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Volumn 10, Issue 6, 2012, Pages

Tutorial on de novo peptide sequencing using MS/MS mass spectrometry

Author keywords

algorithms; De novo peptide sequencing; spectrum graph; survey; tandem mass spectrometry; tutorial

Indexed keywords

PEPTIDE; PROTEIN;

EID: 84867617799     PISSN: 02197200     EISSN: 17576334     Source Type: Journal    
DOI: 10.1142/S0219720012310026     Document Type: Article
Times cited : (9)

References (70)
  • 1
  • 2
    • 0014007130 scopus 로고
    • Determination of the amino acid sequence in oligopeptides by computer interpretation of their high-resolution mass spectra
    • Biemann K, Cone C, Webster BR, Arsenault GP, Determination of the amino acid sequence in oligopeptides by computer interpretation of their high-resolution mass spectra, J Am Chem Soc 88(23):5598-5606, 1966.
    • (1966) J Am Chem Soc 88 , vol.23 , pp. 5598-5606
    • Biemann, K.1    Cone, C.2    Webster, B.R.3    Arsenault, G.P.4
  • 3
    • 0037050026 scopus 로고    scopus 로고
    • Functional organization of the yeast proteome by systematic analysis of protein complexes
    • Gavin A, osche M, Krause R, Functional organization of the yeast proteome by systematic analysis of protein complexes, Nature 415:141-147, 2002.
    • (2002) Nature , vol.41 , pp. 5141-147
    • Gavin, A.1    Oosche, M.2    Krause, R.3
  • 4
    • 0037050004 scopus 로고    scopus 로고
    • Systematic identication of protein complexes in Saccharomyces cerevisiae by mass spectrometry
    • Ho Y, Gruhler A, Heilbut A, Systematic identication of protein complexes in Saccharomyces cerevisiae by mass spectrometry, Nature 415:180-183, 2002.
    • (2002) Nature , vol.415 , pp. 180-183
    • Ho, Y.1    Gruhler, A.2    Heilbut, A.3
  • 5
    • 0034501099 scopus 로고    scopus 로고
    • Mobile and localized protons: A framework for understanding peptide dissociation
    • Wysocki VH, Tsaprailis G, Smith LL, Breci LA, Mobile and localized protons: A framework for understanding peptide dissociation, J Mass Spectrom 35:1399-1406, 2000.
    • (2000) J Mass Spectrom , vol.35 , pp. 1399-1406
    • Wysocki, V.H.1    Tsaprailis, G.2    Smith, L.L.3    Breci, L.A.4
  • 6
    • 0029810698 scopus 로고    scopus 로고
    • In°uence of peptide composition, gasphase basicity, and chemical modication on fragmentation e±ciency: Evidence for the mobile proton model
    • Dongre AR, Jones JL, Somogyi A, Wysocki VH, In°uence of peptide composition, gasphase basicity, and chemical modication on fragmentation e±ciency: Evidence for the mobile proton model, J Am Chem Soc 118:8365-8374, 1996.
    • (1996) J Am Chem Soc , vol.118 , pp. 8365-8374
    • Dongre, A.R.1    Jones, J.L.2    Somogyi, A.3    Wysocki, V.H.4
  • 7
    • 1442324456 scopus 로고    scopus 로고
    • In°uence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides
    • Tabb DL, Huang YY, Wysocki VH, Yates JR III, In°uence of basic residue content on fragment ion peak intensities in low-energy collision-induced dissociation spectra of peptides, J Anal Chem 76(5):1243-1248, 2004.
    • (2004) J Anal Chem , vol.76 , Issue.5 , pp. 1243-1248
    • Tabb, D.L.1    Huang, Y.Y.2    Wysocki, V.H.3    Yates III, J.R.4
  • 8
    • 0034516862 scopus 로고    scopus 로고
    • Dissociation of the peptide bond in protonated peptides
    • Polce MJ, Ren D, Wesdemiotis C, Dissociation of the peptide bond in protonated peptides, J Mass Spectrom 35:1391-1398, 2000.
    • (2000) J Mass Spectrom , vol.35 , pp. 1391-1398
    • Polce, M.J.1    Ren, D.2    Wesdemiotis, C.3
  • 9
    • 0030000913 scopus 로고    scopus 로고
    • Role of the site of protonation in the lowenergy decompositions of gas-phase peptide ions
    • Cox KA, Gaskel SJ, Morris M, Whiting A, Role of the site of protonation in the lowenergy decompositions of gas-phase peptide ions, J Am Soc Mass Spectrom 7:522-531, 1996.
