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Volumn 40, Issue 18, 2012, Pages 9218-9232

Movement of DNA sequence recognition domains between non-orthologous proteins

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; RESTRICTION ENDONUCLEASE; RNA 16S;

EID: 84867566100     PISSN: 03051048     EISSN: 13624962     Source Type: Journal    
DOI: 10.1093/nar/gks681     Document Type: Article
Times cited : (27)

References (82)
  • 1
    • 0032885169 scopus 로고    scopus 로고
    • Genome evolution and the evolution of exon-shuffling - A review
    • DOI 10.1016/S0378-1119(99)00228-0, PII S0378111999002280
    • Patthy, L. (1999) Genome evolution and the evolution of exon-shuffling - a review. Gene, 238, 103-114. (Pubitemid 29436102)
    • (1999) Gene , vol.238 , Issue.1 , pp. 103-114
    • Patthy, L.1
  • 3
    • 44349168746 scopus 로고    scopus 로고
    • Restriction-modification systems
    • In: Yasbin, R. and Streips, U. N. (eds) Wiley-Liss, Inc, New York
    • Blumenthal, R. M. and Cheng, X. (2002) Restriction-modification systems. In: Yasbin, R. and Streips, U. N. (eds), Modern Microbial Genetics. Wiley-Liss, Inc, New York, pp. 177-226.
    • (2002) Modern Microbial Genetics. , pp. 177-226
    • Blumenthal, R.1    Cheng, X.2
  • 5
    • 2942564333 scopus 로고    scopus 로고
    • Sequence permutations in the molecular evolution of dna methyltransferases
    • Bujnicki, J. M. (2002) Sequence permutations in the molecular evolution of DNA methyltransferases. BMC Evol. Biol., 2, 3.
    • (2002) BMC Evol. Biol. , vol.2 , pp. 3
    • Bujnicki, J.M.1
  • 6
    • 0028841409 scopus 로고
    • Structure-guided analysis reveals nine sequence motifs conserved among dna amino-methyltransferases, and suggests a catalytic mechanism for these enzymes
    • Malone, T., Blumenthal, R. M. and Cheng, X. (1995) Structure-guided analysis reveals nine sequence motifs conserved among DNA amino- methyltransferases, and suggests a catalytic mechanism for these enzymes. J. Mol. Biol., 253, 618-632.
    • (1995) J. Mol. Biol. , vol.253 , pp. 618-632
    • Malone, T.1    Blumenthal, R.M.2    Cheng, X.3
  • 7
    • 17044403057 scopus 로고    scopus 로고
    • Type ii restriction endonucleases: Structure and mechanism
    • Pingoud, A., Fuxreiter, M., Pingoud, V. and Wende, W. (2005) Type II restriction endonucleases: structure and mechanism. Cell Mol. Life Sci., 62, 685-707.
    • (2005) Cell Mol. Life Sci. , vol.62 , pp. 685-707
    • Pingoud, A.1    Fuxreiter, M.2    Pingoud, V.3    Wende, W.4
  • 8
    • 46349101158 scopus 로고    scopus 로고
    • Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses
    • DOI 10.1093/nar/gkn175
    • Orlowski, J. and Bujnicki, J. M. (2008) Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses. Nucleic Acids Res., 36, 3552-3569. (Pubitemid 351917520)
    • (2008) Nucleic Acids Research , vol.36 , Issue.11 , pp. 3552-3569
    • Orlowski, J.1    Bujnicki, J.M.2
  • 9
    • 0034130457 scopus 로고    scopus 로고
    • Type I restriction systems: Sophisticated molecular machines (a legacy of Bertani and Weigle)
