-
1
-
-
35448996158
-
Robust protein- protein interactions in crowded cellular environments
-
Deeds, E. J., Ashenberg, O., Gerardin, J. & Shakhnovich, E. I. Robust protein- protein interactions in crowded cellular environments. Proc. Natl Acad. Sci. USA 104, 14952-14957 (2007).
-
(2007)
Proc. Natl Acad. Sci. USA
, vol.104
, pp. 14952-14957
-
-
Deeds, E.J.1
Ashenberg, O.2
Gerardin, J.3
Shakhnovich, E.I.4
-
2
-
-
33644927702
-
Pumping RNA. Nuclear bodybuilding along the RNA pipeline
-
Matera, G. & Shpargel, K. Pumping RNA. Nuclear bodybuilding along the RNA pipeline. Curr. Opin. Cell Biol. 18, 317-324 (2006).
-
(2006)
Curr. Opin. Cell Biol.
, vol.18
, pp. 317-324
-
-
Matera, G.1
Shpargel, K.2
-
8
-
-
0035478585
-
Macromolecular crowding: Obvious but underappreciated
-
Ellis, R. J. Macromolecular crowding: obvious but underappreciated. Trends Biochem. Sci. 26, 597-604 (2001).
-
(2001)
Trends Biochem. Sci.
, vol.26
, pp. 597-604
-
-
Ellis, R.J.1
-
9
-
-
41049090929
-
Macromolecular crowding and confinement: Biochemical, biophysical, and potential physiological consequences
-
Zhou, H. X., Rivas, G. & Minton, A. P. Macromolecular crowding and confinement: biochemical, biophysical, and potential physiological consequences. Annu. Rev. Biophys. 37, 375-397 (2008).
-
(2008)
Annu. Rev. Biophys.
, vol.37
, pp. 375-397
-
-
Zhou, H.X.1
Rivas, G.2
Minton, A.P.3
-
10
-
-
17844409041
-
Dynamic microcompartmentation in synthetic cells
-
Long, M. S., Jones, C. D., Helfrich, M. R., Mangeney-Slavin, L. K. & Keating, C. D. Dynamic microcompartmentation in synthetic cells. Proc. Natl Acad. Sci. USA 102, 5920-5925 (2005).
-
(2005)
Proc. Natl Acad. Sci. USA
, vol.102
, pp. 5920-5925
-
-
Long, M.S.1
Jones, C.D.2
Helfrich, M.R.3
Mangeney-Slavin, L.K.4
Keating, C.D.5
-
11
-
-
0024962537
-
Fundamental studies of biomolecule partitioning in aqueous two-phase systems
-
Diamond, A. D. & Hsu, J. T. Fundamental studies of biomolecule partitioning in aqueous two-phase systems. Biotechnol. Bioeng. 34, 1000-1014 (1989).
-
(1989)
Biotechnol. Bioeng.
, vol.34
, pp. 1000-1014
-
-
Diamond, A.D.1
Hsu, J.T.2
-
13
-
-
0029073091
-
The crystal structure of an all-RNA hammerhead ribozyme: A proposed mechanism for RNA catalytic cleavage
-
Scott, W. G., Finch, J. T. & Klug, A. The crystal structure of an all-RNA hammerhead ribozyme: a proposed mechanism for RNA catalytic cleavage. Cell 81, 991-1002 (1995).
-
(1995)
Cell
, vol.81
, pp. 991-1002
-
-
Scott, W.G.1
Finch, J.T.2
Klug, A.3
-
14
-
-
33746228126
-
Tertiary contacts distant from the active site prime a ribozyme for catalysis
-
Martick, M. & Scott, W. G. Tertiary contacts distant from the active site prime a ribozyme for catalysis. Cell 126, 309-320 (2006).
-
(2006)
Cell
, vol.126
, pp. 309-320
-
-
Martick, M.1
Scott, W.G.2
-
15
-
-
0043009734
-
Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity
-
Khvorova, A., Lescoute, A., Westhof, E. & Jayasena, S. D. Sequence elements outside the hammerhead ribozyme catalytic core enable intracellular activity. Nature Struct. Mol. Biol. 10, 708-712 (2003).
-
(2003)
Nature Struct. Mol. Biol.
