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Volumn 28, Issue 21, 2012, Pages 2834-2842

Interaction-based feature selection and classification for high-dimensional biological data

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; ARTICLE; BREAST TUMOR; CLASSIFICATION; EPISTASIS; FEMALE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC SCREENING; GENETICS; HUMAN; METHODOLOGY; MULTIGENE FAMILY; STATISTICAL MODEL; TUMOR RECURRENCE;

EID: 84868034825     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/bts531     Document Type: Article
Times cited : (42)

References (37)
  • 2
    • 80052694732 scopus 로고    scopus 로고
    • Prognostic significance of carbonic anhydrase IX (CA-IX), endoglin (CD105) and 8-hydroxy-2-deoxyguanosine (8-OHdG) in breast cancer patients
    • Beketic-Oreskovic, L. et al. (2011) Prognostic significance of carbonic anhydrase IX (CA-IX), endoglin (CD105) and 8-hydroxy-2-deoxyguanosine (8-OHdG) in breast cancer patients. Pathol. Oncol. Res., 17, 593-33.
    • (2011) Pathol. Oncol. Res. , vol.17 , pp. 593-633
    • Beketic-Oreskovic, L.1
  • 3
    • 0001677717 scopus 로고
    • Controlling the false discovery rate-A practical and powerful approach to multiple testing
    • Benjamini, Y. and Hochberg, Y. (1995) Controlling the false discovery rate-A practical and powerful approach to multiple testing. JRSS B, 57, 289-33.
    • (1995) JRSS B , vol.57 , pp. 289-333
    • Benjamini, Y.1    Hochberg, Y.2
  • 4
    • 0035478854 scopus 로고    scopus 로고
    • Random forests
    • Breiman, L. (2001) Random forests. Mach. Learn., 45, 532.
    • (2001) Mach. Learn. , vol.45 , pp. 532
    • Breiman, L.1
  • 5
    • 3442894519 scopus 로고    scopus 로고
    • Epistasis: Too often neglected in complex trait studies
    • Carlborg, O. and Haley, C.S. (2004) Epistasis: too often neglected in complex trait studies. Nat. Rev. Genet., 5, 618-33.
    • (2004) Nat. Rev. Genet. , vol.5 , pp. 618-633
    • Carlborg, O.1    Haley, C.S.2
  • 6
    • 78650128077 scopus 로고    scopus 로고
    • Discovering influential variables: A method of partitions
    • Chernoff, H. et al. (2009) Discovering influential variables: a method of partitions. Ann. Appl. Stat., 3, 1335-33.
    • (2009) Ann. Appl. Stat. , vol.3 , pp. 1335-1343
    • Chernoff, H.1
  • 7
    • 67349166946 scopus 로고    scopus 로고
    • Detecting gene-gene interactions that underlies human diseases
    • Cordell, H.J. (2009) Detecting gene-gene interactions that underlies human diseases. Nat. Rev. Genet., 10, 392-33.
    • (2009) Nat. Rev. Genet. , vol.10 , pp. 392-433
    • Cordell, H.J.1
  • 8
    • 0013326060 scopus 로고    scopus 로고
    • Feature selection for classification
    • Dash, M. and Liu, H. (1997) Feature selection for classification. Intel. Data Anal., 1, 131-33.
    • (1997) Intel. Data Anal. , vol.1 , pp. 131-133
    • Dash, M.1    Liu, H.2
  • 10
    • 1542784653 scopus 로고    scopus 로고
    • Empirical Bayes analysis of a microarray experiment
    • Efron, B. et al. (2001) Empirical Bayes analysis of a microarray experiment. JASA, 96, 1151-33.
    • (2001) JASA , vol.96 , pp. 1151-2143
    • Efron, B.1
  • 11
    • 53849086824 scopus 로고    scopus 로고
    • Sure independence screening for ultrahigh dimensional feature space (with discussion)
    • Fan, J. and Lv, J. (2008) Sure independence screening for ultrahigh dimensional feature space (with discussion). J. R. Stat. Soc. Ser. B, 70, 849-33.
    • (2008) J. R. Stat. Soc. Ser. B , vol.70 , pp. 849-933
    • Fan, J.1    Lv, J.2
  • 12
    • 0031211090 scopus 로고    scopus 로고
    • A decision-theoretic generalization of online learning and an application to boosting
    • Freund, Y. and Schapire, R. (1997) A decision-theoretic generalization of online learning and an application to boosting. J. Comput. Sys. Sci., 55, 119-33.
    • (1997) J. Comput. Sys. Sci. , vol.55 , pp. 119-133
    • Freund, Y.1    Schapire, R.2
  • 13
    • 0033569406 scopus 로고    scopus 로고
    • Molecular classification of cancer: Class discovery and class prediction by gene expression monitoring
