Comparisons of subgingival microbial profiles of refractory periodontitis, severe periodontitis, and periodontal health using the human oral microbe identification microarray

Journal of Periodontology

Volumn 80, Issue 9, 2009, Pages 1421-1432

  Colombo, Ana Paula V ^a   Boches, Susan K ^b   Cotton, Sean L ^b   Goodson, J Max ^b   Kent, Ralph ^b   Haffajee, Anne D ^b   Socransky, Sigmund S ^b   Hastunk, Hatice ^c   Van Dyke, Thomas E ^c   Dewhirst, Floyd ^a   Paster, Bruce J ^a  

^a FEDERAL UNIVERSITY OF RIO DE JANEIRO   (Brazil)

^b FORSYTH INSTITUTE   (United States)

^c BOSTON UNIVERSITY   (United States)

Author keywords

Pathogen; Periodontitis; Subgingival; Therapy

Indexed keywords

AMOXICILLIN; ANTIINFECTIVE AGENT; METRONIDAZOLE;

ADULT; ARTICLE; BACTERIUM; BACTEROIDES; BACTEROIDETES; CAMPYLOBACTER; CHRONIC PERIODONTITIS; CLASSIFICATION; COMPARATIVE STUDY; EIKENELLA CORRODENS; EUBACTERIUM; FEMALE; GRAM NEGATIVE BACTERIUM; GRAM POSITIVE BACTERIUM; HUMAN; MALE; MICROARRAY ANALYSIS; MICROBIOLOGY; MIDDLE AGED; PEPTOSTREPTOCOCCUS; PERIODONTITIS; PERIODONTIUM; PORPHYROMONAS GINGIVALIS; PREVENTIVE DENTISTRY; PREVOTELLA; PROTEOBACTERIA; SELENOMONAS; TOOTH PLAQUE; TREPONEMA;

ADULT; AMOXICILLIN; ANTI-BACTERIAL AGENTS; BACTERIA; BACTEROIDES; BACTEROIDETES; CAMPYLOBACTER; CHRONIC PERIODONTITIS; DENTAL PLAQUE; DENTAL SCALING; EIKENELLA CORRODENS; EUBACTERIUM; FEMALE; GRAM-NEGATIVE BACTERIA; GRAM-POSITIVE BACTERIA; HUMANS; MALE; METRONIDAZOLE; MICROARRAY ANALYSIS; MIDDLE AGED; PEPTOSTREPTOCOCCUS; PERIODONTITIS; PERIODONTIUM; PORPHYROMONAS GINGIVALIS; PREVOTELLA; PROTEOBACTERIA; ROOT PLANING; SELENOMONAS; TREPONEMA;

EID: 69949120119     PISSN: 00223492     EISSN: None     Source Type: Journal    
DOI: 10.1902/jop.2009.090185     Document Type: Article

References (60)