    • (1996) J Am Soc Mass Spectrom , vol.7 , pp. 522-531
    • Cox, K.A.1    Gaskel, S.J.2    Morris, M.3    Whiting, A.4
  • 10
    • 0027918107 scopus 로고
    • Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation
    • Tang XJ, Thibault P, Boyd RK, Fragmentation reactions of multiply-protonated peptides and implications for sequencing by tandem mass spectrometry with low-energy collision-induced dissociation, Anal Chem 65:2824-2834, 1993.
    • (1993) Anal Chem 65 , pp. 2824-2834
    • Tang, X.J.1    Thibault, P.2    Boyd, R.K.3
  • 11
    • 0242653718 scopus 로고    scopus 로고
    • Mining a tandem mass spectrometry database to determine the trends and global factors in°uencing peptide fragmentation
    • Kapp EA, Schütz F, Reid GE et al., Mining a tandem mass spectrometry database to determine the trends and global factors in°uencing peptide fragmentation, Anal Chem 75:6251-6264, 2003.
    • (2003) Anal Chem , vol.75 , pp. 6251-6264
    • Kapp, E.A.1    Schütz, F.2    Reid, G.E.3
  • 12
    • 0742305695 scopus 로고    scopus 로고
    • Intensity-based protein identication by machine learning from a library of tandem mass spectra
    • Elias JE, Gibbons FD, King OD, Roth FP, Gygi SP, Intensity-based protein identication by machine learning from a library of tandem mass spectra, Nat Biotechnol 22:214-219, 2004.
    • (2004) Nat Biotechnol , vol.22 , pp. 214-219
    • Elias, J.E.1    Gibbons, F.D.2    King, O.D.3    Roth, F.P.4    Gygi, S.P.5
  • 13
    • 38649116302 scopus 로고    scopus 로고
    • Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra
    • Sun SW, Yu CG, Qiao YT et al., Deriving the probabilities of water loss and ammonia loss for amino acids from tandem mass spectra, J Proteome Res 7:202-208, 2008.
    • (2008) J Proteome Res , vol.7 , pp. 202-208
    • Sun, S.W.1    Yu, C.G.2    Qiao, Y.T.3
  • 14
    • 0027918082 scopus 로고
    • Fragmentation of protonated peptides: Surface-induced dissociation in conjunction with a quantum mechanical approach
    • McCormack AL, Somogyi A, Dongre AR, Wysocki VH, Fragmentation of protonated peptides: Surface-induced dissociation in conjunction with a quantum mechanical approach, Anal Chem 65(20):2859-2872, 1993.
    • (1993) Anal Chem , vol.65 , Issue.20 , pp. 2859-2872
    • McCormack, A.L.1    Somogyi, A.2    Dongre, A.R.3    Wysocki, V.H.4
  • 15
    • 3242660851 scopus 로고    scopus 로고
    • Prediction of low-energy collision-induced dissociation spectra of peptides
    • Zhang ZQ, Prediction of low-energy collision-induced dissociation spectra of peptides, J Anal Chem 76(14):3908-3922, 2004.
    • (2004) J Anal Chem , vol.76 , Issue.14 , pp. 3908-3922
    • Zhang, Z.Q.1
  • 16
    • 26444607864 scopus 로고    scopus 로고
    • Prediction of low-energy collision-induced dissociation spectra of peptides with three or more charges
    • Zhang ZQ, Prediction of low-energy collision-induced dissociation spectra of peptides with three or more charges, J Anal Chem 77(19):6364-6373, 2005.
    • (2005) J Anal Chem , vol.77 , Issue.19 , pp. 6364-6373
    • Zhang, Z.Q.1
  • 17
    • 0033823923 scopus 로고    scopus 로고
    • Biological mass spectrometry: A primer
    • Bakhtiar R, Tse FLS, Biological mass spectrometry: A primer, Mutagenesis 15(5):415-430, 2000.