    • Golub, T.R. et al. (1999) Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science, 286, 531-33.
    • (1999) Science , vol.286 , pp. 531-533
    • Golub, T.R.1
  • 14
    • 0036161259 scopus 로고    scopus 로고
    • Gene selection for cancer classification using support vector machine
    • Guyon, I. et al. (2002) Gene selection for cancer classification using support vector machine. Mach. Learn., 46, 389-33.
    • (2002) Mach. Learn. , vol.46 , pp. 389-433
    • Guyon, I.1
  • 15
    • 33745561205 scopus 로고    scopus 로고
    • An introduction to variable and feature selection
    • Guyon, I. and Elisseeff, A. (2003) An introduction to variable and feature selection. JMLR, 3, 1157-33.
    • (2003) JMLR , vol.3 , pp. 1157-2143
    • Guyon, I.1    Elisseeff, A.2
  • 17
    • 79957948242 scopus 로고    scopus 로고
    • Negative epistasis between beneficial mutations in an evolving bacterial population
    • Khan, A.I. et al. (2011) Negative epistasis between beneficial mutations in an evolving bacterial population. Science, 332, 1193-33.
    • (2011) Science , vol.332 , pp. 1193-2143
    • Khan, A.I.1
  • 18
    • 77955137081 scopus 로고    scopus 로고
    • Structures and assumptions: Strategies to harness gene x gene and gene x environment interactions in GWAS
    • Kooperberg, C. et al. (2010) Structures and assumptions: strategies to harness gene x gene and gene x environment interactions in GWAS. Stat. Sci., 24, 472-33.
    • (2010) Stat. Sci. , vol.24 , pp. 472-533
    • Kooperberg, C.1
  • 19
    • 17044405923 scopus 로고    scopus 로고
    • Toward integrating feature selection algorithms for classification and clustering
    • Liu, H. and Yu, L. (2005) Toward integrating feature selection algorithms for classification and clustering. IEEE Tran. Knowl Data Eng., 17, 491-33.
    • (2005) IEEE Tran. Knowl Data Eng. , vol.17 , pp. 491-533
    • Liu, H.1    Yu, L.2
  • 20
    • 0036436758 scopus 로고    scopus 로고
    • Backward haplotype transmission association algo-rithm\a fast multiple-marker screening method
    • Lo, S.H. and Zheng, T. (2002) Backward haplotype transmission association algo-rithm\a fast multiple-marker screening method. Hum. Her., 53, 197-33.
    • (2002) Hum. Her. , vol.53 , pp. 197-233
    • Lo, S.H.1    Zheng, T.2
  • 21
    • 69449103972 scopus 로고    scopus 로고
    • Epistasis and its implication for personal genetics
    • Moore, J.H. and Williams, S.M. (2009) Epistasis and its implication for personal genetics. Am. J. Hum. Gen., 853, 309-33.
    • (2009) Am. J. Hum. Gen. , vol.853 , pp. 309-333
    • Moore, J.H.1    Williams, S.M.2
  • 22
    • 0034680102 scopus 로고    scopus 로고
    • Molecular portraits of human breast tumours
    • Perou, C.M. et al. (2000) Molecular portraits of human breast tumours. Nature, 406, 747-33.
    • (2000) Nature , vol.406 , pp. 747-833
    • Perou, C.M.1
  • 23
    • 80053319008 scopus 로고    scopus 로고
    • GLUT1 and CAIX expression profiles in breast cancer correlate with adverse prognostic factors and MCT1 overexpression
    • Pinheiro, C. et al. (2011) GLUT1 and CAIX expression profiles in breast cancer correlate with adverse prognostic factors and MCT1 overexpression. Histol. Histopathol., 26, 1279-33.
    • (2011) Histol. Histopathol. , vol.26 , pp. 1279-2243
    • Pinheiro, C.1
  • 24
    • 35748932917 scopus 로고    scopus 로고
    • A review of feature selection techniques in bioinformatics
    • Saeys, Y. et al. (2007) A review of feature selection techniques in bioinformatics. Bioinformatics, 23, 2507-33.
    • (2007) Bioinformatics , vol.23 , pp. 2507-2533
    • Saeys, Y.1
  • 25
    • 37249085147 scopus 로고    scopus 로고
    • Identification of SNP interactions using logic regression
    • Schwender, H. and Ickstadt, K. (2008) Identification of SNP interactions using logic regression. Biostatistics, 9, 187-33.
    • (2008) Biostatistics , vol.9 , pp. 187-233
    • Schwender, H.1    Ickstadt, K.2
  • 26
    • 58149396842 scopus 로고    scopus 로고
    • Genetic architecture of complex traits: Large phenotypic effects and pervasive epistasis