, vol.10
, pp. 708-712
-
-
Khvorova, A.1
Lescoute, A.2
Westhof, E.3
Jayasena, S.D.4
-
16
-
-
33745056478
-
Three conserved guanosines approach the reaction site in native and minimal hammerhead ribozymes
-
Lambert, D., Heckman, J. E. & Burke, J. M. Three conserved guanosines approach the reaction site in native and minimal hammerhead ribozymes. Biochemistry 45, 7140-7147 (2006).
-
(2006)
Biochemistry
, vol.45
, pp. 7140-7147
-
-
Lambert, D.1
Heckman, J.E.2
Burke, J.M.3
-
17
-
-
12844269766
-
Characterization of a native hammerhead ribozyme derived from schistosomes
-
Osborne, E. M., Schaak, J. E. & Derose, V. J. Characterization of a native hammerhead ribozyme derived from schistosomes. RNA 11, 187-196 (2005).
-
(2005)
RNA
, vol.11
, pp. 187-196
-
-
Osborne, E.M.1
Schaak, J.E.2
Derose, V.J.3
-
18
-
-
0028234517
-
Thermodynamics of RNA folding in a conserved ribosomal RNA domain
-
Laing, L. G. & Draper, D. E. Thermodynamics of RNA folding in a conserved ribosomal RNA domain. J. Mol. Biol. 237, 560-576 (1994).
-
(1994)
J. Mol. Biol.
, vol.237
, pp. 560-576
-
-
Laing, L.G.1
Draper, D.E.2
-
19
-
-
0028288686
-
A kinetic and thermodynamic framework for the hammerhead ribozyme reaction
-
Hertel, K. J., Herschlag, D. & Uhlenbeck, O. C. A kinetic and thermodynamic framework for the hammerhead ribozyme reaction. Biochemistry 33, 3374-3385 (1994).
-
(1994)
Biochemistry
, vol.33
, pp. 3374-3385
-
-
Hertel, K.J.1
Herschlag, D.2
Uhlenbeck, O.C.3
-
20
-
-
0030013338
-
Specificity of hammerhead ribozyme cleavage
-
Hertel, K. J., Hershclag, D. & Uhlenbeck, O. C. Specificity of hammerhead ribozyme cleavage. EMBO J. 15, 3751-3757 (1996).
-
(1996)
EMBO J.
, vol.15
, pp. 3751-3757
-
-
Hertel, K.J.1
Hershclag, D.2
Uhlenbeck, O.C.3
-
21
-
-
30844433959
-
Nanoparticle conjugation increases protein partitioning in aqueous two-phase systems
-
Long, M. S. & Keating, C. D. Nanoparticle conjugation increases protein partitioning in aqueous two-phase systems. Anal. Chem. 78, 379-386 (2006).
-
(2006)
Anal. Chem.
, vol.78
, pp. 379-386
-
-
Long, M.S.1
Keating, C.D.2
-
22
-
-
0003880161
-
-
Garland Publishing
-
Alberts, B., Bray, D., Lewis, J., Raff, M., Roberts, K. & Watson, J. D. Molecular Biology of the Cell 3rd edn (Garland Publishing, 1994).
-
(1994)
Molecular Biology of the Cell 3rd Edn
-
-
Alberts, B.1
Bray, D.2
Lewis, J.3
Raff, M.4
Roberts, K.5
Watson, J.D.6
-
23
-
-
0002198148
-
The Role of Metal Ions in RNA Biochemistry
-
Cold Spring Harbor Press
-
Feig, A. L. & Uhlenbeck, O. The Role of Metal Ions in RNA Biochemistry. In The RNA World (Cold Spring Harbor Press, 1999).
-
(1999)
The RNA World
-
-
Feig, A.L.1
Uhlenbeck, O.2
-
24
-
-
0025149015
-
Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme
-
Herschlag, D. & Cech, T. R. Catalysis of RNA cleavage by the Tetrahymena thermophila ribozyme. Biochemistry 29, 10172-10180 (1990).
