메뉴 건너뛰기




Volumn 275, Issue 11, 2008, Pages 2845-2861

Genome-wide identification, classification, evolutionary expansion and expression analyses of homeobox genes in rice

Author keywords

Abiotic stress; Homeobox genes; Microarray analysis; Reproductive development; Rice (Oryza sativa)

Indexed keywords

HOMEODOMAIN PROTEIN;

EID: 43549083731     PISSN: 1742464X     EISSN: 17424658     Source Type: Journal    
DOI: 10.1111/j.1742-4658.2008.06424.x     Document Type: Article
Times cited : (125)

References (94)
  • 1
    • 0023729682 scopus 로고
    • The sequence specificity of homeodomain-DNA interaction
    • Desplan C, Theis J O'Farrell PH (1988) The sequence specificity of homeodomain-DNA interaction. Cell 54, 1081 1090.
    • (1988) Cell , vol.54 , pp. 1081-1090
    • Desplan, C.1    Theis, J.2    O'Farrell, P.H.3
  • 2
    • 0024997404 scopus 로고
    • Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution
    • Otting G, Qian YQ, Billeter M, Muller M, Affolter M, Gehring WJ Wuthrich K (1990) Protein-DNA contacts in the structure of a homeodomain-DNA complex determined by nuclear magnetic resonance spectroscopy in solution. EMBO J 9, 3085 3092.
    • (1990) EMBO J , vol.9 , pp. 3085-3092
    • Otting, G.1    Qian, Y.Q.2    Billeter, M.3    Muller, M.4    Affolter, M.5    Gehring, W.J.6    Wuthrich, K.7
  • 3
    • 0021451768 scopus 로고
    • A homologous protein-coding sequence in Drosophila homeotic genes and its conservation in other metazoans
    • McGinnis W, Garber RL, Wirz J, Kuroiwa A Gehring WJ (1984) A homologous protein-coding sequence in Drosophila homeotic genes and its conservation in other metazoans. Cell 37, 403 408.
    • (1984) Cell , vol.37 , pp. 403-408
    • McGinnis, W.1    Garber, R.L.2    Wirz, J.3    Kuroiwa, A.4    Gehring, W.J.5
  • 5
    • 0034126807 scopus 로고    scopus 로고
    • Developmental patterning genes and their conserved functions: From model organisms to humans
    • Veraksa A, Del Campo M McGinnis W (2000) Developmental patterning genes and their conserved functions: from model organisms to humans. Mol Genet Metab 69, 85 100.
    • (2000) Mol Genet Metab , vol.69 , pp. 85-100
    • Veraksa, A.1    Del Campo, M.2    McGinnis, W.3
  • 6
    • 0037124365 scopus 로고    scopus 로고
    • Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis
    • Himmelbach A, Hoffmann T, Leube M, Hohener B Grill E (2002) Homeodomain protein ATHB6 is a target of the protein phosphatase ABI1 and regulates hormone responses in Arabidopsis. EMBO J 21, 3029 3038.
    • (2002) EMBO J , vol.21 , pp. 3029-3038
    • Himmelbach, A.1    Hoffmann, T.2    Leube, M.3    Hohener, B.4    Grill, E.5
  • 7
    • 0036954020 scopus 로고    scopus 로고
    • The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis
    • Sawa S, Ohgishi M, Goda H, Higuchi K, Shimada Y, Yoshida S Koshiba T (2002) The HAT2 gene, a member of the HD-Zip gene family, isolated as an auxin inducible gene by DNA microarray screening, affects auxin response in Arabidopsis. Plant J 32, 1011 1022.
    • (2002) Plant J , vol.32 , pp. 1011-1022
    • Sawa, S.1    Ohgishi, M.2    Goda, H.3    Higuchi, K.4    Shimada, Y.5    Yoshida, S.6    Koshiba, T.7
  • 8
    • 0028431008 scopus 로고
    • Plant homeodomain protein involved in transcriptional regulation of a pathogen defense-related gene
    • Korfhage U, Trezzini GF, Meier I, Hahlbrock K Somssich IE (1994) Plant homeodomain protein involved in transcriptional regulation of a pathogen defense-related gene. Plant Cell 6, 695 708.
    • (1994) Plant Cell , vol.6 , pp. 695-708
    • Korfhage, U.1    Trezzini, G.F.2    Meier, I.3    Hahlbrock, K.4    Somssich, I.E.5
  • 9
    • 0032080466 scopus 로고    scopus 로고
    • A new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment
    • Lee YH Chun JY (1998) A new homeodomain-leucine zipper gene from Arabidopsis thaliana induced by water stress and abscisic acid treatment. Plant Mol Biol 37, 377 384.
    • (1998) Plant Mol Biol , vol.37 , pp. 377-384
    • Lee, Y.H.1    Chun, J.Y.2
  • 10
    • 0035312840 scopus 로고    scopus 로고
    • The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning
    • Lee H, Xiong L, Gong Z, Ishitani M, Stevenson B Zhu JK (2001) The Arabidopsis HOS1 gene negatively regulates cold signal transduction and encodes a RING finger protein that displays cold-regulated nucleo-cytoplasmic partitioning. Genes Dev 15, 912 924.