1. Choi BK, Paster BJ, Dewhirst FE, Göbel UB. Diversity of cultivable and uncultivable oral spirochetes from a patient with severe destructive periodontitis. Infect lmmun 1994;62:1889-1895.
2. Moore WEC, Moore LH. The bacteria of periodontal diseases. Periodontol 2000 1994;5:66-77.
3. Socransky SS, Haffajee AD, Cugini MA, Smith C, Kent RL Jr. Microbial complexes in subgingival plaque. J Clin Periodontol 1998;25:134-144.
4. Paster BJ, Boches SK, Galvin JL, et al. Bacterial diversity in human subgingival plaque. J Bacteriol 2001;183:3770-3783.
5. Paster BJ, Olsen I, Aas JA, Dewhirst FE. The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000 2006;42:80-87.
6. Aas JA, Paster BJ, Stokes LN, Olsen I, Dewhirst FE. Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 2005;43:5721-5732.
7. Mager DL, Ximenez-Fyvie LA, Haffajee AD, Socransky SS. Distribution of selected bacterial species on intra- oral surfaces. J Clin Periodontol 2003;30:644-654.
8. Socransky SS, Haffajee AD. Periodontal microbial ecology. Periodontol 2000 2005;38:135-187.
9. Kumar PS, Griffen AL, Barton JA, Paster BJ, Moeschberger ML, Leys EJ. New bacterial species associated with chronic periodontitis. J Dent Res 2003;82:338-344.
10. Haffajee AD, Teles RP, Socransky SS. The effect of periodontal therapy on the composition of the subgin-gival microbiota. Periodontol 2000 2006;42:219-258.
11. Teles RP, Haffajee AD, Socransky SS. Microbiological goals of periodontal therapy. Periodontol 2000 2006; 42:180-218.
12. Lindhe J, Westfelt E, Nyman S, Socransky SS, Haffajee AD. Long-term effect of surgical/non-surgical treatment of periodontal disease. J Clin Periodontol 1984;11:448-458.
13. Caffesse RG, Sweeney PL, Smith BA. Scaling and root planing with and without periodontal flap surgery. J Clin Periodontol 1986;13:205-210.
14. Hirschfeld L, Wasserman B. A long-term survey of tooth loss in 600 treated periodontal patients. J Periodontol 1978;49:225-237.
15. McFall WT Jr. Tooth loss in 100 treated patients with periodontal disease. A long-term study. J Periodontol 1982;53:539-549.
16. Adams DF. Diagnosis and treatment of refractory periodontitis. Curr Opin Dent 1992;2:33-38.
17. Flemmig TF. Periodontitis. Ann Periodontol 1999;4: 32-38.
18. Haffajee AD, Socransky SS, Dzink JL, Taubman MA, Ebersole JL. Clinical, microbiological and immunological features of subjects with refractory periodontal diseases. J Clin Periodontol 1988;15:390-398.
19. Choi JI, Nakagawa T, Yamada S, Takazoe I, Okuda K. Clinical, microbiological and immunological studies in recurrent periodontal disease. J Clin Periodontol 1990;17:426-434.
20. Collins JG, Offenbacher S, Arnold RR. Effects of a combination therapy to eliminate Porphyromonas gin-givalis in refractory periodontitis. J Periodontol1993;64: 998-1007.
21. Listgarten MA, Lai CH, Young V. Microbial composition and pattern of antibiotic resistance in subgingival microbial samples from patients with refractory periodontitis. J Periodontol 1993;64:155-161.
22. Magnusson I, Marks RG, Clark WB, Walker CB, Low SB, McArthur WP. Clinical, microbiological and immunological characteristics of subjects with "refractory" periodontal disease. J Clin Periodontol 1991;18: 291-299.
23. Colombo AP, Haffajee AD, Dewhirst FE, et al. Clinical and microbiological features of refractory periodontitis subjects. J Clin Periodontol 1998;25:169-180.
24. Colombo AP, Eftimiadi C, Haffajee AD, Cugini MA, Socransky SS. Serum IgG2 level, Gm(23) allotype and FcgammaRIIa and FcgammaRIIIb receptors in refractory periodontal disease. J Clin Periodontol 1998;25: 465-474.
25. Colombo AP, Sakellari D, Haffajee AD, Tanner A, Cugini MA, Socransky SS. Serum antibodies reacting with subgingival species in refractory periodontitis subjects. J Clin Periodontol 1998;25:596-604.
26. Colombo AP, Haffajee AD, Smith CM, Cugini MA, Socransky SS. Discrimination of refractory periodontitis subjects using clinical and laboratory parameters alone and in combination. J Clin Periodontol 1999;26:569-576.
27. Haffajee AD, Uzel NG, Arguello EI, Torresyap G, Guerrero DM, Socransky SS. Clinical and microbiological changes associated with the use of combined antimicrobial therapies to treat refractory peri- odontitis. J Clin Periodontol 2004;31:869-877.
28. Socransky SS, Smith C, Haffajee AD. Subgingival microbial profiles in "refractory" periodontal disease. J Clin Periodontol 2002;29:260-268.
29. Fine DH. Microbial identification and antibiotic sensitivity testing, an aid for patients refractory to periodontal disease. J Clin Periodontol 1994;21:98-106.
30. Preza D, Olsen I, Willumsen T, et al. Microarray analysis of the microflora of root caries in elderly. Eur J Clin Microbiol Infect Dis 2009;28:509-517.
31. Haffajee AD, Socransky SS, Goodson JM. Comparison of different data analyses for detecting changes in attachment level. J Clin Periodontol 1983;10:298-310.
