-
1
-
-
27744573022
-
Defining the normal bacterial flora of the oral cavity
-
Aas, J.A., Paster, B.J., Stokes, L.N., Olsen, I. and Dewhirst, F.E. (2005) Defining the normal bacterial flora of the oral cavity. J Clin Microbiol 43: 5721-5732.
-
(2005)
J Clin Microbiol
, vol.43
, pp. 5721-5732
-
-
Aas, J.A.1
Paster, B.J.2
Stokes, L.N.3
Olsen, I.4
Dewhirst, F.E.5
-
2
-
-
42449131386
-
Bacteria of dental caries in primary and permanent teeth in children and young adults
-
Aas, J.A., Griffen, A.L., Dardis, S.R. et al. (2008) Bacteria of dental caries in primary and permanent teeth in children and young adults. J Clin Microbiol 46: 1407-1417.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 1407-1417
-
-
Aas, J.A.1
Griffen, A.L.2
Dardis, S.R.3
-
3
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S.F., Gish, W., Miller, W., Myers, E.W. and Lipman, D.J. (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
Altschul, S.F., Madden, T.L., Schaffer, A.A. et al. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25: 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
-
5
-
-
40549120596
-
The RAST server: rapid annotations using subsystems technology
-
Aziz, R.K., Bartels, D., Best, A.A. et al. (2008) The RAST server: rapid annotations using subsystems technology. BMC Genomics 9: 75.
-
(2008)
BMC Genomics
, vol.9
, pp. 75
-
-
Aziz, R.K.1
Bartels, D.2
Best, A.A.3
-
6
-
-
0036197764
-
Molecular analysis of bacterial species associated with childhood caries
-
Becker, M.R., Paster, B.J., Leys, E.J. et al. (2002) Molecular analysis of bacterial species associated with childhood caries. J Clin Microbiol 40: 1001-1009.
-
(2002)
J Clin Microbiol
, vol.40
, pp. 1001-1009
-
-
Becker, M.R.1
Paster, B.J.2
Leys, E.J.3
-
7
-
-
0035751189
-
Bioinformatics issues for automating the annotation of genomic sequences
-
Carter, K., Oka, A., Tamiya, G. and Bellgard, M.I. (2001) Bioinformatics issues for automating the annotation of genomic sequences. Genome Inform 12: 204-211.
-
(2001)
Genome Inform
, vol.12
, pp. 204-211
-
-
Carter, K.1
Oka, A.2
Tamiya, G.3
Bellgard, M.I.4
-
8
-
-
0036137277
-
DNA sequence quality trimming and vector removal
-
Chou, H.H. and Holmes, M.H. (2001) DNA sequence quality trimming and vector removal. Bioinformatics 17: 1093-1104.
-
(2001)
Bioinformatics
, vol.17
, pp. 1093-1104
-
-
Chou, H.H.1
Holmes, M.H.2
-
9
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill, S.R., Pop, M., Deboy, R.T. et al. (2006) Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359.
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
-
10
-
-
20444447524
-
Microbiology of periodontal diseases: introduction
-
Haffajee, A.D. and Socransky, S.S. (2005) Microbiology of periodontal diseases: introduction. Periodontol 2000 38: 9-12.
-
(2005)
Periodontol 2000
, vol.38
, pp. 9-12
-
-
Haffajee, A.D.1
Socransky, S.S.2
-
11
-
-
33747827173
-
Introduction to microbial aspects of periodontal biofilm communities, development and treatment
-
Haffajee, A.D. and Socransky, S.S. (2006) Introduction to microbial aspects of periodontal biofilm communities, development and treatment. Periodontol 2000 42: 7-12.
-
(2006)
Periodontol 2000
, vol.42
, pp. 7-12
-
-
Haffajee, A.D.1
Socransky, S.S.2
-
12
-
-
33847702910
-
MEGAN analysis of metagenomic data
-
Huson, D.H., Auch, A.F., Qi, J. and Schuster, S.C. (2007) MEGAN analysis of metagenomic data. Genome Res 17: 377-386.
-
(2007)
Genome Res
, vol.17
, pp. 377-386
-
-
Huson, D.H.1
Auch, A.F.2
Qi, J.3
Schuster, S.C.4
-
13
-
-
58149218590
-
Pyrosequencing analysis of the oral microflora of healthy adults
-
Keijser, B.J., Zaura, E., Huse, S.M. et al. (2008) Pyrosequencing analysis of the oral microflora of healthy adults. J Dent Res 87: 1016-1020.
-
(2008)
J Dent Res
, vol.87
, pp. 1016-1020
-
-
Keijser, B.J.1
Zaura, E.2
Huse, S.M.3
-
14
-
-
0033456272
-
Bacterial diversity within the human subgingival crevice
-
Kroes, I., Lepp, P.W. and Relman, D.A. (1999) Bacterial diversity within the human subgingival crevice. Proc Natl Acad Sci U S A 96: 14547-14552.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, pp. 14547-14552
-
-
Kroes, I.1
Lepp, P.W.2
Relman, D.A.3
-
15
-
-
0038050412
-
New bacterial species associated with chronic periodontitis
-
Kumar, P.S., Griffen, A.L., Barton, J.A., Paster, B.J., Moeschberger, M.L. and Leys, E.J. (2003) New bacterial species associated with chronic periodontitis. J Dent Res 82: 338-344.