-
(1990)
Biochemistry
, vol.29
, pp. 10172-10180
-
-
Herschlag, D.1
Cech, T.R.2
-
25
-
-
70450159038
-
Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes
-
Nakano, S., Karimata, H. T., Kitagawa, Y. & Sugimoto, N. Facilitation of RNA enzyme activity in the molecular crowding media of cosolutes. J. Am. Chem. Soc. 131, 16881-16888 (2009).
-
(2009)
J. Am. Chem. Soc.
, vol.131
, pp. 16881-16888
-
-
Nakano, S.1
Karimata, H.T.2
Kitagawa, Y.3
Sugimoto, N.4
-
27
-
-
18044377963
-
Principles of microRNA-target recognition
-
Brennecke, J., Stark, A., Russell, R. B. & Cohen, S. M. Principles of microRNA-target recognition. PLoS Biol. 3, e85 (2005).
-
(2005)
PLoS Biol.
, vol.3
-
-
Brennecke, J.1
Stark, A.2
Russell, R.B.3
Cohen, S.M.4
-
28
-
-
0037153125
-
Molecular evolution: Booting up life
-
Joyce, G. F. Molecular evolution: booting up life. Nature 420, 278-279 (2002).
-
(2002)
Nature
, vol.420
, pp. 278-279
-
-
Joyce, G.F.1
-
30
-
-
25844472658
-
Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization
-
Levy, M., Griswold, K. E. & Ellington, A. D. Direct selection of trans-acting ligase ribozymes by in vitro compartmentalization. RNA 11, 1555-1562 (2005).
-
(2005)
RNA
, vol.11
, pp. 1555-1562
-
-
Levy, M.1
Griswold, K.E.2
Ellington, A.D.3
-
31
-
-
0035836707
-
Directed evolution of polymerase function by compartmentalized self-replication
-
Ghadessy, F. J., Ong, J. L. & Holliger, P. Directed evolution of polymerase function by compartmentalized self-replication. Proc. Natl Acad. Sci. USA 98, 4552-4557 (2001).
-
(2001)
Proc. Natl Acad. Sci. USA
, vol.98
, pp. 4552-4557
-
-
Ghadessy, F.J.1
Ong, J.L.2
Holliger, P.3
-
32
-
-
0037413687
-
Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization
-
Griffiths, A. D. & Tawfik, D. S. Directed evolution of an extremely fast phosphotriesterase by in vitro compartmentalization. EMBO J. 22, 24-35 (2003).
-
(2003)
EMBO J.
, vol.22
, pp. 24-35
-
-
Griffiths, A.D.1
Tawfik, D.S.2
-
33
-
-
27144515901
-
Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies
-
Brengues, M., Teixeira, D. & Parker, R. Movement of eukaryotic mRNAs between polysomes and cytoplasmic processing bodies. Science 310, 486-489 (2005).
-
(2005)
Science
, vol.310
, pp. 486-489
-
-
Brengues, M.1
Teixeira, D.2
Parker, R.3
-
34
-
-
67649976463
-
Germline P granules are liquid droplets that localize by controlled dissolution/condensation
-
Brangwynne, C. P. et al. Germline P granules are liquid droplets that localize by controlled dissolution/condensation. Science 324, 1729-1732 (2009).
-
(2009)
Science
, vol.324
, pp. 1729-1732
-
-
Brangwynne, C.P.1
-
35
-
-
0041669439
-
Nuclear speckles: A model for nuclear organelles
-
Lamond, A. I. & Spector, D. L. Nuclear speckles: a model for nuclear organelles. Nature Rev. Mol. Cell Biol. 4, 605-612 (2003).
-
(2003)
Nature Rev. Mol. Cell Biol.
, vol.4
, pp. 605-612
-
-
Lamond, A.I.1
Spector, D.L.2
-
36
-
-
0034717122
-
Like attracts like: Getting RNA processing together in the nucleus
-
Lewis, J. D. & Tollervey, D. Like attracts like: getting RNA processing together in the nucleus. Science 288, 1385-1389 (2000).
-
(2000)
Science
, vol.288
, pp. 1385-1389
-
-
Lewis, J.D.1
Tollervey, D.2
-
37
-
-
79955832506
-
Soft active aggregates:mechanics, dynamics and self-assembly of liquid-like intracellular protein bodies
-
Brangwynne, C. P. Soft active aggregates:mechanics, dynamics and self-assembly of liquid-like intracellular protein bodies. Soft Matter 7, 3052-3059 (2011).