    • (2001) Genes Dev , vol.15 , pp. 912-924
    • Lee, H.1    Xiong, L.2    Gong, Z.3    Ishitani, M.4    Stevenson, B.5    Zhu, J.K.6
  • 12
    • 24944443667 scopus 로고    scopus 로고
    • Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses
    • Luo H, Song F Zheng Z (2005) Overexpression in transgenic tobacco reveals different roles for the rice homeodomain gene OsBIHD1 in biotic and abiotic stress responses. J Exp Bot 56, 2673 2682.
    • (2005) J Exp Bot , vol.56 , pp. 2673-2682
    • Luo, H.1    Song, F.2    Zheng, Z.3
  • 13
    • 0028675708 scopus 로고
    • A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants
    • Lincoln C, Long J, Yamaguchi J, Serikawa K Hake S (1994) A knotted1-like homeobox gene in Arabidopsis is expressed in the vegetative meristem and dramatically alters leaf morphology when overexpressed in transgenic plants. Plant Cell 6, 1859 1876.
    • (1994) Plant Cell , vol.6 , pp. 1859-1876
    • Lincoln, C.1    Long, J.2    Yamaguchi, J.3    Serikawa, K.4    Hake, S.5
  • 14
    • 0028012120 scopus 로고
    • Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot
    • Jackson D, Veit B Hake S (1994) Expression of maize KNOTTED1 related homeobox genes in the shoot apical meristem predicts patterns of morphogenesis in the vegetative shoot. Development 120, 405 413.
    • (1994) Development , vol.120 , pp. 405-413
    • Jackson, D.1    Veit, B.2    Hake, S.3
  • 15
    • 0030070190 scopus 로고    scopus 로고
    • A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis
    • Long JA, Moan EI, Medford JI Barton MK (1996) A member of the KNOTTED class of homeodomain proteins encoded by the STM gene of Arabidopsis. Nature 379, 66 69.
    • (1996) Nature , vol.379 , pp. 66-69
    • Long, J.A.1    Moan, E.I.2    Medford, J.I.3    Barton, M.K.4
  • 17
    • 0027379437 scopus 로고
    • Formation of the shoot apical meristem in Arabidopsis thaliana: An analysis of development in the wild-type and shoot meristemless mutant
    • Barton MK Poethig RS (1993) Formation of the shoot apical meristem in Arabidopsis thaliana: an analysis of development in the wild-type and shoot meristemless mutant. Development 119, 823 831.
    • (1993) Development , vol.119 , pp. 823-831
    • Barton, M.K.1    Poethig, R.S.2
  • 18
    • 0033866303 scopus 로고    scopus 로고
    • Shoot meristem size is dependent on inbred background and presence of the maize homeobox gene, knotted1
    • Vollbrecht E, Reiser L Hake S (2000) Shoot meristem size is dependent on inbred background and presence of the maize homeobox gene, knotted1. Development 127, 3161 3172.
    • (2000) Development , vol.127 , pp. 3161-3172
    • Vollbrecht, E.1    Reiser, L.2    Hake, S.3
  • 19
    • 1242352556 scopus 로고    scopus 로고
    • Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana
    • Haecker A, Gross-Hardt R, Geiges B, Sarkar A, Breuninger H, Herrmann M Laux T (2004) Expression dynamics of WOX genes mark cell fate decisions during early embryonic patterning in Arabidopsis thaliana. Development 131, 657 668.
    • (2004) Development , vol.131 , pp. 657-668
    • Haecker, A.1    Gross-Hardt, R.2    Geiges, B.3    Sarkar, A.4    Breuninger, H.5    Herrmann, M.6    Laux, T.7
  • 20
    • 35848934357 scopus 로고    scopus 로고
    • WOX gene phylogeny in Poaceae: A comparative approach addressing leaf and embryo development
    • Nardmann J, Zimmermann R, Durantini D, Kranz E Werr W (2007) WOX gene phylogeny in Poaceae: a comparative approach addressing leaf and embryo development. Mol Biol Evol 24, 2474 2484.
    • (2007) Mol Biol Evol , vol.24 , pp. 2474-2484
    • Nardmann, J.1    Zimmermann, R.2    Durantini, D.3    Kranz, E.4    Werr, W.5
  • 21
    • 0032444227 scopus 로고    scopus 로고
    • Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem
    • Mayer KF, Schoof H, Haecker A, Lenhard M, Jurgens G Laux T (1998) Role of WUSCHEL in regulating stem cell fate in the Arabidopsis shoot meristem. Cell 95, 805 815.