    • (2000) Mutagenesis , vol.15 , Issue.5 , pp. 415-430
    • Bakhtiar, R.1    Tse, F.L.S.2
  • 18
    • 13844319908 scopus 로고    scopus 로고
    • Pepnovo: De novo peptide sequencing via probabilistic network modeling
    • Frank A, Pevzner P, Pepnovo: De novo peptide sequencing via probabilistic network modeling, Anal Chem 77:964-973, 2005.
    • (2005) Anal Chem , vol.77 , pp. 964-973
    • Frank, A.1    Pevzner, P.2
  • 20
    • 0030959279 scopus 로고    scopus 로고
    • Sequence database searches via de novo peptide sequencing by tandem mass spectrometry
    • Taylor JA, Johnson RS, Sequence database searches via de novo peptide sequencing by tandem mass spectrometry, Rapid Commun Mass Spectrom 11:1067-1075, 1997.
    • (1997) Rapid Commun Mass Spectrom , vol.11 , pp. 1067-1075
    • Taylor, J.A.1    Johnson, R.S.2
  • 22
    • 0000857494 scopus 로고
    • An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database
    • Eng JK, McCormack AL, Yates JR III, An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database, J Am Soc Mass Spectrom 5(11):976-989, 1994.
    • (1994) J Am Soc Mass Spectrom , vol.5 , Issue.11 , pp. 976-989
    • Eng, J.K.1    McCormack, A.L.2    Yates III, J.R.3
  • 23
    • 0033434080 scopus 로고    scopus 로고
    • Probability-based protein identi-cation by searching sequence databases using mass spectrometry data
    • Perkins DN, Pappin DJC, Creasy DM, Cottrell JS, Probability-based protein identi-cation by searching sequence databases using mass spectrometry data, Electrophoresis 20:3551-3567, 1999.
    • (1999) Electrophoresis , vol.20 , pp. 3551-3567
    • Perkins, D.N.1    Pappin, D.J.C.2    Creasy, D.M.3    Cottrell, J.S.4
  • 24
    • 34848889259 scopus 로고    scopus 로고
    • The paragon algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
    • Shilov IV, Seymour SL, Patel AA, Loboda A, Tang WH, Keating SP, Hunter CL, Nuwaysir LM, Schaeer DA, The paragon algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra, Mol Cell Proteomics 6:1638-1655, 2007.
    • (2007) Mol Cell Proteomics , vol.6 , pp. 1638-1655
    • Shilov, I.V.1    Seymour, S.L.2    Patel, A.A.3    Loboda, A.4    Tang, W.H.5    Keating, S.P.6    Hunter, C.L.7    Nuwaysir, L.M.8    Schaeer, D.A.9
  • 25
    • 10644233222 scopus 로고    scopus 로고
    • Database searching with mass spectrometric information
    • Beavis RC, Fenyo D, Database searching with mass spectrometric information, Proteomics 22-26, 2000.
    • (2000) Proteomics , pp. 22-26
    • Beavis, R.C.1    Fenyo, D.2
  • 26
    • 0035107717 scopus 로고    scopus 로고
    • E±ciency of database search for identi-cation of mutated and modied proteins via mass spectrometry
    • Pevzner PA, Mulyukov Z, Dancik V, Tang CL, E±ciency of database search for identi-cation of mutated and modied proteins via mass spectrometry, Genome Res 11:290-299, 2001.
    • (2001) Genome Res , vol.11 , pp. 290-299
    • Pevzner, P.A.1    Mulyukov, Z.2    Dancik, V.3    Tang, C.L.4
  • 27
    • 78649928055 scopus 로고    scopus 로고
    • Generating peptide candidates from amino-acid sequence databases for protein identication via mass spectrometry
    • Nathan E, Ross L, Generating peptide candidates from amino-acid sequence databases for protein identication via mass spectrometry, Lect Notes Comput Sci 2452:68-81, 2002.
    • (2002) Lect Notes Comput Sci , vol.2452 , pp. 68-81
    • Nathan, E.1    Ross, L.2
  • 28
    • 0036808207 scopus 로고    scopus 로고
    • Probid: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
    • Zhang N, Aebersold R, Schwikowski B, Probid: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data, Proteomics 2(10):1406-1412, 2002.
    • (2002) Proteomics , vol.2 , Issue.10 , pp. 1406-1412
    • Zhang, N.1    Aebersold, R.2    Schwikowski, B.3
  • 29
    • 0028575316 scopus 로고
    • Error-tolerant identication of peptides in sequence databases by peptide sequence tags
    • Mann M, Wilm M, Error-tolerant identication of peptides in sequence databases by peptide sequence tags, Anal Chem 66:4390-4399, 1994.