-
(2003)
J Dent Res
, vol.82
, pp. 338-344
-
-
Kumar, P.S.1
Griffen, A.L.2
Barton, J.A.3
Paster, B.J.4
Moeschberger, M.L.5
Leys, E.J.6
-
16
-
-
2942538300
-
Versatile and open software for comparing large genomes
-
Kurtz, S., Phillippy, A., Delcher, A.L. et al. (2004) Versatile and open software for comparing large genomes. Genome Biol 5: R12.
-
(2004)
Genome Biol
, vol.5
-
-
Kurtz, S.1
Phillippy, A.2
Delcher, A.L.3
-
17
-
-
70449530747
-
Metagenomic study of the oral microbiota by Illumina high-throughput sequencing
-
Lazarevic, V., Whiteson, K., Huse, S. et al. (2009) Metagenomic study of the oral microbiota by Illumina high-throughput sequencing. J Microbiol Meth 79: 266-271.
-
(2009)
J Microbiol Meth
, vol.79
, pp. 266-271
-
-
Lazarevic, V.1
Whiteson, K.2
Huse, S.3
-
18
-
-
38549139537
-
IMG/M: a data management and analysis system for metagenomes
-
other authors
-
Markowitz, V.M., Ivanova, N.N. and Szeto, E. and other authors (2008) IMG/M: a data management and analysis system for metagenomes. Nucleic Acids Res 36: D534-D538.
-
(2008)
Nucleic Acids Res
, vol.36
-
-
Markowitz, V.M.1
Ivanova, N.N.2
Szeto, E.3
-
19
-
-
0028475512
-
Microbial ecology of dental plaque and its significance in health and disease
-
Marsh, P.D. (1994) Microbial ecology of dental plaque and its significance in health and disease. Adv Dent Res 8: 263-271.
-
(1994)
Adv Dent Res
, vol.8
, pp. 263-271
-
-
Marsh, P.D.1
-
20
-
-
39049181743
-
Dental diseases - are these examples of ecological catastrophes?
-
discussion 50-52.
-
Marsh, P.D. (2006) Dental diseases - are these examples of ecological catastrophes? Int J Dent Hyg 4(Suppl 1): 3-10; discussion 50-52.
-
(2006)
Int J Dent Hyg
, vol.4
, Issue.SUPPL 1
, pp. 3-10
-
-
Marsh, P.D.1
-
21
-
-
63849171250
-
Global diversity in the human salivary microbiome
-
Nasidze, I., Li, J., Quinque, D., Tang, K. and Stoneking, M. (2009) Global diversity in the human salivary microbiome. Genome Res 19: 636-643.
-
(2009)
Genome Res
, vol.19
, pp. 636-643
-
-
Nasidze, I.1
Li, J.2
Quinque, D.3
Tang, K.4
Stoneking, M.5
-
22
-
-
33750976398
-
MetaGene: prokaryotic gene finding from environmental genome shotgun sequences
-
Noguchi, H., Park, J. and Takagi, T. (2006) MetaGene: prokaryotic gene finding from environmental genome shotgun sequences. Nucleic Acids Res 34: 5623-5630.
-
(2006)
Nucleic Acids Res
, vol.34
, pp. 5623-5630
-
-
Noguchi, H.1
Park, J.2
Takagi, T.3
-
23
-
-
25644458211
-
The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes
-
Overbeek, R., Begley, T., Butler, R.M. et al. (2005) The subsystems approach to genome annotation and its use in the project to annotate 1000 genomes. Nucleic Acids Res 33: 5691-5702.
-
(2005)
Nucleic Acids Res
, vol.33
, pp. 5691-5702
-
-
Overbeek, R.1
Begley, T.2
Butler, R.M.3
-
24
-
-
0034992657
-
Bacterial diversity in human subgingival plaque
-
Paster, B.J., Boches, S.K., Galvin, J.L. et al. (2001) Bacterial diversity in human subgingival plaque. J Bacteriol 183: 3770-3783.
-
(2001)
J Bacteriol
, vol.183
, pp. 3770-3783
-
-
Paster, B.J.1
Boches, S.K.2
Galvin, J.L.3
-
25
-
-
33747853795
-
The breadth of bacterial diversity in the human periodontal pocket and other oral sites
-
Paster, B.J., Olsen, I., Aas, J.A. and Dewhirst, F.E. (2006) The breadth of bacterial diversity in the human periodontal pocket and other oral sites. Periodontol 2000 42: 80-87.