    • (1998) Cell , vol.95 , pp. 805-815
    • Mayer, K.F.1    Schoof, H.2    Haecker, A.3    Lenhard, M.4    Jurgens, G.5    Laux, T.6
  • 22
    • 0041851251 scopus 로고    scopus 로고
    • Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem
    • Kamiya N, Nagasaki H, Morikami A, Sato Y Matsuoka M (2003) Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiescent center in the root apical meristem. Plant J 35, 429 441.
    • (2003) Plant J , vol.35 , pp. 429-441
    • Kamiya, N.1    Nagasaki, H.2    Morikami, A.3    Sato, Y.4    Matsuoka, M.5
  • 23
    • 0028864594 scopus 로고
    • The BELL1 gene encodes a homeodomain protein involved in pattern formation in the Arabidopsis ovule primordium
    • Reiser L, Modrusan Z, Margossian L, Samach A, Ohad N, Haughn GW Fischer RL (1995) The BELL1 gene encodes a homeodomain protein involved in pattern formation in the Arabidopsis ovule primordium. Cell 83, 735 742.
    • (1995) Cell , vol.83 , pp. 735-742
    • Reiser, L.1    Modrusan, Z.2    Margossian, L.3    Samach, A.4    Ohad, N.5    Haughn, G.W.6    Fischer, R.L.7
  • 25
    • 0041827272 scopus 로고    scopus 로고
    • Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER
    • Byrne ME, Groover AT, Fontana JR Martienssen RA (2003) Phyllotactic pattern and stem cell fate are determined by the Arabidopsis homeobox gene BELLRINGER. Development 130, 3941 3950.
    • (2003) Development , vol.130 , pp. 3941-3950
    • Byrne, M.E.1    Groover, A.T.2    Fontana, J.R.3    Martienssen, R.A.4
  • 26
    • 0037700757 scopus 로고    scopus 로고
    • Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation
    • Chen H, Rosin FM, Prat S Hannapel DJ (2003) Interacting transcription factors from the three-amino acid loop extension superclass regulate tuber formation. Plant Physiol 132, 1391 1404.
    • (2003) Plant Physiol , vol.132 , pp. 1391-1404
    • Chen, H.1    Rosin, F.M.2    Prat, S.3    Hannapel, D.J.4
  • 27
    • 0042922504 scopus 로고    scopus 로고
    • The interaction of two homeobox genes, BREVIPEDICELLUS and PENNYWISE, regulates internode patterning in the Arabidopsis inflorescence
    • Smith HM Hake S (2003) The interaction of two homeobox genes, BREVIPEDICELLUS and PENNYWISE, regulates internode patterning in the Arabidopsis inflorescence. Plant Cell 15, 1717 1727.
    • (2003) Plant Cell , vol.15 , pp. 1717-1727
    • Smith, H.M.1    Hake, S.2
  • 28
    • 0029088028 scopus 로고
    • The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana
    • Talbert PB, Adler HT, Parks DW Comai L (1995) The REVOLUTA gene is necessary for apical meristem development and for limiting cell divisions in the leaves and stems of Arabidopsis thaliana. Development 121, 2723 2735.
    • (1995) Development , vol.121 , pp. 2723-2735
    • Talbert, P.B.1    Adler, H.T.2    Parks, D.W.3    Comai, L.4
  • 29
    • 0031661098 scopus 로고    scopus 로고
    • Leaf polarity and meristem formation in Arabidopsis
    • McConnell JR Barton MK (1998) Leaf polarity and meristem formation in Arabidopsis. Development 125, 2935 2942.
    • (1998) Development , vol.125 , pp. 2935-2942
    • McConnell, J.R.1    Barton, M.K.2
  • 30
    • 0035822096 scopus 로고    scopus 로고
    • Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots
    • McConnell JR, Emery J, Eshed Y, Bao N, Bowman J Barton MK (2001) Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots. Nature 411, 709 713.
    • (2001) Nature , vol.411 , pp. 709-713
    • McConnell, J.R.1    Emery, J.2    Eshed, Y.3    Bao, N.4    Bowman, J.5    Barton, M.K.6
  • 33
    • 22144438066 scopus 로고    scopus 로고
    • Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development
    • Prigge MJ, Otsuga D, Alonso JM, Ecker JR, Drews GN Clark SE (2005) Class III homeodomain-leucine zipper gene family members have overlapping, antagonistic, and distinct roles in Arabidopsis development. Plant Cell 17, 61 76.
    • (2005) Plant Cell , vol.17 , pp. 61-76
    • Prigge, M.J.1    Otsuga, D.2    Alonso, J.M.3    Ecker, J.R.4    Drews, G.N.5    Clark, S.E.6
  • 34
    • 33646904813 scopus 로고    scopus 로고
    • The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development
    • Tan QK Irish VF (2006) The Arabidopsis zinc finger-homeodomain genes encode proteins with unique biochemical properties that are coordinately expressed during floral development. Plant Physiol 140, 1095 1108.