    • Murray, N. E. (2000) Type I restriction systems: sophisticated molecular machines (a legacy of Bertani and Weigle). Microbiol. Mol. Biol. Rev., 64, 412-434. (Pubitemid 30412679)
    • (2000) Microbiology and Molecular Biology Reviews , vol.64 , Issue.2 , pp. 412-434
    • Murray, N.E.1
  • 10
    • 0020580289 scopus 로고
    • Sequence diversity among related genes for recognition of specific targets in DNA molecules
    • Gough, J. A. and Murray, N. E. (1983) Sequence diversity among related genes for recognition of specific targets in DNA molecules. J. Mol. Biol., 166, 1-19. (Pubitemid 13079459)
    • (1983) Journal of Molecular Biology , vol.166 , Issue.1 , pp. 1-19
    • Gough, J.A.1    Murray, N.E.2
  • 11
    • 0035883536 scopus 로고    scopus 로고
    • Nucleoside triphosphate-dependent restriction enzymes
    • Dryden, D. T. F., Murray, N. E. and Rao, D. N. (2001) Nucleoside triphosphate-dependent restriction enzymes. Nucleic Acids Res., 29, 3728-3741. (Pubitemid 32910515)
    • (2001) Nucleic Acids Research , vol.29 , Issue.18 , pp. 3728-3741
    • Dryden, D.T.F.1    Murray, N.E.2    Rao, D.N.3
  • 12
    • 34548569008 scopus 로고    scopus 로고
    • Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression
    • DOI 10.1093/nar/gkm571
    • Fox, K. L., Dowideit, S. J.,-erwin, A. L., Srikhanta, Y. N., Smith, A. L. and Jennings, M. P. (2007) Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression. Nucleic Acids Res., 35, 5242-5252. (Pubitemid 47394207)
    • (2007) Nucleic Acids Research , vol.35 , Issue.15 , pp. 5242-5252
    • Fox, K.L.1    Dowideit, S.J.2    Erwin, A.L.3    Srikhanta, Y.N.4    Smith, A.L.5    Jennings, M.P.6
  • 15
    • 0017082834 scopus 로고
    • A restriction endonuclease analysis of the bacterial plasmid controlling the ecori restriction and modification of dn a
    • Betlach, M., Hershfield, V., Chow, L., Brown, W., Goodman, H. and Boyer, H. W. (1976) A restriction endonuclease analysis of the bacterial plasmid controlling the ecoRI restriction and modification of DN A. Fed. Proc., 35, 2037-2043.
    • (1976) Fed. Proc. , vol.35 , pp. 2037-2043
    • Betlach, M.1    Hershfield, V.2    Chow, L.3    Brown, W.4    Goodman, H.5    Boyer, H.W.6
  • 16
    • 17644395234 scopus 로고    scopus 로고
    • Sau421, a Bcgl-like restriction-modification system encoded by the Staphylococcus aureus quandruple-converting phage φ42
    • DOI 10.1099/mic.0.27646-0
    • Dempsey, R. M., Carroll, D., Kong, H., Higgins, L., Keane, C. T. and Coleman, D. C. (2005) Sau42I, a BcgI-like restriction-modification system encoded by the Staphylococcus aureus quadruple-converting phage Phi42. Microbiology, 151, 1301-1311. (Pubitemid 40568025)
    • (2005) Microbiology , vol.151 , Issue.4 , pp. 1301-1311
    • Dempsey, R.M.1    Carroll, D.2    Kong, H.3    Higgins, L.4    Keane, C.T.5    Coleman, D.C.6
  • 18
    • 0024278335 scopus 로고
    • Type iii dna restriction and modification systems ecop1 and ecop15. Nucleotide sequence of the ecop1 operon, the ecop15 mod gene and some ecop1 mod mutants
    • Humbelin, M., Suri, B., Rao, D. N., Hornby, D. P.,-eberle, H., Pripfl, T., Kenel, S. and Bickle, T. A. (1988) Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants. J. Mol. Biol., 200, 23-29.