    • Shao, H. et al. (2008) Genetic architecture of complex traits: large phenotypic effects and pervasive epistasis. Proc. Natl Acad. Sci. USA, 105, 19910-33.
    • (2008) Proc. Natl Acad. Sci. USA , vol.105 , pp. 19910-19933
    • Shao, H.1
  • 27
    • 0042838307 scopus 로고    scopus 로고
    • Breast cancer classification and prognosis based on gene expression profiles from a population-based study
    • Sotiriou, C. et al. (2003) Breast cancer classification and prognosis based on gene expression profiles from a population-based study. Proc. Natl Acad. Sci. USA, 100, 10393-33.
    • (2003) Proc. Natl Acad. Sci. USA , vol.100 , pp. 10393-20343
    • Sotiriou, C.1
  • 28
    • 85194972808 scopus 로고    scopus 로고
    • Regression shrinkage and selection via the lasso
    • Tibshirani, R. (1996) Regression shrinkage and selection via the lasso. J. R. Stat. Soc. Ser. B, 58, 267-33.
    • (1996) J. R. Stat. Soc. Ser. B , vol.58 , pp. 267-333
    • Tibshirani, R.1
  • 30
    • 18244409687 scopus 로고    scopus 로고
    • Gene expression profiling predicts clinical outcome of breast cancer
    • van't Veer, L.J. et al. (2002) Gene expression profiling predicts clinical outcome of breast cancer. Nature, 415, 530-33.
    • (2002) Nature , vol.415 , pp. 530-533
    • Van'T Veer, L.J.1
  • 31
    • 33645035051 scopus 로고    scopus 로고
    • Model selection and estimation in regression with grouped variables
    • Yuan, M. and Lin, Y. (2006) Model selection and estimation in regression with grouped variables. J. R. Stat. Soc. Ser. B, 68, 49-33.
    • (2006) J. R. Stat. Soc. Ser. B , vol.68 , pp. 49-33
    • Yuan, M.1    Lin, Y.2
  • 32
    • 0037084658 scopus 로고    scopus 로고
    • KRIT1 association with the integrin-binding protein ICAP-1: A new direction in the elucidation of cerebral cavernous malformations (CCM1) pathogenesis
    • Zawistowski, J.S. et al. (2002) KRIT1 association with the integrin-binding protein ICAP-1: a new direction in the elucidation of cerebral cavernous malformations (CCM1) pathogenesis. Hum. Mol. Genet., 11, 389-33.
    • (2002) Hum. Mol. Genet. , vol.11 , pp. 389-433
    • Zawistowski, J.S.1
  • 33
    • 0035542933 scopus 로고    scopus 로고
    • Interaction between krit1 and icap1alpha infers perturbation of integrin beta1-mediated angiogenesis in the pathogenesis of cerebral cavernous malformation
    • Zhang, J. et al. (2001) Interaction between krit1 and icap1alpha infers perturbation of integrin beta1-mediated angiogenesis in the pathogenesis of cerebral cavernous malformation. Hum. Mol. Genet., 10, 2953-33.
    • (2001) Hum. Mol. Genet. , vol.10 , pp. 2953-3943
    • Zhang, J.1
  • 34
    • 30344438839 scopus 로고    scopus 로고
    • Gene selection using support vector machine with non-convex penalty
    • Zhang, H. et al. (2006) Gene selection using support vector machine with non-convex penalty. Bioinformatics, 22, 88-33.
    • (2006) Bioinformatics , vol.22 , pp. 88-33
    • Zhang, H.1
  • 35
    • 35348875350 scopus 로고    scopus 로고
    • On selection bias with prediction rules formed from gene expression data
    • Zhu, J.X. et al. (2008) On selection bias with prediction rules formed from gene expression data. J. Stat. Plann. Infer., 138, 374-33.
    • (2008) J. Stat. Plann. Infer. , vol.138 , pp. 374-433
    • Zhu, J.X.1
  • 36
    • 16244401458 scopus 로고    scopus 로고
    • Regularization and variable selection via the elastic net
    • Zou, H. and Hastie, T. (2005) Regularization and variable selection via the elastic net. J. R. Stat. Soc. Ser. B, 67, 301-33.
    • (2005) J. R. Stat. Soc. Ser. B , vol.67 , pp. 301-333
    • Zou, H.1    Hastie, T.2
  • 37
    • 84867874669 scopus 로고    scopus 로고
    • The mystery of missing heritability: Genetic interactions create phantom heritability
    • Zuk, O. et al. (2011) The mystery of missing heritability: genetic interactions create phantom heritability. Proc. Natl Acad. Sci. USA, Early Edition, 1-6.
    • (2011) Proc. Natl Acad. Sci. USA, Early Edition , pp. 1-6
    • Zuk, O.1


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