    • (2006) Plant Physiol , vol.140 , pp. 1095-1108
    • Tan, Q.K.1    Irish, V.F.2
  • 35
    • 0032955931 scopus 로고    scopus 로고
    • Characterization of homeodomain-leucine zipper genes in the fern Ceratopteris richardii and the evolution of the homeodomain-leucine zipper gene family in vascular plants
    • Aso K, Kato M, Banks JA Hasebe M (1999) Characterization of homeodomain-leucine zipper genes in the fern Ceratopteris richardii and the evolution of the homeodomain-leucine zipper gene family in vascular plants. Mol Biol Evol 16, 544 552.
    • (1999) Mol Biol Evol , vol.16 , pp. 544-552
    • Aso, K.1    Kato, M.2    Banks, J.A.3    Hasebe, M.4
  • 36
    • 0035057514 scopus 로고    scopus 로고
    • Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants
    • Sakakibara K, Nishiyama T, Kato M Hasebe M (2001) Isolation of homeodomain-leucine zipper genes from the moss Physcomitrella patens and the evolution of homeodomain-leucine zipper genes in land plants. Mol Biol Evol 18, 491 502.
    • (2001) Mol Biol Evol , vol.18 , pp. 491-502
    • Sakakibara, K.1    Nishiyama, T.2    Kato, M.3    Hasebe, M.4
  • 37
    • 0028144792 scopus 로고
    • Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families
    • Schena M Davis RW (1994) Structure of homeobox-leucine zipper genes suggests a model for the evolution of gene families. Proc Natl Acad Sci USA 91, 8393 8397.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 8393-8397
    • Schena, M.1    Davis, R.W.2
  • 38
    • 0032901292 scopus 로고    scopus 로고
    • START: A lipid-binding domain in StAR, HD-ZIP and signalling proteins
    • Ponting CP Aravind L (1999) START: a lipid-binding domain in StAR, HD-ZIP and signalling proteins. Trends Biochem Sci 24, 130 132.
    • (1999) Trends Biochem Sci , vol.24 , pp. 130-132
    • Ponting, C.P.1    Aravind, L.2
  • 39
    • 4844226474 scopus 로고    scopus 로고
    • START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors
    • Schrick K, Nguyen D, Karlowski WM Mayer KF (2004) START lipid/sterol-binding domains are amplified in plants and are predominantly associated with homeodomain transcription factors. Genome Biol 5, R41.
    • (2004) Genome Biol , vol.5
    • Schrick, K.1    Nguyen, D.2    Karlowski, W.M.3    Mayer, K.F.4
  • 40
    • 33745442033 scopus 로고    scopus 로고
    • MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins
    • Mukherjee K Burglin TR (2006) MEKHLA, a novel domain with similarity to PAS domains, is fused to plant homeodomain-leucine zipper III proteins. Plant Physiol 140, 1142 1150.
    • (2006) Plant Physiol , vol.140 , pp. 1142-1150
    • Mukherjee, K.1    Burglin, T.R.2
  • 41
    • 0036143156 scopus 로고    scopus 로고
    • Systematic identification of novel protein domain families associated with nuclear functions
    • Doerks T, Copley RR, Schultz J, Ponting CP Bork P (2002) Systematic identification of novel protein domain families associated with nuclear functions. Genome Res 12, 47 56.
    • (2002) Genome Res , vol.12 , pp. 47-56
    • Doerks, T.1    Copley, R.R.2    Schultz, J.3    Ponting, C.P.4    Bork, P.5
  • 42
    • 1842339865 scopus 로고    scopus 로고
    • Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals
    • Burglin TR (1997) Analysis of TALE superclass homeobox genes (MEIS, PBC, KNOX, Iroquois, TGIF) reveals a novel domain conserved between plants and animals. Nucleic Acids Res 25, 4173 4180.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4173-4180
    • Burglin, T.R.1
  • 43
    • 0035039035 scopus 로고    scopus 로고
    • Expression of a class 1 knotted1-like homeobox gene is down-regulated in pea compound leaf primordia
    • Hofer J, Gourlay C, Michael A Ellis TH (2001) Expression of a class 1 knotted1-like homeobox gene is down-regulated in pea compound leaf primordia. Plant Mol Biol 45, 387 398.
    • (2001) Plant Mol Biol , vol.45 , pp. 387-398
    • Hofer, J.1    Gourlay, C.2    Michael, A.3    Ellis, T.H.4
  • 44
    • 0034811010 scopus 로고    scopus 로고
    • Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15
    • Nagasaki H, Sakamoto T, Sato Y Matsuoka M (2001) Functional analysis of the conserved domains of a rice KNOX homeodomain protein, OSH15. Plant Cell 13, 2085 2098.
    • (2001) Plant Cell , vol.13 , pp. 2085-2098
    • Nagasaki, H.1    Sakamoto, T.2    Sato, Y.3    Matsuoka, M.4
  • 45
    • 33750939858 scopus 로고    scopus 로고
    • The shoot stem cell niche in angiosperms: Expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution
    • Nardmann J Werr W (2006) The shoot stem cell niche in angiosperms: expression patterns of WUS orthologues in rice and maize imply major modifications in the course of mono- and dicot evolution. Mol Biol Evol 23, 2492 2504.
