.
33. Ahn J, Yang L, Paster BJ, Ganly I, Morris L, et al. (2011) Oral microbiome profiles: 16S rRNA pyrosequencing and microarray assay comparison. PLoS One 6: 7 Available: http://www.plosone.org/article/info%3Adoi%2F10.1371%2Fjournal.pone.0022788. Acccessed: 20 April 2012.
34. Knaus WA, Draper EA, Wagner DP, Zimmerman JE, (1985) APACHE II: a severity of disease classification system. Crit Care Med 13: 818-829.
35. Klein H, Palmer CE, Knutson JW, (1938) Studies on dental stauts. I. Dental status and dental needs of elementary school children. Public Health Reports 53: 751.
36. Beck S, (1979) Impact of a systematic oral care protocol on stomatitis after chemotherapy. Cancer Nurs 2: 185-199.
37. Sillness P, Loe, (1964) Peridontal Disease in Pregnancy Acta Odentologica Scandunavia. 22: 121-138.
38. World Health Organization (1997) Handbook for reporting results of cancer treatment. pp. 15-22.
39. Goker H, Haznedaroglu IC, Chao NJ, (2001) Acute graft-vs-host disease: pathobiology and management. Exp Hematol 29: 259-277.
40. Wolff A, Begleiter A, Moskona D, (1997) A novel system of human submandibular/sublingual saliva collection. J Dent Res 76: 1782-1786.
41. Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE, (2005) Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 43: 5721-5732.
42. Mager DL, Ximenez-Fyvie LA, Haffajee AD, Socransky SS, (2003) Distribution of selected bacterial species on intraoral surfaces. J Clin Periodontol 30: 644-654.
43. Colombo AP, Boches SK, Cotton SL, Goodson JM, Kent R, et al. (2009) Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray. J Periodontol 80: 1421-1432.
44. Edgar R, Domrachev M, Lash AE, (2002) Gene Expression Omnibus: NCBI gene expression and hybridization array data repository. Nucleic Acids Res 30: 207-210.
45. Ward JH, (1963) Hierarchical Grouping to Optimize and Objective Function. Journal of the American Statistical Association 58: 236-244.
46. Covington LL, Breault LG, Hokett SD, (2003) The application of Periodontal Screeing and Recording (PSR) in a military population. J Contemp Dent Prac 4: 36-51.