    • (1988) J. Mol. Biol. , vol.200 , pp. 23-29
    • Humbelin, M.1    Suri, B.2    Rao, D.N.3    Hornby, D.P.4    Eeberle, H.5    Pripfl, T.6    Kenel, S.7    Bickle, T.A.8
  • 19
    • 0037379231 scopus 로고    scopus 로고
    • Evidence for horizontal transfer of the EcoT38I restriction-modification gene to chromosomal DNA by the P2 phage and diversity of defective P2 prophages in Escherichia coli TH38 strains
    • DOI 10.1128/JB.185.7.2296-2305.2003
    • Kita, K., Kawakami, H. and Tanaka, H. (2003) Evidence for horizontal transfer of the EcoT38I restriction-modification gene to chromosomal DNA by the P2 phage and diversity of defective P2 prophages in Escherichia coli TH38 strains. J. Bacteriol., 185, 2296-2305. (Pubitemid 36363191)
    • (2003) Journal of Bacteriology , vol.185 , Issue.7 , pp. 2296-2305
    • Kita, K.1    Kawakami, H.2    Tanaka, H.3
  • 20
    • 0032703783 scopus 로고    scopus 로고
    • Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DNA
    • Kita, K., Tsuda, J., Kato, T., Okamoto, K., Yanase, H. and Tanaka, M. (1999) Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DN A. J. Bacteriol., 181, 6822-6827. (Pubitemid 29517999)
    • (1999) Journal of Bacteriology , vol.181 , Issue.21 , pp. 6822-6827
    • Kita, K.1    Tsuda, J.2    Kato, T.3    Okamoto, K.4    Yanase, H.5    Tanaka, M.6
  • 21
    • 0036135596 scopus 로고    scopus 로고
    • Molecular organization of intrinsic restriction and modification genes BsuM of bacillus subtilis Marburg
    • DOI 10.1128/JB.184.2.381-389.2002
    • Ohshima, H., Matsuoka, S., Asai, K. and Sadaie, Y. (2002) Molecular organization of intrinsic restriction and modification genes BsuM of Bacillus subtilis Marburg. J. Bacteriol., 184, 381-389. (Pubitemid 34027377)
    • (2002) Journal of Bacteriology , vol.184 , Issue.2 , pp. 381-389
    • Ohshima, H.1    Matsuoka, S.2    Asai, K.3    Sadaie, Y.4
  • 22
    • 0031016022 scopus 로고    scopus 로고
    • The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: Implications for the evolution and spread of DNA restriction systems
    • Tyndall, C., Lehnherr, H., Sandmeier, U., Kulik, E. and Bickle, T. A. (1997) The type IC hsd loci of the enterobacteria are flanked by DNA with high homology to the phage P1 genome: implications for the evolution and spread of DNA restriction systems. Mol. Microbiol., 23, 729-736. (Pubitemid 27072934)
    • (1997) Molecular Microbiology , vol.23 , Issue.4 , pp. 729-736
    • Tyndall, C.1    Lehnherr, H.2    Sandmeier, U.3    Kulik, E.4    Bickle, T.A.5
  • 23
    • 0030685035 scopus 로고    scopus 로고
    • Transposon-like structure of a new plasmid-encoded restriction- modification system in rhizobium leguminosarum vf39s m
    • Rochepeau, P., Selinger, L. B. and Hynes, M. F. (1997) Transposon-like structure of a new plasmid-encoded restriction-modification system in Rhizobium leguminosarum VF39S M. Mol. Gen. Genet., 256, 387-396.
    • (1997) Mol. Gen. Genet. , vol.256 , pp. 387-396
    • Rochepeau, P.1    Selinger, L.B.2    Hynes, M.F.3
  • 24
    • 67349260702 scopus 로고    scopus 로고
    • The new is1595 family, its relation to is1 and the frontier between insertion sequences and transposons
    • Siguier, P., Gagnevin, L. and Chandler, M. (2009) The new IS1595 family, its relation to IS1 and the frontier between insertion sequences and transposons. Res. Microbiol., 160, 232-241.
    • (2009) Res. Microbiol. , vol.160 , pp. 232-241
    • Siguier, P.1    Gagnevin, L.2    Chandler, M.3
  • 25
    • 49949110306 scopus 로고    scopus 로고
    • Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the sinorhizobium meliloti genomes of the model strain rm1021 and the field isolate sm11
    • Stiens, M., Becker, A., Bekel, T., Godde, V., Goesmann, A., Niehaus, K., Schneiker-Bekel, S., Selbitschka, W., Weidner, S., Schluter, A. et al. (2008) Comparative genomic hybridisation and ultrafast pyrosequencing revealed remarkable differences between the Sinorhizobium meliloti genomes of the model strain Rm1021 and the field isolate SM11. J. Biotechnol., 136, 31-37.