    • (2006) Mol Biol Evol , vol.23 , pp. 2492-2504
    • Nardmann, J.1    Werr, W.2
  • 46
    • 0035091497 scopus 로고    scopus 로고
    • Characterization of a novel class of plant homeodomain proteins that bind to the C4 phosphoenolpyruvate carboxylase gene of Flaveria trinervia
    • Windhovel A, Hein I, Dabrowa R Stockhaus J (2001) Characterization of a novel class of plant homeodomain proteins that bind to the C4 phosphoenolpyruvate carboxylase gene of Flaveria trinervia. Plant Mol Biol 45, 201 214.
    • (2001) Plant Mol Biol , vol.45 , pp. 201-214
    • Windhovel, A.1    Hein, I.2    Dabrowa, R.3    Stockhaus, J.4
  • 47
    • 0027630839 scopus 로고
    • HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region
    • Schindler U, Beckmann H Cashmore AR (1993) HAT3.1, a novel Arabidopsis homeodomain protein containing a conserved cysteine-rich region. Plant J 4, 137 150.
    • (1993) Plant J , vol.4 , pp. 137-150
    • Schindler, U.1    Beckmann, H.2    Cashmore, A.R.3
  • 48
    • 0028861418 scopus 로고
    • The PHD finger: Implications for chromatin-mediated transcriptional regulation
    • Aasland R, Gibson TJ Stewart AF (1995) The PHD finger: implications for chromatin-mediated transcriptional regulation. Trends Biochem Sci 20, 56 59.
    • (1995) Trends Biochem Sci , vol.20 , pp. 56-59
    • Aasland, R.1    Gibson, T.J.2    Stewart, A.F.3
  • 50
    • 33846573830 scopus 로고    scopus 로고
    • Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis
    • Campbell MA, Haas BJ, Hamilton JP, Mount SM Buell CR (2006) Comprehensive analysis of alternative splicing in rice and comparative analyses with Arabidopsis. BMC Genomics 7, 327.
    • (2006) BMC Genomics , vol.7 , pp. 327
    • Campbell, M.A.1    Haas, B.J.2    Hamilton, J.P.3    Mount, S.M.4    Buell, C.R.5
  • 51
    • 33646484347 scopus 로고    scopus 로고
    • Genome-wide comparative analysis of alternative splicing in plants
    • Wang BB Brendel V (2006) Genome-wide comparative analysis of alternative splicing in plants. Proc Natl Acad Sci USA 103, 7175 7180.
    • (2006) Proc Natl Acad Sci USA , vol.103 , pp. 7175-7180
    • Wang, B.B.1    Brendel, V.2
  • 52
    • 0037123355 scopus 로고    scopus 로고
    • Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice
    • Ito Y, Hirochika H Kurata N (2002) Organ-specific alternative transcripts of KNOX family class 2 homeobox genes of rice. Gene 288, 41 47.
    • (2002) Gene , vol.288 , pp. 41-47
    • Ito, Y.1    Hirochika, H.2    Kurata, N.3
  • 53
    • 29544446926 scopus 로고    scopus 로고
    • Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa)
    • Jain M, Kaur N, Garg R, Thakur JK, Tyagi AK Khurana JP (2006) Structure and expression analysis of early auxin-responsive Aux/IAA gene family in rice (Oryza sativa). Funct Integr Genomics 6, 47 59.
    • (2006) Funct Integr Genomics , vol.6 , pp. 47-59
    • Jain, M.1    Kaur, N.2    Garg, R.3    Thakur, J.K.4    Tyagi, A.K.5    Khurana, J.P.6
  • 54
    • 33748776573 scopus 로고    scopus 로고
    • Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa)
    • Jain M, Tyagi AK Khurana JP (2006) Genome-wide analysis, evolutionary expansion, and expression of early auxin-responsive SAUR gene family in rice (Oryza sativa). Genomics 88, 360 371.
    • (2006) Genomics , vol.88 , pp. 360-371
    • Jain, M.1    Tyagi, A.K.2    Khurana, J.P.3
  • 55
    • 34249819663 scopus 로고    scopus 로고
    • F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress
    • Jain M, Nijhawan A, Arora R, Agarwal P, Ray S, Sharma P, Kapoor S, Tyagi AK Khurana JP (2007) F-box proteins in rice. Genome-wide analysis, classification, temporal and spatial gene expression during panicle and seed development, and regulation by light and abiotic stress. Plant Physiol 143, 1467 1483.
    • (2007) Plant Physiol , vol.143 , pp. 1467-1483
    • Jain, M.1    Nijhawan, A.2    Arora, R.3    Agarwal, P.4    Ray, S.5    Sharma, P.6    Kapoor, S.7    Tyagi, A.K.8    Khurana, J.P.9
  • 56
    • 33644843195 scopus 로고    scopus 로고
    • Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family
    • Zhang S, Chen C, Li L, Meng L, Singh J, Jiang N, Deng XW, He ZH Lemaux PG (2005) Evolutionary expansion, gene structure, and expression of the rice wall-associated kinase gene family. Plant Physiol 139, 1107 1124.
