메뉴 건너뛰기




Volumn 18, Issue 4, 2012, Pages 287-300

Quantitative RT-PCR analysis of 20 transcription factor genes of MADS, ARF, HAP2, MBF and HB families in moisture stressed shoot and root tissues of sorghum

Author keywords

cDNA; Moisture stress; Quantitative real time PCR; Sorghum; Transcription factor genes

Indexed keywords


EID: 84867746005     PISSN: 09715894     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12298-012-0135-5     Document Type: Article
Times cited : (22)

References (50)
  • 1
    • 77956817127 scopus 로고    scopus 로고
    • Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor HB1
    • Ariel F, Diet D, Verdenaud M, Gruber V, Frugier F, Chan R, Crespi M (2010) Environmental regulation of lateral root emergence in Medicago truncatula requires the HD-Zip I transcription factor HB1. Plant Cell 22: 2171-2183.
    • (2010) Plant Cell , vol.22 , pp. 2171-2183
    • Ariel, F.1    Diet, D.2    Verdenaud, M.3    Gruber, V.4    Frugier, F.5    Chan, R.6    Crespi, M.7
  • 2
    • 34547982039 scopus 로고    scopus 로고
    • MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress
    • Arora R, Agarwal P, Ray S, Singh AK, Singh VP, Tyagi AK, Kapoor S (2007) MADS-box gene family in rice: genome-wide identification, organization and expression profiling during reproductive development and stress. BMC Genomics 8: 242-255.
    • (2007) BMC Genomics , vol.8 , pp. 242-255
    • Arora, R.1    Agarwal, P.2    Ray, S.3    Singh, A.K.4    Singh, V.P.5    Tyagi, A.K.6    Kapoor, S.7
  • 3
    • 34547176148 scopus 로고    scopus 로고
    • A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors
    • Caldana C, Scheible WR, Mueller-Roeber B, Ruzicic S (2007) A quantitative RT-PCR platform for high-throughput expression profiling of 2500 rice transcription factors. Plant Meth 3: 1746-1748.
    • (2007) Plant Meth , vol.3 , pp. 1746-1748
    • Caldana, C.1    Scheible, W.R.2    Mueller-Roeber, B.3    Ruzicic, S.4
  • 4
    • 3442876969 scopus 로고    scopus 로고
    • Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets
    • Claus AL, Jens JL, Torben OF (2004) Normalization of real-time quantitative reverse transcription-PCR data: a model-based variance estimation approach to identify genes suited for normalization, applied to bladder and colon cancer data sets. Cancer Res 64: 5245-5250.
    • (2004) Cancer Res , vol.64 , pp. 5245-5250
    • Claus, A.L.1    Jens, J.L.2    Torben, O.F.3
  • 6
    • 1942475192 scopus 로고    scopus 로고
    • Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes
    • Czechowski T, Bari RP, Stitt M, Scheible WR, Udvardi MK (2004) Real-time RT-PCR profiling of over 1400 Arabidopsis transcription factors: unprecedented sensitivity reveals novel root- and shoot-specific genes. Plant J 38: 366-379.
    • (2004) Plant J , vol.38 , pp. 366-379
    • Czechowski, T.1    Bari, R.P.2    Stitt, M.3    Scheible, W.R.4    Udvardi, M.K.5
  • 7
    • 0032117904 scopus 로고    scopus 로고
    • Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis
    • Edwards D, Murray JA, Smith AG (1998) Multiple genes encoding the conserved CCAAT-box transcription factor complex are expressed in Arabidopsis. Plant Physiol 117(3): 1015-1022.
    • (1998) Plant Physiol , vol.117 , Issue.3 , pp. 1015-1022
    • Edwards, D.1    Murray, J.A.2    Smith, A.G.3
  • 9
    • 70450170233 scopus 로고    scopus 로고
    • Role of auxin-responsive genes in biotic stress responses
    • Ghanashyam C, Jain M (2009) Role of auxin-responsive genes in biotic stress responses. Plant Signa Behav 4(9): 846-848.
    • (2009) Plant Signa Behav , vol.4 , Issue.9 , pp. 846-848
    • Ghanashyam, C.1    Jain, M.2
  • 10
    • 49449105606 scopus 로고    scopus 로고
    • The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors
    • Huang D, Wu W, Abrams SR, Cutler AJ (2008) The relationship of drought-related gene expression in Arabidopsis thaliana to hormonal and environmental factors. J Exp Bot 59(11): 2991-3007.