32. Haffajee AD, Cugini MA, Dibart S, Smith C, Kent RL Jr., Socransky SS. The effect of SRP on the clinical and microbiological parameters of periodontal diseases. J Clin Periodontol 1997;24:324-334.
33. Human Oral Microbe Identification Microarray (HOMIM). Available at: http://mim.forsyth.org/homim. html. Accessed January 2009.
34. Human Oral Microbiome Database (HOMD) at The Forsyth Institute. Available at: http://www.homd.org/. Accessed January 2009.
35. Human Oral Microbe Identification Microarray (HOMIM). Available at: http://bioinformatics.forsyth. org/homim/. Accessed March-December 2008.
36. Darveau RP, Tanner A, Page RC. The microbial challenge in periodontitis. Periodontol 2000 1997;14:12-32.
37. Gerner-Smidt P, Keiser-Nielsen H, Dorsch M, et al. Lautropia mirabilis gen. nov., sp. nov., a Gram- negative motile coccus with unusual morphology isolated from the human mouth. Microbiology 1994;140: 1787-1797.
38. Wormser GP, Bottone EJ. Cardiobacterium hominis: Review of microbiologic and clinical features. Rev Infect Dis 1983;5:680-691.
39. Rossmann SN, Wilson PH, Hicks J, et al. Isolation of Lautropia mirabilis from oral cavities of human immunodeficiency virus-infected children. J Clin Microbiol 1998;36:1756-1760.
40. Das M, Badley AD, Cockerill FR, Steckelberg JM, Wilson WR. Infective endocarditis caused by HACEK microorganisms. Annu Rev Med 1997;48:25-33.
41. Winkel EG, van Winkelhoff AJ, Timmerman MF, Vangsted T, Van der Velden U. Effects of metronidazole in patients with refractory periodontitis associated with Bacteroides forsythus. J Clin Periodontol 1997;24:573-579.
42. Bergstrom J, Preber H. Tobacco use as a risk factor. J Periodontol 1994;65:545-550.
43. Darby IB, Hodge PJ, Riggio MP, Kinane DF. Clinical and microbiological effect of scaling and root planing in smoker and non-smoker chronic and aggressive periodontitis patients. J Clin Periodontol 2005;32:200-206.
44. Macfarlane GD, Herzberg M, Wolff L, Hardie N. Refractory periodontitis associated with abnormal poly-morphonuclear leukocyte phagocytosis and cigarette smoking. J Periodontol 1992;63:908-913.
45. Stoltenberg JL, Osborn JB, Pihlstrom BL, et al. Association between cigarette smoking, bacterial pathogens, and periodontal status. J Periodontol 1993;64: 1225-1230.
46. Boström L, Bergström J, Dahlén G, Linder LE. Smoking and subgingival microflora in periodontal disease. J Clin Periodontol 2001;28:212-219.
47. Zambon JJ, Grossi SG, Machtei EE, Ho AW, Dunford R, Genco RJ. Cigarette smoking increases the risk for subgingival infection with periodontal pathogens. J Periodontol 1996;67:1050-1054.
48. Kamma JJ, Nakou M, Baehni PC. Clinical and microbiological characteristics of smokers with early onset periodontitis. J Periodontal Res 1999;34:25-33.
49. Haffajee AD, Socransky SS. Relation of cigarette smoking to the subgingival microbiota. J Clin Peri odontol 2001;28:377-388.
50. Hutter G, Schlagenhauf U, Valenza G, et al. Molecular analysis of bacteria in periodontitis: Evaluation of clone libraries, novel phylotypes and putative pathogens. Microbiology 2003;149:67-75.
51. Arora U, Kaur S, Devi P. Ochrobactrum anthropi septicaemia. Indian J Med Microbiol 2008;26:81-83.
52. Han XY, Andrade RA. Brevundimonas diminuta infections and its resistance to fluoroquinolones. J Ant Chemoth 2005;55:853-859.
53. Colombo AP, Teles R, Torres MC, et al. Subgingival microbiota of Brazilian subjects with untreated chronic periodontitis. J Periodontol 2002;73:360-369.
54. Gonçalves Lde S, Soares Ferreira SM, Souza CO, Souto R, Colombo AP. Clinical and microbiological profiles of HIV-seropositive undergoing highly active antiretroviral therapy and HIV-seronegative Brazilians with chronic periodontitis. J Periodontol 2007;78: 87-96.
55. Slots J, Rams TF, Listgarten MA. Yeasts, enteric rods and pseudomonads in the subgingival flora of severe adult periodontitis. Oral Microbiol Immunol 1988;3: 47-52.
56. Souto R, Colombo AP. Prevalence of Enterococcus faecalis in subgingival biofilm and saliva of subjects with chronic periodontal infection. Arch Oral Biol 2008;53:155-160.
57. Siqueira JF Jr., Rôças IN. Pseudoramibacter alactolyticusin primary endodontic infections. J Endod 2003;29: 735-738.
58. Haraszthy VI, Gerber D, Clark B, et al. Characterization and prevalence of Solobacterium moorei associated with oral halitosis. J Breath Res [serial online]. March 2008;2(1):doc. 017002. Accessed January 16, 2009.
59. Siqueira JF Jr., Rôças IN. Polymerase chain reaction- based analysis of microorganisms associated with failed endodontic treatment. Oral Surg Oral Med Oral Pathol Oral Radiol Endod 2004;97:85-94.
60. Ferraro CT, Gornic C, Barbosa AS, Peixoto RJ, Colombo AP Detection of Dialister pneumosintes in the subgingival biofilm of subjects with periodontal disease. Anaerobe 2007;13:244-248.