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Volumn 19, Issue 5, 2012, Pages 423-433

Efficient detection, quantification and enrichment of subtle allelic alterations

Author keywords

gene targeting; heteroduplex analysis; polyacrylamide gel electrophoresis; transcription activator like effector nucleases; zinc finger nucleases

Indexed keywords

AGAROSE; ENDONUCLEASE; GENOMIC DNA; HETERODUPLEX; ZINC FINGER NUCLEASE;

EID: 84867700973     PISSN: 13402838     EISSN: 17561663     Source Type: Journal    
DOI: 10.1093/dnares/dss023     Document Type: Review
Times cited : (49)

References (43)
  • 1
    • 19544371373 scopus 로고    scopus 로고
    • Gene targeting in mice: Functional analysis of the mammalian genome for the twenty-first century
    • Capecchi, M.R. 2005, Gene targeting in mice: functional analysis of the mammalian genome for the twenty-first century, Nat. Rev. Genet., 6, 507-12.
    • (2005) Nat. Rev. Genet , vol.6 , pp. 507-512
    • Capecchi, M.R.1
  • 2
    • 53149137486 scopus 로고    scopus 로고
    • Impaired DNA damage response, genome instability, and tumorigenesis in SIRT1 mutant mice
    • Wang, R.H., Sengupta, K., Li, C., et al. 2008, Impaired DNA damage response, genome instability, and tumorigenesis in SIRT1 mutant mice, Cancer Cell, 14, 312-23.
    • (2008) Cancer Cell , vol.14 , pp. 312-323
    • Wang, R.H.1    Sengupta, K.2    Li, C.3
  • 3
    • 33846002394 scopus 로고    scopus 로고
    • A mouse for all reasons
    • Collins, F.S., Rossant, J. and Wurst, W. 2007, A mouse for all reasons, Cell, 128, 9-13.
    • (2007) Cell , vol.128 , pp. 9-13
    • Collins, F.S.1    Rossant, J.2    Wurst, W.3
  • 4
    • 77956524118 scopus 로고    scopus 로고
    • Production of p53 gene knockout rats by homologous recombination in embryonic stem cells
    • Tong, C., Li, P., Wu, N.L., Yan, Y. and Ying, Q.-L. 2010, Production of p53 gene knockout rats by homologous recombination in embryonic stem cells, Nature, 467, 211-3.
    • (2010) Nature , vol.467 , pp. 211-213
    • Tong, C.1    Li, P.2    Wu, N.L.3    Yan, Y.4    Ying, Q.-L.5
  • 5
    • 80053022290 scopus 로고    scopus 로고
    • A TALE of two nucleases: Gene targeting for the masses?
    • Clark, K.J., Voytas, D.F. and Ekker, S.C. 2011, A TALE of two nucleases: gene targeting for the masses?, Zebrafish, 8, 147-9.
    • (2011) Zebrafish , vol.8 , pp. 147-149
    • Clark, K.J.1    Voytas, D.F.2    Ekker, S.C.3
  • 6
    • 44949155482 scopus 로고    scopus 로고
    • Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases
    • Doyon, Y., McCammon, J.M., Miller, J.C., et al. 2008, Heritable targeted gene disruption in zebrafish using designed zinc-finger nucleases, Nat. Biotechol., 26, 702-8.
    • (2008) Nat. Biotechol , vol.26 , pp. 702-708
    • Doyon, Y.1    McCammon, J.M.2    Miller, J.C.3
  • 7
    • 84862682521 scopus 로고    scopus 로고
    • Targeted disruption of exogenous EGFP gene in medaka using zincfinger nucleases
    • Ansai, S., Ochiai, H., Kanie, Y., et al. 2012, Targeted disruption of exogenous EGFP gene in medaka using zincfinger nucleases, Dev. Growth Differ., 54, 546-56.
    • (2012) Dev. Growth Differ , vol.54 , pp. 546-556
    • Ansai, S.1    Ochiai, H.2    Kanie, Y.3
  • 8
    • 79961185942 scopus 로고    scopus 로고
    • Heritable gene targeting in zebrafish using customized TALENs
    • Huang, P., Xiao, A., Zhou, M., Zhu, Z., Lin, S. and Zhang, B. 2011, Heritable gene targeting in zebrafish using customized TALENs, Nat. Biotechnol., 29, 699-700.