    • (2008) J Exp Bot , vol.59 , Issue.11 , pp. 2991-3007
    • Huang, D.1    Wu, W.2    Abrams, S.R.3    Cutler, A.J.4
  • 11
    • 0001282586 scopus 로고
    • In-situ hybridisation in plants
    • In: Bowles DJ, Gurr SJ, McPherson M (eds.). Oxford University Press
    • Jackson D (1991). In-situ hybridisation in plants. Molecular plant pathology: A practical approach. In: Bowles DJ, Gurr SJ, McPherson M (eds.). Oxford University Press.
    • (1991) Molecular plant pathology: A practical approach
    • Jackson, D.1
  • 12
    • 43549083731 scopus 로고    scopus 로고
    • Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice
    • Jain M, Tyagi AK, Khurana J (2008) Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice. FEBS J 275(11): 2845-2861.
    • (2008) FEBS J , vol.275 , Issue.11 , pp. 2845-2861
    • Jain, M.1    Tyagi, A.K.2    Khurana, J.3
  • 13
    • 33750367871 scopus 로고    scopus 로고
    • Compressive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes
    • Jiang Y, Deyholos MK (2006) Compressive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. BMC Plant Biol 47: 6-25.
    • (2006) BMC Plant Biol , vol.47 , pp. 6-25
    • Jiang, Y.1    Deyholos, M.K.2
  • 15
    • 70449555169 scopus 로고    scopus 로고
    • Analysis of gene expression and physiological responses in three Mexican maize landraces under drought stress and recovery irrigation
    • Kanashiro C, Vazquez CC, Ibarra-Laclette E, Herrera-Estrella L and Simpson J (2009). Analysis of gene expression and physiological responses in three Mexican maize landraces under drought stress and recovery irrigation. PLoS One 4(10): e7531.
    • (2009) PLoS One , vol.4 , Issue.10
    • Kanashiro, C.1    Vazquez, C.C.2    Ibarra-Laclette, E.3    Herrera-Estrella, L.4    Simpson, J.5
  • 16
    • 80055108832 scopus 로고    scopus 로고
    • Non-radioactive in situ hybridization protocol applicable for Norway spruce and a range of plant species
    • Karlgren A, Carlsson J, Gyllenstrand N, Lagercrantz U, Sundstrom JF (2009) Non-radioactive in situ hybridization protocol applicable for Norway spruce and a range of plant species. J Vis Exp 23: 43-48.
    • (2009) J Vis Exp , vol.23 , pp. 43-48
    • Karlgren, A.1    Carlsson, J.2    Gyllenstrand, N.3    Lagercrantz, U.4    Sundstrom, J.F.5
  • 17
    • 33846491830 scopus 로고    scopus 로고
    • Abiotic and biotic stress tolerance in Arabidopsis overexpressing the multiprotein bridging factor 1a (MBF1a) transcriptional coactivator gene
    • Kim MJ, Lim GH, Kim ES, Ko CB, Yang KY, Jeong JA, Lee MC, Kim CS (2007) Abiotic and biotic stress tolerance in Arabidopsis overexpressing the multiprotein bridging factor 1a (MBF1a) transcriptional coactivator gene. Biochem Biophys Res Commun 354: 440-446.
    • (2007) Biochem Biophys Res Commun , vol.354 , pp. 440-446
    • Kim, M.J.1    Lim, G.H.2    Kim, E.S.3    Ko, C.B.4    Yang, K.Y.5    Jeong, J.A.6    Lee, M.C.7    Kim, C.S.8
  • 18
    • 33847213131 scopus 로고    scopus 로고
    • Role of SVP in the control of flowering time by ambient temperature in Arabidopsis
    • Lee JH, Yoo SJ, Park SH, Hwang I, Lee JS, Ahn JH (2007) Role of SVP in the control of flowering time by ambient temperature in Arabidopsis. Genes Dev 21: 397-402.