-
(2011)
Soft Matter
, vol.7
, pp. 3052-3059
-
-
Brangwynne, C.P.1
-
38
-
-
0037459063
-
Considering nuclear compartmentalization in the light of nuclear dynamics
-
Chubb, J. R. & Bickmore, W. A. Considering nuclear compartmentalization in the light of nuclear dynamics. Cell 112, 403-406 (2003).
-
(2003)
Cell
, vol.112
, pp. 403-406
-
-
Chubb, J.R.1
Bickmore, W.A.2
-
39
-
-
1942425450
-
A role for macromolecular crowding effects in the assembly and function of compartments in the nucleus
-
Hancock, R. A role for macromolecular crowding effects in the assembly and function of compartments in the nucleus. J. Struct. Biol. 146, 281-290 (2004).
-
(2004)
J. Struct. Biol.
, vol.146
, pp. 281-290
-
-
Hancock, R.1
-
40
-
-
79952723337
-
Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes
-
Brangwynne, C. P., Mitchison, T. J. & Hyman, A. A. Active liquid-like behavior of nucleoli determines their size and shape in Xenopus laevis oocytes. Proc. Natl Acad. Sci. USA 108, 4334-4339 (2011).
-
(2011)
Proc. Natl Acad. Sci. USA
, vol.108
, pp. 4334-4339
-
-
Brangwynne, C.P.1
Mitchison, T.J.2
Hyman, A.A.3
-
41
-
-
0013824051
-
On the evolution of the genetic code
-
Woese, C. R. On the evolution of the genetic code. Proc. Natl Acad. Sci. USA 54, 1546-1552 (1965).
-
(1965)
Proc. Natl Acad. Sci. USA
, vol.54
, pp. 1546-1552
-
-
Woese, C.R.1
-
42
-
-
0014369024
-
Evolution of the genetic apparatus
-
Orgel, L. E. Evolution of the genetic apparatus. J. Mol. Biol. 38, 381-393 (1968).
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 381-393
-
-
Orgel, L.E.1
-
43
-
-
0014378880
-
The origin of the genetic code
-
Crick, F. C. The origin of the genetic code. J. Mol. Biol. 38, 367-379 (1968).
-
(1968)
J. Mol. Biol.
, vol.38
, pp. 367-379
-
-
Crick, F.C.1
-
44
-
-
0035905809
-
Synthesizing life
-
Szostak, J. W., Bartel, D. P. & Luisi, P. L. Synthesizing life. Nature 409, 387-390 (2001).
-
(2001)
Nature
, vol.409
, pp. 387-390
-
-
Szostak, J.W.1
Bartel, D.P.2
Luisi, P.L.3
-
45
-
-
84870187166
-
Aqueous phase separation as a possible route to compartmentalization of biological molecules
-
Keating, C. D. Aqueous phase separation as a possible route to compartmentalization of biological molecules. Acc. Chem. Res. http://dx.doi.org/10.1021/ar200294y.
-
Acc. Chem. Res
-
-
Keating, C.D.1
-
46
-
-
80052120088
-
Peptide-nucleotide microdroplets as a step towards a membrane-free protocell model
-
Koga, S., Williams, D. S., Perriman, A. W. & Mann, S. Peptide-nucleotide microdroplets as a step towards a membrane-free protocell model. Nature Chem. 3, 720-724 (2011).
-
(2011)
Nature Chem.
, vol.3
, pp. 720-724
-
-
Koga, S.1
Williams, D.S.2
Perriman, A.W.3
Mann, S.4
-
47
-
-
3643088199
-
Synthesizing action of polynucleotidephosphorylase of Micrococcus lysodeikticus in solution and in coacervate systems
-
Oparin, A. I., Serebrovskaya, K. B. & Auerman, T. L. Synthesizing action of polynucleotidephosphorylase of Micrococcus lysodeikticus in solution and in coacervate systems. Biokhimiya 26, 499-504 (1961).
-
(1961)
Biokhimiya
, vol.26
, pp. 499-504
-
-
Oparin, A.I.1
Serebrovskaya, K.B.2
Auerman, T.L.3
|