    • (2011) Nat. Biotechnol , vol.29 , pp. 699-700
    • Huang, P.1    Xiao, A.2    Zhou, M.3    Zhu, Z.4    Lin, S.5    Zhang, B.6
  • 9
    • 79961192836 scopus 로고    scopus 로고
    • Targeted gene disruption in somatic zebrafish cells using engineered TALENs
    • Sander, J.D., Cade, L., Khayter, C., et al. 2011, Targeted gene disruption in somatic zebrafish cells using engineered TALENs, Nat. Biotechnol., 29, 697-8.
    • (2011) Nat. Biotechnol , vol.29 , pp. 697-698
    • Sander, J.D.1    Cade, L.2    Khayter, C.3
  • 10
    • 0034951142 scopus 로고    scopus 로고
    • Double-strand-breakinduced homologous recombination in mammalian cells
    • Johnson, R.D. and Jasin, M. 2001, Double-strand-breakinduced homologous recombination in mammalian cells, Biochem. Soc. Trans., 29, 196-201.
    • (2001) Biochem. Soc. Trans , vol.29 , pp. 196-201
    • Johnson, R.D.1    Jasin, M.2
  • 11
    • 84861960685 scopus 로고    scopus 로고
    • Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects
    • Ramirez, C.L., Certo, M.T., Mussolino, C., et al. 2012, Engineered zinc finger nickases induce homology-directed repair with reduced mutagenic effects, Nucleic Acids Res., 40, 5560-8.
    • (2012) Nucleic Acids Res , vol.40 , pp. 5560-5568
    • Ramirez, C.L.1    Certo, M.T.2    Mussolino, C.3
  • 12
    • 83355168678 scopus 로고    scopus 로고
    • Selectionindependent generation of gene knockout mouse embryonic stem cells using zinc-finger nucleases
    • Osiak, A., Radecke, F., Guhl, E., et al. 2012, Selectionindependent generation of gene knockout mouse embryonic stem cells using zinc-finger nucleases, PLoS One, 6, e28911.
    • (2012) PLoS One , vol.6
    • Osiak, A.1    Radecke, F.2    Guhl, E.3
  • 14
    • 77956988605 scopus 로고    scopus 로고
    • Targeted mutagenesis in the silkworm Bombyx mori using zinc finger nuclease mRNA injection
    • Takasu, Y., Kobayashi, I., Beumer, K., et al. 2010, Targeted mutagenesis in the silkworm Bombyx mori using zinc finger nuclease mRNA injection, Insect Biochem. Mol. Biol., 40, 759-65.
    • (2010) Insect Biochem. Mol. Biol , vol.40 , pp. 759-765
    • Takasu, Y.1    Kobayashi, I.2    Beumer, K.3
  • 15
    • 67650045497 scopus 로고    scopus 로고
    • Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly
    • Kim, H.J., Lee, H.J., Kim, H., Cho, S.W. and Kim, J.S. 2009, Targeted genome editing in human cells with zinc finger nucleases constructed via modular assembly, Genome Res., 19, 1279-88.
    • (2009) Genome Res , vol.19 , pp. 1279-1288
    • Kim, H.J.1    Lee, H.J.2    Kim, H.3    Cho, S.W.4    Kim, J.S.5
  • 16
    • 47349097567 scopus 로고    scopus 로고
    • Rapid 'open-source' engineering of customized zinc-finger nucleases for highly efficient gene modification
    • Maeder, M.L., Thibodeau-Beganny, S., Osiak, A., et al. 2008, Rapid 'open-source' engineering of customized zinc-finger nucleases for highly efficient gene modification, Mol. Cell, 31, 294-301.
    • (2008) Mol. Cell , vol.31 , pp. 294-301
    • Maeder, M.L.1    Thibodeau-Beganny, S.2    Osiak, A.3
  • 17
    • 0037244523 scopus 로고    scopus 로고
    • The use of resolvases T4 endonuclease VII and T7 endonuclease i in mutation detection
    • Babon, J., McKenzie, M. and Cotton, R. 2003, The use of resolvases T4 endonuclease VII and T7 endonuclease I in mutation detection, Mol. Biotechnol., 23, 73-81.