-
(2006)
Periodontol 2000
, vol.42
, pp. 80-87
-
-
Paster, B.J.1
Olsen, I.2
Aas, J.A.3
Dewhirst, F.E.4
-
26
-
-
45149134670
-
Bacterial profiles of root caries in elderly patients
-
Preza, D., Olsen, I., Aas, J.A., Willumsen, T., Grinde, B. and Paster, B.J. (2008) Bacterial profiles of root caries in elderly patients. J Clin Microbiol 46: 2015-2021.
-
(2008)
J Clin Microbiol
, vol.46
, pp. 2015-2021
-
-
Preza, D.1
Olsen, I.2
Aas, J.A.3
Willumsen, T.4
Grinde, B.5
Paster, B.J.6
-
27
-
-
33947238287
-
The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific
-
Rusch, D.B., Halpern, A.L., Sutton, G. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 5: e77.
-
(2007)
PLoS Biol
, vol.5
-
-
Rusch, D.B.1
Halpern, A.L.2
Sutton, G.3
-
29
-
-
0031989077
-
Microbial complexes in subgingival plaque
-
Socransky, S.S., Haffajee, A.D., Cugini, M.A., Smith, C. and Kent, R.L. Jr (1998) Microbial complexes in subgingival plaque. J Clin Periodontol 25: 134-144.
-
(1998)
J Clin Periodontol
, vol.25
, pp. 134-144
-
-
Socransky, S.S.1
Haffajee, A.D.2
Cugini, M.A.3
Smith, C.4
Kent Jr, R.L.5
-
30
-
-
69549086653
-
Functional characterization of the antibiotic resistance reservoir in the human microflora
-
Sommer, M.O., Dantas, G. and Church, G.M. (2009) Functional characterization of the antibiotic resistance reservoir in the human microflora. Science (New York, NY) 325: 1128-1131.
-
(2009)
Science (New York, NY)
, vol.325
, pp. 1128-1131
-
-
Sommer, M.O.1
Dantas, G.2
Church, G.M.3
-
31
-
-
33750403801
-
RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models
-
Stamatakis, A. (2006) RAxML-VI-HPC: maximum likelihood-based phylogenetic analyses with thousands of taxa and mixed models. Bioinformatics (Oxford, UK) 22: 2688-2690.
-
(2006)
Bioinformatics (Oxford, UK)
, vol.22
, pp. 2688-2690
-
-
Stamatakis, A.1
-
32
-
-
33644692952
-
Metagenomics: DNA sequencing of environmental samples
-
Tringe, S.G. and Rubin, E.M. (2005) Metagenomics: DNA sequencing of environmental samples. Nat Rev 6: 805-814.
-
(2005)
Nat Rev
, vol.6
, pp. 805-814
-
-
Tringe, S.G.1
Rubin, E.M.2
-
33
-
-
33845874101
-
An obesity-associated gut microbiome with increased capacity for energy harvest
-
Turnbaugh, P.J., Ley, R.E., Mahowald, M.A., Magrini, V., Mardis, E.R. and Gordon, J.I. (2006) An obesity-associated gut microbiome with increased capacity for energy harvest. Nature 444: 1027-1031.
-
(2006)
Nature
, vol.444
, pp. 1027-1031
-
-
Turnbaugh, P.J.1
Ley, R.E.2
Mahowald, M.A.3
Magrini, V.4
Mardis, E.R.5
Gordon, J.I.6
-
34
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu, M. and Eisen, J.A. (2008) A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9: R151.
-
(2008)
Genome Biol
, vol.9
-
-
Wu, M.1
Eisen, J.A.2
-
35
-
-
33947235074
-
The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families
-
Yooseph, S., Sutton, G., Rusch, D.B. et al. (2007) The Sorcerer II Global Ocean Sampling expedition: expanding the universe of protein families. PLoS Biol 5: e16.
-
(2007)
PLoS Biol
, vol.5
-
-
Yooseph, S.1
Sutton, G.2
Rusch, D.B.3
-
36
-
-
74949134895
-
Defining the healthy 'core microbiome' of oral microbial communities
-
Zaura, E., Keijser, B.J., Huse, S.M. and Crielaard, W. (2009) Defining the healthy 'core microbiome' of oral microbial communities. BMC Microbiol 9: 259.
-
(2009)
BMC Microbiol
, vol.9
, pp. 259
-
-
Zaura, E.1
Keijser, B.J.2
Huse, S.M.3
Crielaard, W.4
-
37
-
-
43149115851
-
Velvet: Algorithms for de novo short read assembly using de Bruijn graphs
-
Zerbino, D.R. and Birney, E. (2008) Velvet: Algorithms for de novo short read assembly using de Bruijn graphs. Genome Res 18: 821-829.
-
(2008)
Genome Res
, vol.18
, pp. 821-829
-
-
Zerbino, D.R.1
Birney, E.2
-
38
-
-
77955902981
-
Ab initio gene identification in metagenomic sequences
-
Zhu, W., Lomsadze, A. and Borodovsky, M. (2010) Ab initio gene identification in metagenomic sequences. Nucleic Acids Res 38: e132. Doi:
-
(2010)
Nucleic Acids Res
, vol.38
-
-
Zhu, W.1
Lomsadze, A.2
Borodovsky, M.3
|