    • (2008) J. Biotechnol. , vol.136 , pp. 31-37
    • Stiens, M.1    Becker, A.2    Bekel, T.3    Godde, V.4    Goesmann, A.5    Niehaus, K.6    Schneiker-Bekel, S.7    Selbitschka, W.8    Weidner, S.9    Schluter, A.10
  • 26
    • 47749104210 scopus 로고    scopus 로고
    • Presence of a family of plasmids (29 to 65 kilobases) with a 26-kilobase common region in different strains of the sulfur-oxidizing bacterium Acidithiobacillus caldus
    • DOI 10.1128/AEM.00864-08
    • van Zyl, L. J., Deane, S. M., Louw, L. A. and Rawlings, D. E. (2008) Presence of a family of plasmids (29 to 65 kilobases) with a 26-kilobase common region in different strains of the sulfur-oxidizing bacterium Acidithiobacillus caldus. Appl. Environ. Microbiol., 74, 4300-4308. (Pubitemid 352031010)
    • (2008) Applied and Environmental Microbiology , vol.74 , Issue.14 , pp. 4300-4308
    • Van Zyl, L.J.1    Deane, S.M.2    Louw, L.-A.3    Rawlings, D.E.4
  • 27
    • 0033036197 scopus 로고    scopus 로고
    • Molecular phylogenetics of DNA 5mC-methyltransferases
    • Bujnicki, J. M. and Radlinska, M. (1999) Molecular phylogenetics of DNA 5mC-methyltransferases. Acta Microbiol. Pol., 48, 19-30. (Pubitemid 29277204)
    • (1999) Acta Microbiologica Polonica , vol.48 , Issue.1 , pp. 19-30
    • Bujnicki, J.M.1    Radlinska, M.2
  • 28
    • 0028998049 scopus 로고
    • Evidence for an evolutionary relationship among type-ii restriction endonucleases
    • Jeltsch, A., Kroger, M. and Pingoud, A. (1995) Evidence for an evolutionary relationship among type-II restriction endonucleases. Gene, 160, 7-16.
    • (1995) Gene , vol.160 , pp. 7-16
    • Jeltsch, A.1    Kroger, M.2    Pingoud, A.3
  • 29
    • 0034707207 scopus 로고    scopus 로고
    • Diversity of restriction-modification gene homologues in Helicobacter pylori
    • DOI 10.1016/S0378-1119(00)00455-8, PII S0378111900004558
    • Nobusato, A., Uchiyama, I. and Kobayashi, I. (2000) Diversity of restriction-modification gene homologues in Helicobacter pylori. Gene, 259, 89-98. (Pubitemid 32119240)
    • (2000) Gene , vol.259 , Issue.1-2 , pp. 89-98
    • Nobusato, A.1    Uchiyama, I.2    Kobayashi, I.3
  • 30
    • 0034707190 scopus 로고    scopus 로고
    • Insertion with long target duplication: A mechanism for gene mobility suggested from comparison of two related bacterial genomes
    • DOI 10.1016/S0378-1119(00)00456-X, PII S037811190000456X
    • Nobusato, A., Uchiyama, I., Ohashi, S. and Kobayashi, I. (2000) Insertion with long target duplication: a mechanism for gene mobility suggested from comparison of two related bacterial genomes. Gene, 259, 99-108. (Pubitemid 32119241)
    • (2000) Gene , vol.259 , Issue.1-2 , pp. 99-108
    • Nobusato, A.1    Uchiyama, I.2    Ohashi, S.3    Kobayashi, I.4
  • 33
    • 0030928660 scopus 로고    scopus 로고
    • A new type of illegitimate recombination is dependent on restriction and homologous interaction
    • Kusano, K., Sakagami, K., Yokochi, T., Naito, T., Tokinaga, Y., Ueda, E. and Kobayashi, I. (1997) A new type of illegitimate recombination is dependent on restriction and homologous interaction. J. Bacteriol., 179, 5380-5390. (Pubitemid 27387606)
    • (1997) Journal of Bacteriology , vol.179 , Issue.17 , pp. 5380-5390
    • Kusano, K.1    Sakagami, K.2    Yokochi, T.3    Naito, T.4    Tokinaga, Y.5    Ueda, E.6    Kobayashi, I.7
  • 34
    • 0035004723 scopus 로고    scopus 로고
    • Experimental genome evolution: Large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction- modification gene complex
    • DOI 10.1046/j.1365-2958.2001.02436.x
    • Handa, N., Nakayama, Y., Sadykov, M. and Kobayashi, I. (2001) Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex. Mol. Microbiol., 40, 932-940. (Pubitemid 32523190)
    • (2001) Molecular Microbiology , vol.40 , Issue.4 , pp. 932-940
    • Handa, N.1    Nakayama, Y.2    Sadykov, M.3    Kobayashi, I.4
  • 35
    • 78649821044 scopus 로고    scopus 로고
    • Conflicts targeting epigenetic systems and their resolution by cell death: Novel concepts for methyl-specific and other restriction systems
    • Ishikawa, K., Fukuda, E. and Kobayashi, I. (2010) Conflicts targeting epigenetic systems and their resolution by cell death: novel concepts for methyl-specific and other restriction systems. DNA Res., 17, 325-342.