    • (2005) Plant Physiol , vol.139 , pp. 1107-1124
    • Zhang, S.1    Chen, C.2    Li, L.3    Meng, L.4    Singh, J.5    Jiang, N.6    Deng, X.W.7    He, Z.H.8    Lemaux, P.G.9
  • 58
    • 33644647217 scopus 로고    scopus 로고
    • Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage
    • Walia H, Wilson C, Condamine P, Liu X, Ismail AM, Zeng L, Wanamaker SI, Mandal J, Xu J, Cui X et al. (2005) Comparative transcriptional profiling of two contrasting rice genotypes under salinity stress during the vegetative growth stage. Plant Physiol 139, 822 835.
    • (2005) Plant Physiol , vol.139 , pp. 822-835
    • Walia, H.1    Wilson, C.2    Condamine, P.3    Liu, X.4    Ismail, A.M.5    Zeng, L.6    Wanamaker, S.I.7    Mandal, J.8    Xu, J.9    Cui, X.10
  • 60
    • 33847305025 scopus 로고    scopus 로고
    • Genome-wide transcriptional analysis of salinity stressed japonica and indica rice genotypes during panicle initiation stage
    • Walia H, Wilson C, Zeng L, Ismail AM, Condamine P Close TJ (2007) Genome-wide transcriptional analysis of salinity stressed japonica and indica rice genotypes during panicle initiation stage. Plant Mol Biol 63, 609 623.
    • (2007) Plant Mol Biol , vol.63 , pp. 609-623
    • Walia, H.1    Wilson, C.2    Zeng, L.3    Ismail, A.M.4    Condamine, P.5    Close, T.J.6
  • 61
  • 62
    • 41149181428 scopus 로고    scopus 로고
    • Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress
    • Jain M, Tyagi AK Khurana JP (2008) Differential gene expression of rice two-component signaling elements during reproductive development and regulation by abiotic stress. Funct Integr Genomics 8, 175 180.
    • (2008) Funct Integr Genomics , vol.8 , pp. 175-180
    • Jain, M.1    Tyagi, A.K.2    Khurana, J.P.3
  • 63
    • 38949124519 scopus 로고    scopus 로고
    • A genomic survey and gene expression analysis of basic leucine zipper (bZIP) transcription factor family in rice
    • Nijhawan A, Jain M, Tyagi AK Khurana JP (2008) A genomic survey and gene expression analysis of basic leucine zipper (bZIP) transcription factor family in rice. Plant Physiol 146, 333 350.
    • (2008) Plant Physiol , vol.146 , pp. 333-350
    • Nijhawan, A.1    Jain, M.2    Tyagi, A.K.3    Khurana, J.P.4
  • 66
    • 0000131020 scopus 로고
    • Hierarchical regulation of organ differentiation during embryogenesis in rice
    • Kitano H, Tamura Y, Satoh H Nagato Y (1993) Hierarchical regulation of organ differentiation during embryogenesis in rice. Plant J 3, 607 610.
    • (1993) Plant J , vol.3 , pp. 607-610
    • Kitano, H.1    Tamura, Y.2    Satoh, H.3    Nagato, Y.4
  • 68
    • 0030018198 scopus 로고    scopus 로고
    • How is embryo size genetically regulated in rice?
    • Hong SK, Kitano H, Satoh H Nagato Y (1996) How is embryo size genetically regulated in rice? Development 122, 2051 2058.
    • (1996) Development , vol.122 , pp. 2051-2058
    • Hong, S.K.1    Kitano, H.2    Satoh, H.3    Nagato, Y.4
  • 69
    • 0033197494 scopus 로고    scopus 로고
    • Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development
    • Sentoku N, Sato Y, Kurata N, Ito Y, Kitano H Matsuoka M (1999) Regional expression of the rice KN1-type homeobox gene family during embryo, shoot, and flower development. Plant Cell 11, 1651 1664.
    • (1999) Plant Cell , vol.11 , pp. 1651-1664
    • Sentoku, N.1    Sato, Y.2    Kurata, N.3    Ito, Y.4    Kitano, H.5    Matsuoka, M.6
  • 70
    • 0029817455 scopus 로고    scopus 로고
    • A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis
    • Sato Y, Hong SK, Tagiri A, Kitano H, Yamamoto N, Nagato Y Matsuoka M (1996) A rice homeobox gene, OSH1, is expressed before organ differentiation in a specific region during early embryogenesis. Proc Natl Acad Sci USA 93, 8117 8122.