    • (1994) Anal Chem , vol.66 , pp. 4390-4399
    • Mann, M.1    Wilm, M.2
  • 30
  • 31
    • 22544465253 scopus 로고    scopus 로고
    • Spider: Software for protein identication from sequence tags with de novo sequencing error
    • Han Y, Ma B, Zhang K, Spider: Software for protein identication from sequence tags with de novo sequencing error, J Bioinformatics Comput Biol 3(3):697-716, 2005.
    • (2005) J Bioinformatics Comput Biol , vol.3 , Issue.3 , pp. 697-716
    • Han, Y.1    Ma, B.2    Zhang, K.3
  • 32
    • 0034915775 scopus 로고    scopus 로고
    • Mutation-tolerant protein identication by mass spectrometry
    • Pevzner PA, Dancik V, Tang CL, Mutation-tolerant protein identication by mass spectrometry, J Comput Biol 7(6):777-787, 2000.
    • (2000) J Comput Biol , vol.7 , Issue.6 , pp. 777-787
    • Pevzner, P.A.1    Dancik, V.2    Tang, C.L.3
  • 33
    • 28644447919 scopus 로고    scopus 로고
    • Identication of post-translational modications by blind search of mass spectra
    • Tsur D, Tanner S, Zandi E, Bafna V, Pevzner PA, Identication of post-translational modications by blind search of mass spectra, Nature Biotechnol 23(12):1562-1567, 2005.
    • (2005) Nature Biotechnol , vol.23 , Issue.12 , pp. 1562-1567
    • Tsur, D.1    Tanner, S.2    Zandi, E.3    Bafna, V.4    Pevzner, P.A.5
  • 34
    • 0345600791 scopus 로고    scopus 로고
    • Gutentag: High-throughput sequence tagging via an empirically derived fragmentation model
    • Tabb D, Saraf A, Yates J Jr., Gutentag: High-throughput sequence tagging via an empirically derived fragmentation model, Anal Chem 75:2594-2604, 2003.
    • (2003) Anal Chem , vol.75 , pp. 2594-2604
    • Tabb, D.1    Saraf, A.2    Yates Jr., J.3
  • 35
    • 32944474531 scopus 로고    scopus 로고
    • Prime: A mass spectrum data mining tool for de novo sequencing and ptms identication
    • Yan B, Qu Y, Mao F, Olman V, Xu Y, Prime: A mass spectrum data mining tool for de novo sequencing and ptms identication, J Comput Sci Technol 20(4):483-490, 2005.
    • (2005) J Comput Sci Technol , vol.20 , Issue.4 , pp. 483-490
    • Yan, B.1    Qu, Y.2    Mao, F.3    Olman, V.4    Xu, Y.5
  • 37
    • 0037702061 scopus 로고    scopus 로고
    • On de novo interpretation of peptide mass spectra
    • Bafna V, Edwards N, On de novo interpretation of peptide mass spectra. Res Comput Mol Biol 2003, pp. 9-18, 2003.
    • (2003) Res Comput Mol Biol , vol.2003 , pp. 9-18
    • Bafna, V.1    Edwards, N.2
  • 40
    • 12344266755 scopus 로고    scopus 로고
    • Algorithms for de novo peptide sequencing using tandem mass spectrometry
    • Lu BW, Chen T, Algorithms for de novo peptide sequencing using tandem mass spectrometry, BIOSILICO 2:85-90, 2004.
    • (2004) BIOSILICO , vol.2 , pp. 85-90
    • Lu, B.W.1    Chen, T.2
  • 41
    • 84987395027 scopus 로고
    • Paas 3: A computer program to determine probable sequence of peptides from mass spectrometric data
    • Sakurai T, Matsuo T, Matsuda H, Katakuse I, Paas 3: A computer program to determine probable sequence of peptides from mass spectrometric data, Biomed Mass Spectrom 11:396-399, 1984.
    • (1984) Biomed Mass Spectrom , vol.11 , pp. 396-399
    • Sakurai, T.1    Matsuo, T.2    Matsuda, H.3    Katakuse, I.4
  • 43
    • 0024427490 scopus 로고
    • Computer program (seqpep) to aid in the interpretation of highenergy collision tandem mass spectra of peptides
    • Johnson RJ, Biemann K, Computer program (seqpep) to aid in the interpretation of highenergy collision tandem mass spectra of peptides, Biomed Environ Mass Spectrom 18:945-957, 1989.