    • (2007) Genes Dev , vol.21 , pp. 397-402
    • Lee, J.H.1    Yoo, S.J.2    Park, S.H.3    Hwang, I.4    Lee, J.S.5    Ahn, J.H.6
  • 19
    • 38349094258 scopus 로고    scopus 로고
    • Identification of drought-responsive genes from maize inbred lines
    • Li FH, Fu FL, Sha LN, Li WC (2007) Identification of drought-responsive genes from maize inbred lines. J Plant Physiol Mol Biol 33(6): 607-611.
    • (2007) J Plant Physiol Mol Biol , vol.33 , Issue.6 , pp. 607-611
    • Li, F.H.1    Fu, F.L.2    Sha, L.N.3    Li, W.C.4
  • 20
    • 24944443667 scopus 로고    scopus 로고
    • Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses
    • Luo H, Song F, Zheng Z (2005) Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses. J Exp Bot 56(420): 2673-2682.
    • (2005) J Exp Bot , vol.56 , Issue.420 , pp. 2673-2682
    • Luo, H.1    Song, F.2    Zheng, Z.3
  • 21
    • 33846817384 scopus 로고    scopus 로고
    • Early PLDα-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis
    • Mane SP, Vasquez-Robinet C, Sioson AA, Heath LS, Grene R (2007) Early PLDα-mediated events in response to progressive drought stress in Arabidopsis: a transcriptome analysis. J Exp Bot 58(2): 241-252.
    • (2007) J Exp Bot , vol.58 , Issue.2 , pp. 241-252
    • Mane, S.P.1    Vasquez-Robinet, C.2    Sioson, A.A.3    Heath, L.S.4    Grene, R.5
  • 22
    • 0345059080 scopus 로고    scopus 로고
    • Accurate and statistically verified quantification of relative mRNA abundances using SYBR Green I and Real-Time RT-PCR
    • Marino HJ, Cook P, Miller KS (2003) Accurate and statistically verified quantification of relative mRNA abundances using SYBR Green I and Real-Time RT-PCR. J Immunol Meth 283: 291-306.
    • (2003) J Immunol Meth , vol.283 , pp. 291-306
    • Marino, H.J.1    Cook, P.2    Miller, K.S.3
  • 28
    • 2442480579 scopus 로고    scopus 로고
    • Sorghum and salinity: I. response of growth, water relations, and ion accumulation to NaCl salinity
    • Netondo GW, Onyango JC, Beck E (2004) Sorghum and salinity: I. response of growth, water relations, and ion accumulation to NaCl salinity. Crop Sci 44: 797-805.
    • (2004) Crop Sci , vol.44 , pp. 797-805
    • Netondo, G.W.1    Onyango, J.C.2    Beck, E.3
  • 29
    • 16544367704 scopus 로고    scopus 로고
    • The homeobox genes ATHB12 and ATHB7 encode potential regulators of growth in response to water deficit in Arabidopsis
    • Olsson ASB, Engstrom P, Soderman E (2004) The homeobox genes ATHB12 and ATHB7 encode potential regulators of growth in response to water deficit in Arabidopsis. Plant Mol Biol 55: 663-677.
    • (2004) Plant Mol Biol , vol.55 , pp. 663-677
    • Olsson, A.S.B.1    Engstrom, P.2    Soderman, E.3
  • 30
    • 67650156804 scopus 로고    scopus 로고
    • Identification of nutrient-responsive Arabidopsis and rapeseed MicroRNAs by comprehensive Real-Time Polymerase Chain Reaction profiling and small RNA sequencing
    • Pant BD, Musialak-Lange M, Nuc P, May P, Buhtz A, Kehr J, Walther D, Scheible WR (2009) Identification of nutrient-responsive Arabidopsis and rapeseed MicroRNAs by comprehensive Real-Time Polymerase Chain Reaction profiling and small RNA sequencing. Plant Physiol 150(3): 1541-1555.
    • (2009) Plant Physiol , vol.150 , Issue.3 , pp. 1541-1555
    • Pant, B.D.1    Musialak-Lange, M.2    Nuc, P.3    May, P.4    Buhtz, A.5    Kehr, J.6    Walther, D.7    Scheible, W.R.8
  • 32
    • 0034636418 scopus 로고    scopus 로고
    • B and C floral organ identity functions require SEPALLATA MADS-box genes
    • Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF (2000) B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature 405: 200-203.