    • (1996) Proc Natl Acad Sci USA , vol.93 , pp. 8117-8122
    • Sato, Y.1    Hong, S.K.2    Tagiri, A.3    Kitano, H.4    Yamamoto, N.5    Nagato, Y.6    Matsuoka, M.7
  • 71
    • 0032876289 scopus 로고    scopus 로고
    • Initiation of shoot apical meristem in rice: Characterization of four SHOOTLESS genes
    • Satoh N, Hong SK, Nishimura A, Matsuoka M, Kitano H Nagato Y (1999) Initiation of shoot apical meristem in rice: characterization of four SHOOTLESS genes. Development 126, 3629 3636.
    • (1999) Development , vol.126 , pp. 3629-3636
    • Satoh, N.1    Hong, S.K.2    Nishimura, A.3    Matsuoka, M.4    Kitano, H.5    Nagato, Y.6
  • 72
    • 0036023468 scopus 로고    scopus 로고
    • Involvement of homeobox genes in early body plan of monocot
    • Ito M, Sato Y Matsuoka M (2002) Involvement of homeobox genes in early body plan of monocot. Int Rev Cytol 218, 1 35.
    • (2002) Int Rev Cytol , vol.218 , pp. 1-35
    • Ito, M.1    Sato, Y.2    Matsuoka, M.3
  • 73
    • 0036008981 scopus 로고    scopus 로고
    • Position dependent expression of GL2-type homeobox gene, Roc1: Significance for protoderm differentiation and radial pattern formation in early rice embryogenesis
    • Ito M, Sentoku N, Nishimura A, Hong SK, Sato Y Matsuoka M (2002) Position dependent expression of GL2-type homeobox gene, Roc1: significance for protoderm differentiation and radial pattern formation in early rice embryogenesis. Plant J 29, 497 507.
    • (2002) Plant J , vol.29 , pp. 497-507
    • Ito, M.1    Sentoku, N.2    Nishimura, A.3    Hong, S.K.4    Sato, Y.5    Matsuoka, M.6
  • 75
    • 34547884302 scopus 로고    scopus 로고
    • Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice
    • Li M, Xu W, Yang W, Kong Z Xue Y (2007) Genome-wide gene expression profiling reveals conserved and novel molecular functions of the stigma in rice. Plant Physiol 144, 1797 1812.
    • (2007) Plant Physiol , vol.144 , pp. 1797-1812
    • Li, M.1    Xu, W.2    Yang, W.3    Kong, Z.4    Xue, Y.5
  • 76
    • 0036845822 scopus 로고    scopus 로고
    • Splitting pairs: The diverging fates of duplicated genes
    • Prince VE Pickett FB (2002) Splitting pairs: the diverging fates of duplicated genes. Nat Rev Genet 3, 827 837.
    • (2002) Nat Rev Genet , vol.3 , pp. 827-837
    • Prince, V.E.1    Pickett, F.B.2
  • 77
    • 15544389841 scopus 로고    scopus 로고
    • Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution
    • He X Zhang J (2005) Rapid subfunctionalization accompanied by prolonged and substantial neofunctionalization in duplicate gene evolution. Genetics 169, 1157 1164.
    • (2005) Genetics , vol.169 , pp. 1157-1164
    • He, X.1    Zhang, J.2
  • 78
    • 0030210460 scopus 로고    scopus 로고
    • The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid
    • Soderman E, Mattsson J Engstrom P (1996) The Arabidopsis homeobox gene ATHB-7 is induced by water deficit and by abscisic acid. Plant J 10, 375 381.
    • (1996) Plant J , vol.10 , pp. 375-381
    • Soderman, E.1    Mattsson, J.2    Engstrom, P.3
  • 79
    • 0344994680 scopus 로고    scopus 로고
    • The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions
    • Soderman E, Hjellstrom M, Fahleson J Engstrom P (1999) The HD-Zip gene ATHB6 in Arabidopsis is expressed in developing leaves, roots and carpels and up-regulated by water deficit conditions. Plant Mol Biol 40, 1073 1083.
    • (1999) Plant Mol Biol , vol.40 , pp. 1073-1083
    • Soderman, E.1    Hjellstrom, M.2    Fahleson, J.3    Engstrom, P.4
  • 80
    • 0035984181 scopus 로고    scopus 로고
    • Characterization of five novel dehydration-responsive homeodomain leucine zipper genes from the resurrection plant Craterostigma plantagineum
    • Deng X, Phillips J, Meijer AH, Salamini F Bartels D (2002) Characterization of five novel dehydration-responsive homeodomain leucine zipper genes from the resurrection plant Craterostigma plantagineum. Plant Mol Biol 49, 601 610.
    • (2002) Plant Mol Biol , vol.49 , pp. 601-610
    • Deng, X.1    Phillips, J.2    Meijer, A.H.3    Salamini, F.4    Bartels, D.5
  • 81
    • 0036225818 scopus 로고    scopus 로고
    • Hahb-4, a homeobox-leucine zipper gene potentially involved in abscisic acid-dependent responses to water stress in sunflower
    • Gago GM, Almoguera C, Jordano J, Gonzalez DH Chan RL (2002) Hahb-4, a homeobox-leucine zipper gene potentially involved in abscisic acid-dependent responses to water stress in sunflower. Plant Cell Environ 25, 633 640.