    • (1989) Biomed Environ Mass Spectrom , vol.18 , pp. 945-957
    • Johnson, R.J.1    Biemann, K.2
  • 44
    • 0025115285 scopus 로고
    • Determination of the primary structure of peptides using fast bombardment mass spectrometry
    • Zidarov D, Thibault P, Evans MJ, Bertrand MJ, Determination of the primary structure of peptides using fast bombardment mass spectrometry, Biomed Environ Mass Spectrom 19:13-16, 1990.
    • (1990) Biomed Environ Mass Spectrom , vol.19 , pp. 13-16
    • Zidarov, D.1    Thibault, P.2    Evans, M.J.3    Bertrand, M.J.4
  • 46
    • 0025038664 scopus 로고
    • Fast algorithm for peptide sequencing by mass spectroscopy
    • Bartels C, Fast algorithm for peptide sequencing by mass spectroscopy, Biomed Environ Mass Spectrom 19:363-368, 1990.
    • (1990) Biomed Environ Mass Spectrom , vol.19 , pp. 363-368
    • Bartels, C.1
  • 47
    • 0029145341 scopus 로고
    • A computer pogram to aid the sequencing of peptides in collision-activated decomposition experiments
    • Fern-andez de Cossío J, Gonzales J, Besada V, A computer pogram to aid the sequencing of peptides in collision-activated decomposition experiments, Comput Appl Biosci 11:427-434, 1995.
    • (1995) Comput Appl Biosci , vol.11 , pp. 427-434
    • Fern-andez De Cossío, J.1    Gonzales, J.2    Besada, V.3
  • 48
    • 0035356977 scopus 로고    scopus 로고
    • Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry
    • Taylor JA, Johnson RS, Implementation and uses of automated de novo peptide sequencing by tandem mass spectrometry, Anal Chem 73:2594-2604, 2000.
    • (2000) Anal Chem , vol.73 , pp. 2594-2604
    • Taylor, J.A.1    Johnson, R.S.2
  • 49
    • 33846550808 scopus 로고    scopus 로고
    • Characterization of multi-charge mass spectra for peptide sequencing
    • Chong KF, Ning K, Leong HW, Characterization of multi-charge mass spectra for peptide sequencing, J BioInformatics Comput Biol 4:1329-1352, 2006.
    • (2006) J BioInformatics Comput Biol , vol.4 , pp. 1329-1352
    • Chong, K.F.1    Ning, K.2    Leong, H.W.3
  • 50
    • 77951700662 scopus 로고    scopus 로고
    • De novo peptide sequencing for mass spectra based on multi charge strong tags
    • Ning K, Chong KF, Leong HW, De novo peptide sequencing for mass spectra based on multi charge strong tags, Proc Asia BioInformatics Conf, pp. 287-296, 2007.
    • (2007) Proc Asia BioInformatics Conf , pp. 287-296
    • Ning, K.1    Chong, K.F.2    Leong, H.W.3
  • 52
    • 0004524167 scopus 로고
    • The kth best route through a network
    • Pollack M, The kth best route through a network, Oper Res 9:578, 1961.
    • (1961) Oper Res , vol.9 , pp. 578
    • Pollack, M.1
  • 53
    • 0000663732 scopus 로고
    • Finding the k shortest loopless paths in a network
    • Yen JY, Finding the k shortest loopless paths in a network, Manage Sci 17:712-716, 1971.
    • (1971) Manage Sci , vol.17 , pp. 712-716
    • Yen, J.Y.1
  • 54
    • 76549097437 scopus 로고    scopus 로고
    • Better score function for peptide identication with etd ms/ms spectra
    • Liu XW, Shan BZ, Xin L, Ma B, Better score function for peptide identication with etd ms/ms spectra, BMC Bioinformatics 11(1):S4, 2010.
    • (2010) BMC Bioinformatics , vol.11 , Issue.1
    • Liu, X.W.1    Shan, B.Z.2    Xin, L.3    Ma, B.4
  • 56
    • 0037317111 scopus 로고    scopus 로고
    • Intensity-based statistical scorer for tandem mass spectrometry
    • Havilio M, Haddad Y, Smilansky Z, Intensity-based statistical scorer for tandem mass spectrometry, Anal Chem 75:435-444, 2003.