    • (2000) Nature , vol.405 , pp. 200-203
    • Pelaz, S.1    Ditta, G.S.2    Baumann, E.3    Wisman, E.4    Yanofsky, M.F.5
  • 33
    • 9144230726 scopus 로고    scopus 로고
    • Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses
    • Rabbani MA, Maruyama K, Abe H, Khan MA, Katsura K, Ito Y, Yoshiwara K, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2003) Monitoring expression profiles of rice genes under cold, drought, and high-salinity stresses and abscisic acid application using cDNA microarray and RNA gel-blot analyses. Plant Physiol 133: 1755-1767.
    • (2003) Plant Physiol , vol.133 , pp. 1755-1767
    • Rabbani, M.A.1    Maruyama, K.2    Abe, H.3    Khan, M.A.4    Katsura, K.5    Ito, Y.6    Yoshiwara, K.7    Seki, M.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10
  • 34
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C, Ruitjer JM, Deprez RH, Moorman AF (2003) Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci Lett 13: 62-66.
    • (2003) Neurosci Lett , vol.13 , pp. 62-66
    • Ramakers, C.1    Ruitjer, J.M.2    Deprez, R.H.3    Moorman, A.F.4
  • 35
    • 1942533606 scopus 로고    scopus 로고
    • When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress
    • Rizhsky L, Liang H, Shuman J, Shulaev V, Davletova S, Mittler R (2004) When defense pathways collide. The response of Arabidopsis to a combination of drought and heat stress. Plant Physiol 134: 1683-1696.
    • (2004) Plant Physiol , vol.134 , pp. 1683-1696
    • Rizhsky, L.1    Liang, H.2    Shuman, J.3    Shulaev, V.4    Davletova, S.5    Mittler, R.6
  • 37
    • 54949145747 scopus 로고    scopus 로고
    • Evaluation of reference genes for quantitative RT-PCR in Lolium perenne
    • Ruth C, Martin VG, Hollenbeck T, James E, Dombrowski G (2008) Evaluation of reference genes for quantitative RT-PCR in Lolium perenne. Crop Sci 48: 1881-1887.
    • (2008) Crop Sci. , vol.48 , pp. 1881-1887
    • Ruth, C.1    Martin, V.G.2    Hollenbeck, T.3    James, E.4    Dombrowski, G.5
  • 38
    • 1842505125 scopus 로고    scopus 로고
    • Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics
    • Sadelin A, Wasserman W (2004) Constrained binding site diversity within families of transcription factors enhances pattern discovery bioinformatics. J Mol Biol 338(2): 207-215.
    • (2004) J Mol Biol , vol.338 , Issue.2 , pp. 207-215
    • Sadelin, A.1    Wasserman, W.2
  • 39
    • 16544392329 scopus 로고    scopus 로고
    • Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen
    • Scheible WR, Morcuende R, Czechowski T, Fritz C, Osuna D, Palacios-Rojas N, Schindelasch D, Thimm O, Udvardi MK, Stitt M (2004) Genome-wide reprogramming of primary and secondary metabolism, protein synthesis, cellular growth processes, and the regulatory infrastructure of Arabidopsis in response to nitrogen. Plant Physiol 136: 2483-2499.
    • (2004) Plant Physiol , vol.136 , pp. 2483-2499
    • Scheible, W.R.1    Morcuende, R.2    Czechowski, T.3    Fritz, C.4    Osuna, D.5    Palacios-Rojas, N.6    Schindelasch, D.7    Thimm, O.8    Udvardi, M.K.9    Stitt, M.10
  • 41
    • 70450202952 scopus 로고    scopus 로고
    • Auxin homeostasis during lateral root development under drought condition
    • Seo PJ, Park CM (2009) Auxin homeostasis during lateral root development under drought condition. Plant Signal Behav 4(10): 1002-1004.
    • (2009) Plant Signal Behav , vol.4 , Issue.10 , pp. 1002-1004
    • Seo, P.J.1    Park, C.M.2
  • 42
    • 70349225927 scopus 로고    scopus 로고
    • The MYB96 transcription factor mediates abscisic acid signaling during drought stress response in Arabidopsis
    • Seo PJ, Xiang F, Qiao M, Park JY, Lee YN, Kim SG, Lee YH, Park WJ, Park CM (2009) The MYB96 transcription factor mediates abscisic acid signaling during drought stress response in Arabidopsis. Plant Physiol 151: 275-289.