    • (2003) Mol. Biotechnol , vol.23 , pp. 73-81
    • Babon, J.1    McKenzie, M.2    Cotton, R.3
  • 18
    • 17044455338 scopus 로고    scopus 로고
    • Two-step total gene synthesis method
    • Young, L. and Dong, Q. 2004, Two-step total gene synthesis method, Nucleic Acids Res., 32, e59.
    • (2004) Nucleic Acids Res , vol.32
    • Young, L.1    Dong, Q.2
  • 19
    • 0035880135 scopus 로고    scopus 로고
    • Combined SSCP/duplex analysis by capillary electrophoresis for more efficient mutation detection
    • Art. no. e71
    • Kozlowski, P. and Krzyzosiak, W.J. 2001, Combined SSCP/duplex analysis by capillary electrophoresis for more efficient mutation detection, Nucleic Acids Res., 29, art. no. e71.
    • (2001) Nucleic Acids Res , vol.29
    • Kozlowski, P.1    Krzyzosiak, W.J.2
  • 20
    • 0035253329 scopus 로고    scopus 로고
    • Singlemolecule DNA amplification and analysis in an integrated microfluidic device
    • Lagally, E.T., Medintz, I. and Mathies, R.A. 2001, Singlemolecule DNA amplification and analysis in an integrated microfluidic device, Anal. Chem., 73, 565-70.
    • (2001) Anal. Chem , vol.73 , pp. 565-570
    • Lagally, E.T.1    Medintz, I.2    Mathies, R.A.3
  • 21
  • 22
    • 77956524613 scopus 로고    scopus 로고
    • High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library
    • Ishikawa, T., Kamei, Y., Otozai, S., et al. 2010, High-resolution melting curve analysis for rapid detection of mutations in a Medaka TILLING library, BMC Mol. Biol., 11, 70.
    • (2010) BMC Mol. Biol , vol.11 , pp. 70
    • Ishikawa, T.1    Kamei, Y.2    Otozai, S.3
  • 23
    • 78049492308 scopus 로고    scopus 로고
    • Direct detection and quantification of methylation in nucleic acid sequences using high-resolution melting analysis
    • Lopez, C.M.R., Asenjo, B.G., Lloyd, A.J. and Wilkinson, M.J. 2010, Direct detection and quantification of methylation in nucleic acid sequences using high-resolution melting analysis, Anal. Chem., 82, 9100-8.
    • (2010) Anal. Chem , vol.82 , pp. 9100-9108
    • Lopez, C.M.R.1    Asenjo, B.G.2    Lloyd, A.J.3    Wilkinson, M.J.4
  • 24
    • 0018725176 scopus 로고
    • Genetic polymorphism in normal human fibroblasts as analyzed by two-dimensional polyacrylamide gel electrophoresis
    • Walton, K.E., Styer, D. and Gruenstein, E.I. 1979, Genetic polymorphism in normal human fibroblasts as analyzed by two-dimensional polyacrylamide gel electrophoresis, J. Biol. Chem., 254, 7951-60.
    • (1979) J. Biol. Chem , vol.254 , pp. 7951-7960
    • Walton, K.E.1    Styer, D.2    Gruenstein, E.I.3
  • 25
    • 0029661432 scopus 로고    scopus 로고
    • Human MutSalpha specifically binds to DNA containing aminofluorene and acetylaminofluorene adducts
    • Li, G.M., Wang, H. and Romano, L.J. 1996, Human MutSalpha specifically binds to DNA containing aminofluorene and acetylaminofluorene adducts, J. Biol. Chem., 271, 24084-8.
    • (1996) J. Biol. Chem , vol.271 , pp. 24084-24088
    • Li, G.M.1    Wang, H.2    Romano, L.J.3
  • 26
    • 79955752466 scopus 로고    scopus 로고
    • Fish stem cell cultures
    • Hong, N., Li, Z. and Hong, Y. 2011, Fish stem cell cultures, Int. J. Biol. Sci., 7, 392-402.