    • (2002) Plant Cell Environ , vol.25 , pp. 633-640
    • Gago, G.M.1    Almoguera, C.2    Jordano, J.3    Gonzalez, D.H.4    Chan, R.L.5
  • 82
    • 31444434151 scopus 로고    scopus 로고
    • Brassica napus L. homeodomain leucine zipper gene BnHB6 responds to abiotic and biotic stresses
    • Yu S-W, Zhang L-D, Zuo K-J, Tang D-Q, Sun X-F Tang K-X (2005) Brassica napus L. homeodomain leucine zipper gene BnHB6 responds to abiotic and biotic stresses. J Integr Plant Biol 47, 1236 1248.
    • (2005) J Integr Plant Biol , vol.47 , pp. 1236-1248
    • Yu, S.-W.1    Zhang, L.-D.2    Zuo, K.-J.3    Tang, D.-Q.4    Sun, X.-F.5    Tang, K.-X.6
  • 83
    • 0036010572 scopus 로고    scopus 로고
    • Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses
    • Chen W, Provart NJ, Glazebrook J, Katagiri F, Chang HS, Eulgem T, Mauch F, Luan S, Zou G, Whitham SA et al. (2002) Expression profile matrix of Arabidopsis transcription factor genes suggests their putative functions in response to environmental stresses. Plant Cell 14, 559 574.
    • (2002) Plant Cell , vol.14 , pp. 559-574
    • Chen, W.1    Provart, N.J.2    Glazebrook, J.3    Katagiri, F.4    Chang, H.S.5    Eulgem, T.6    Mauch, F.7    Luan, S.8    Zou, G.9    Whitham, S.A.10
  • 84
    • 0036779318 scopus 로고    scopus 로고
    • Phospholipase D in hormonal and stress signaling
    • Wang X (2002) Phospholipase D in hormonal and stress signaling. Curr Opin Plant Biol 5, 408 414.
    • (2002) Curr Opin Plant Biol , vol.5 , pp. 408-414
    • Wang, X.1
  • 85
    • 0038271908 scopus 로고    scopus 로고
    • Phosphatidic acid produced by phospholipase D is required for tobacco pollen tube growth
    • Potocky M, Elias M, Profotova B, Novotna Z, Valentova O Zarsky V (2003) Phosphatidic acid produced by phospholipase D is required for tobacco pollen tube growth. Planta 217, 122 130.
    • (2003) Planta , vol.217 , pp. 122-130
    • Potocky, M.1    Elias, M.2    Profotova, B.3    Novotna, Z.4    Valentova, O.5    Zarsky, V.6
  • 86
    • 1342308490 scopus 로고    scopus 로고
    • Osmotically induced cell swelling versus cell shrinking elicits specific changes in phospholipid signals in tobacco pollen tubes
    • Zonia L Munnik T (2004) Osmotically induced cell swelling versus cell shrinking elicits specific changes in phospholipid signals in tobacco pollen tubes. Plant Physiol 134, 813 823.
    • (2004) Plant Physiol , vol.134 , pp. 813-823
    • Zonia, L.1    Munnik, T.2
  • 88
    • 26444541664 scopus 로고    scopus 로고
    • Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.)
    • Lan L, Li M, Lai Y, Xu W, Kong Z, Ying K, Han B Xue Y (2005) Microarray analysis reveals similarities and variations in genetic programs controlling pollination/fertilization and stress responses in rice (Oryza sativa L.). Plant Mol Biol 59, 151 164.
    • (2005) Plant Mol Biol , vol.59 , pp. 151-164
    • Lan, L.1    Li, M.2    Lai, Y.3    Xu, W.4    Kong, Z.5    Ying, K.6    Han, B.7    Xue, Y.8
  • 91
    • 0031574072 scopus 로고    scopus 로고
    • The clustal_x windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson JD, Gibson TJ, Plewniak F, Jeanmougin F Higgins DG (1997) The clustal_x windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876 4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 92
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406 425.
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 93
    • 0029853148 scopus 로고    scopus 로고
    • WWW-query: An on-line retrieval system for biological sequence banks
    • Perriere G Gouy M (1996) WWW-query: an on-line retrieval system for biological sequence banks. Biochimie 78, 364 369.
    • (1996) Biochimie , vol.78 , pp. 364-369
    • Perriere, G.1    Gouy, M.2
  • 94
    • 33646854724 scopus 로고    scopus 로고
    • Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR
    • Jain M, Nijhawan A, Tyagi AK Khurana JP (2006) Validation of housekeeping genes as internal control for studying gene expression in rice by quantitative real-time PCR. Biochem Biophys Res Commun 345, 646 651.
    • (2006) Biochem Biophys Res Commun , vol.345 , pp. 646-651
    • Jain, M.1    Nijhawan, A.2    Tyagi, A.K.3    Khurana, J.P.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.