    • (2009) Plant Physiol , vol.151 , pp. 275-289
    • Seo, P.J.1    Xiang, F.2    Qiao, M.3    Park, J.Y.4    Lee, Y.N.5    Kim, S.G.6    Lee, Y.H.7    Park, W.J.8    Park, C.M.9
  • 43
    • 70350023215 scopus 로고    scopus 로고
    • Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation
    • Shaw LM, McIntyre CL, Gresshoff PM, Xue GP (2009) Members of the Dof transcription factor family in Triticum aestivum are associated with light-mediated gene regulation. Funct Integr Genomics 9: 485-498.
    • (2009) Funct Integr Genomics , vol.9 , pp. 485-498
    • Shaw, L.M.1    McIntyre, C.L.2    Gresshoff, P.M.3    Xue, G.P.4
  • 44
    • 4544236638 scopus 로고    scopus 로고
    • Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter
    • Tran LSP, Nakashima K, Sakuma Y, Simpson SD, Fujita Y, Maruyama K, Fujita M, Seki M, Shinozaki K, Yamaguchi-Shinozaki K (2004) Isolation and functional analysis of Arabidopsis stress-inducible NAC transcription factors that bind to a drought-responsive cis-element in the early responsive to dehydration stress 1 promoter. Plant Cell 16: 2481-2498.
    • (2004) Plant Cell , vol.16 , pp. 2481-2498
    • Tran, L.S.P.1    Nakashima, K.2    Sakuma, Y.3    Simpson, S.D.4    Fujita, Y.5    Maruyama, K.6    Fujita, M.7    Seki, M.8    Shinozaki, K.9    Yamaguchi-Shinozaki, K.10
  • 45
    • 1542351018 scopus 로고    scopus 로고
    • Three Arabidopsis MBF1 homologs with distinct expression profiles play roles as transcriptional co-activators
    • Tsuda K, Tsuji T, Hirose S, Yamazaki K (2004) Three Arabidopsis MBF1 homologs with distinct expression profiles play roles as transcriptional co-activators. Plant Cell Physiol 45(2): 225-231.
    • (2004) Plant Cell Physiol , vol.45 , Issue.2 , pp. 225-231
    • Tsuda, K.1    Tsuji, T.2    Hirose, S.3    Yamazaki, K.4
  • 47
    • 67650762223 scopus 로고    scopus 로고
    • Differential gene expression in response to drought stress in maize seedling
    • Xiao-feng D, Feng-ling FU, Na NI, Wan-chen LI (2009) Differential gene expression in response to drought stress in maize seedling. Agril Sci China 8(7): 767-776.
    • (2009) Agril Sci China , vol.8 , Issue.7 , pp. 767-776
    • Xiao-Feng, D.1    Feng-Ling, F.U.2    Na, N.I.3    Wan-Chen, L.I.4
  • 48
    • 77951940279 scopus 로고    scopus 로고
    • Transcript profiling of common bean (Phaseolus vulgaris L.) using the genechip soybean genome array: Optimizing analysis by masking biased probes
    • Yang SS, Valdés-López O, Xu WW, Bucciarellil B, Gronwald JW, Hernández G, Vancel CP (2010) Transcript profiling of common bean (Phaseolus vulgaris L.) using the genechip soybean genome array: Optimizing analysis by masking biased probes. BMC Plant Biol 10: 1-58.
    • (2010) BMC Plant Biol , vol.10 , pp. 1-58
    • Yang, S.S.1    Valdés-López, O.2    Xu, W.W.3    Bucciarellil, B.4    Gronwald, J.W.5    Hernández, G.6    Vancel, C.P.7
  • 49
    • 33749379463 scopus 로고    scopus 로고
    • QTL analysis of parameters related to flowering in maize under drought stress and normal irrigation condition
    • Zhang JM, Liu C, Shi YS, Song YC, Bai BZ, Li Y, Wang TY (2004) QTL analysis of parameters related to flowering in maize under drought stress and normal irrigation condition. J Plant Gen Res 5: 161-165.
    • (2004) J Plant Gen Res , vol.5 , pp. 161-165
    • Zhang, J.M.1    Liu, C.2    Shi, Y.S.3    Song, Y.C.4    Bai, B.Z.5    Li, Y.6    Wang, T.Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.