    • (2011) Int. J. Biol. Sci , vol.7 , pp. 392-402
    • Hong, N.1    Li, Z.2    Hong, Y.3
  • 27
    • 0032584234 scopus 로고    scopus 로고
    • Production of medakafish chimeras from a stable embryonic stem cell line
    • Hong, Y., Winkler, C. and Schartl, M. 1998, Production of medakafish chimeras from a stable embryonic stem cell line, Proc. Natl Acad. Sci. USA, 95, 3679-84.
    • (1998) Proc. Natl Acad. Sci. USA , vol.95 , pp. 3679-3684
    • Hong, Y.1    Winkler, C.2    Schartl, M.3
  • 28
    • 85045498207 scopus 로고
    • Modeling of heteroduplex formation during PCR from mixtures of DNA templates
    • Ruano, G. and Kidd, K.K. 1992, Modeling of heteroduplex formation during PCR from mixtures of DNA templates, PCR Methods Appl., 2, 112-6.
    • (1992) PCR Methods Appl , vol.2 , pp. 112-116
    • Ruano, G.1    Kidd, K.K.2
  • 29
    • 0344417014 scopus 로고    scopus 로고
    • Use of a DNA toolbox for the characterization of mutation scanning methods. I: Construction of the toolbox and evaluation of heteroduplex analysis
    • Highsmith, W.E. Jr., Jin, Q., Nataraj, A.J., et al. 1999, Use of a DNA toolbox for the characterization of mutation scanning methods. I: construction of the toolbox and evaluation of heteroduplex analysis, Electrophoresis, 20, 1186-94.
    • (1999) Electrophoresis , vol.20 , pp. 1186-1194
    • Highsmith Jr., W.E.1    Jin, Q.2    Nataraj, A.J.3
  • 30
    • 0018800089 scopus 로고
    • A rapid alkaline extraction procedure for screening recombinant plasmid DNA
    • Birnboim, H.C. and Doly, J. 1979, A rapid alkaline extraction procedure for screening recombinant plasmid DNA, Nucleic Acids Res., 7, 1513-23.
    • (1979) Nucleic Acids Res , vol.7 , pp. 1513-1523
    • Birnboim, H.C.1    Doly, J.2
  • 31
    • 67349115416 scopus 로고    scopus 로고
    • Medaka vasa is required for migration but not survival of primordial germ cells
    • Li, M., Hong, N., Xu, H., et al. 2009, Medaka vasa is required for migration but not survival of primordial germ cells, Mech. Dev., 126, 366-381.
    • (2009) Mech. Dev , vol.126 , pp. 366-381
    • Li, M.1    Hong, N.2    Xu, H.3
  • 32
    • 84867695709 scopus 로고    scopus 로고
    • Isolation of DNA fragments from polyacrylamide gels by the crush and soak method
    • doi:10.1101/pdb.prot2936
    • Sambrook, J. and Russell, D.W. 2006, Isolation of DNA fragments from polyacrylamide gels by the crush and soak method, Cold Spring Harb Protoc., doi:10.1101/pdb.prot2936.
    • (2006) Cold Spring Harb Protoc
    • Sambrook, J.1    Russell, D.W.2
  • 33
    • 0033049593 scopus 로고    scopus 로고
    • Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection
    • Nataraj, A.J., Olivos-Glander, I., Kusukawa, N. and Highsmith, W.E. Jr. 1999, Single-strand conformation polymorphism and heteroduplex analysis for gel-based mutation detection, Electrophoresis, 20, 1177-85.
    • (1999) Electrophoresis , vol.20 , pp. 1177-1185
    • Nataraj, A.J.1    Olivos-Glander, I.2    Kusukawa, N.3    Highsmith Jr., W.E.4
  • 35
    • 44949162060 scopus 로고    scopus 로고
    • Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases
    • Meng, X.D., Noyes, M.B., Zhu, L.H.J., Lawson, N.D. and Wolfe, S.A. 2008, Targeted gene inactivation in zebrafish using engineered zinc-finger nucleases, Nat. Biotechnol., 26, 695-701.