    • (2003) Anal Chem , vol.75 , pp. 435-444
    • Havilio, M.1    Haddad, Y.2    Smilansky, Z.3
  • 57
    • 84857001929 scopus 로고    scopus 로고
    • Characterization of multi-charge mass spectra for peptide sequencing
    • Chong KF, Kang N, Leong HW, Characterization of multi-charge mass spectra for peptide sequencing, Asia Pacic Bioinformatics Conf, pp. 109-119, 2006.
    • (2006) Asia Pacic Bioinformatics Conf , pp. 109-119
    • Chong, K.F.1    Kang, N.2    Leong, H.W.3
  • 59
    • 13344280958 scopus 로고    scopus 로고
    • Least-cost path in public transportation systems with fare rebates that are path- and time-dependent
    • Tan JS, Leong HW, Least-cost path in public transportation systems with fare rebates that are path- and time-dependent, IEEE Intelligent Transportation Systems Conf 7:1000-1005, 2004.
    • (2004) IEEE Intelligent Transportation Systems Conf , vol.7 , pp. 1000-1005
    • Tan, J.S.1    Leong, H.W.2
  • 60
    • 15344345840 scopus 로고    scopus 로고
    • An e®ective algorithm for peptide de novo sequencing from ms/ms spectra
    • Ma B, Zhang KZ, Liang CZ, An e®ective algorithm for peptide de novo sequencing from ms/ms spectra, J Comput Syst Sci 70:418-430, 2005.
    • (2005) J Comput Syst Sci , vol.70 , pp. 418-430
    • Ma, B.1    Zhang, K.Z.2    Liang, C.Z.3
  • 61
    • 34447323085 scopus 로고    scopus 로고
    • Msnovo: A dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry
    • Mo L, Dutta D, Wan Y, Chen T, Msnovo: A dynamic programming algorithm for de novo peptide sequencing via tandem mass spectrometry, Anal Chem 79:4870-4878, 2007.
    • (2007) Anal Chem , vol.79 , pp. 4870-4878
    • Mo, L.1    Dutta, D.2    Wan, Y.3    Chen, T.4
  • 64
    • 0034814613 scopus 로고    scopus 로고
    • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
    • Chen T, Kao MY, Tepel M, Rush J, Church GM, A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry, J Comput Biol 8:325-337, 2001.
    • (2001) J Comput Biol , vol.8 , pp. 325-337
    • Chen, T.1    Kao, M.Y.2    Tepel, M.3    Rush, J.4    Church, G.M.5
  • 65
    • 0037223678 scopus 로고    scopus 로고
    • A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry
    • Lu B, Chen T, A suboptimal algorithm for de novo peptide sequencing via tandem mass spectrometry, J Comput Biol 10:1-12, 2003.
    • (2003) J Comput Biol , vol.10 , pp. 1-12
    • Lu, B.1    Chen, T.2
  • 66
    • 38449087400 scopus 로고    scopus 로고
    • Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model
    • Ning K, Leong HW, Algorithm for peptide sequencing by tandem mass spectrometry based on better preprocessing and anti-symmetric computational model, Comput Syst Bioinformatics Conf 6:19-30, 2007.
    • (2007) Comput Syst Bioinformatics Conf , vol.6 , pp. 19-30
    • Ning, K.1    Leong, H.W.2
  • 67
    • 79957484337 scopus 로고    scopus 로고
    • Analysis of common bean expressed sequence tags identies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins
    • Yin FQ, Pajak A, Chapman R, Sharpe A, Huang SZ, Marsolias F, Analysis of common bean expressed sequence tags identies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins, BMC Genomics 12:268, 2011.
    • (2011) BMC Genomics , vol.12 , pp. 268
    • Yin, F.Q.1    Pajak, A.2    Chapman, R.3    Sharpe, A.4    Huang, S.Z.5    Marsolias, F.6
  • 70
    • 84856692718 scopus 로고    scopus 로고
    • De novo sequencing and homology searching
    • Ma B, Johnson R, De novo sequencing and homology searching, Mol Cell Proteomics 11, 2012.
    • Mol Cell Proteomics , vol.11 , pp. 2012
    • Ma, B.1    Johnson, R.2


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