    • (2008) Nat. Biotechnol , vol.26 , pp. 695-701
    • Meng, X.D.1    Noyes, M.B.2    Zhu, L.H.J.3    Lawson, N.D.4    Wolfe, S.A.5
  • 36
    • 0030294711 scopus 로고    scopus 로고
    • Pluripotency and differentiation of embryonic stem cell lines from the medakafish (Oryzias latipes)
    • Hong, Y., Winkler, C. and Schartl, M. 1996, Pluripotency and differentiation of embryonic stem cell lines from the medakafish (Oryzias latipes), Mech. Dev., 60, 33-44.
    • (1996) Mech. Dev , vol.60 , pp. 33-44
    • Hong, Y.1    Winkler, C.2    Schartl, M.3
  • 37
    • 70350128134 scopus 로고    scopus 로고
    • Generation of medaka fish haploid embryonic stem cells
    • Yi, M., Hong, N. and Hong, Y. 2009, Generation of medaka fish haploid embryonic stem cells, Science, 326, 430-3.
    • (2009) Science , vol.326 , pp. 430-433
    • Yi, M.1    Hong, N.2    Hong, Y.3
  • 38
    • 2542635755 scopus 로고    scopus 로고
    • Establishment of a normal medakafish spermatogonial cell line capable of sperm production in vitro
    • Hong, Y., Liu, T., Zhao, H., et al. 2004, Establishment of a normal medakafish spermatogonial cell line capable of sperm production in vitro, Proc. Natl Acad. Sci. USA, 101, 8011-6.
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 8011-8016
    • Hong, Y.1    Liu, T.2    Zhao, H.3
  • 39
    • 77950599874 scopus 로고    scopus 로고
    • Accessibility of host cell lineages to medaka stem cells depends on genetic background and irradiation of recipient embryos
    • Hong, N., Li, M., Zeng, Z., et al. 2010, Accessibility of host cell lineages to medaka stem cells depends on genetic background and irradiation of recipient embryos, Cell. Mol. Life Sci., 67, 1189-202.
    • (2010) Cell. Mol. Life Sci , vol.67 , pp. 1189-1202
    • Hong, N.1    Li, M.2    Zeng, Z.3
  • 40
    • 79955770278 scopus 로고    scopus 로고
    • Sperm nuclear transfer and transgenic production in the fish Medaka
    • Liu, T.M., Liu, L., Wei, Q.W. and Hong, Y.H. 2011, Sperm nuclear transfer and transgenic production in the fish Medaka, Int. J. Biol. Sci., 7, 469-75.
    • (2011) Int. J. Biol. Sci , vol.7 , pp. 469-475
    • Liu, T.M.1    Liu, L.2    Wei, Q.W.3    Hong, Y.H.4
  • 41
    • 78650852409 scopus 로고    scopus 로고
    • Expression of gonadal soma derived factor (GSDF) is spatially and temporally correlated with early testicular differentiation in medaka
    • Shibata, Y., Paul-Prasanth, B., Suzuki, A., et al. 2010, Expression of gonadal soma derived factor (GSDF) is spatially and temporally correlated with early testicular differentiation in medaka, Gene Expr. Patterns, 10, 283-9.
    • (2010) Gene Expr. Patterns , vol.10 , pp. 283-289
    • Shibata, Y.1    Paul-Prasanth, B.2    Suzuki, A.3
  • 43
    • 0029071352 scopus 로고
    • Comparison of heteroduplex and single-strand conformation analyses, followed by ethidium fluorescence visualization, for the detection of mutations in four human genes
    • Rossetti, S., Corra, S., Biasi, M.O., Turco, A.E. and Pignatti, P.F. 1995, Comparison of heteroduplex and single-strand conformation analyses, followed by ethidium fluorescence visualization, for the detection of mutations in four human genes, Mol. Cell. Probes, 9, 195-200.
    • (1995) Mol. Cell. Probes , vol.9 , pp. 195-200
    • Rossetti, S.1    Corra, S.2    Biasi, M.O.3    Turco, A.E.4    Pignatti, P.F.5


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