    • (2010) DNA Res. , vol.17 , pp. 325-342
    • Ishikawa, K.1    Fukuda, E.2    Kobayashi, I.3
  • 36
    • 57649174743 scopus 로고    scopus 로고
    • Cell death upon epigenetic genome methylation: A novel function of methyl-specific deoxyribonucleases
    • Fukuda, E., Kaminska, K. H., Bujnicki, J. M. and Kobayashi, I. (2008) Cell death upon epigenetic genome methylation: a novel function of methyl-specific deoxyribonucleases. Genome Biol., 9, R163.
    • (2008) Genome Biol. , vol.9
    • Fukuda, E.1    Kaminska, K.2    Bujnicki, J.M.3    Kobayashi, I.4
  • 37
    • 67649862214 scopus 로고    scopus 로고
    • Cleavage of a model dna replication fork by a type i restriction endonuclease
    • Ishikawa, K., Handa, N. and Kobayashi, I. (2009) Cleavage of a model DNA replication fork by a Type I restriction endonuclease. Nucleic Acids Res., 37, 3531-3544.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 3531-3544
    • Ishikawa, K.1    Handa, N.2    Kobayashi, I.3
  • 38
    • 66249109296 scopus 로고    scopus 로고
    • From damaged genome to cell surface: Transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex
    • Asakura, Y. and Kobayashi, I. (2009) From damaged genome to cell surface: transcriptome changes during bacterial cell death triggered by loss of a restriction-modification gene complex. Nucleic Acids Res., 37, 3021-3031.
    • (2009) Nucleic Acids Res. , vol.37 , pp. 3021-3031
    • Asakura, Y.1    Kobayashi, I.2
  • 39
    • 33644774549 scopus 로고    scopus 로고
    • Genetic addiction: Selfish gene's strategy for symbiosis in the genome
    • DOI 10.1534/genetics.105.042895
    • Mochizuki, A., Yahara, K., Kobayashi, I. and Iwasa, Y. (2006) Genetic addiction: selfish gene's strategy for symbiosis in the genome. Genetics, 172, 1309-1323. (Pubitemid 43345460)
    • (2006) Genetics , vol.172 , Issue.2 , pp. 1309-1323
    • Mochizuki, A.1    Yahara, K.2    Kobayashi, I.3    Iwasa, Y.4
  • 40
    • 0037057683 scopus 로고    scopus 로고
    • Helicobacter pylori infection
    • Suerbaum, S. and Michetti, P. (2002) Helicobacter pylori infection. N. Engl. J. Med., 347, 1175-1186.
    • (2002) N. Engl. J. Med. , vol.347 , pp. 1175-1186
    • Suerbaum, S.1    Michetti, P.2
  • 41
    • 75549086595 scopus 로고    scopus 로고
    • Rebase a database for dna restriction and modification: Enzymes, genes and genomes
    • Roberts, R. J., Vincze, T., Posfai, J. and Macelis, D. (2010) REBASE - a database for DNA restriction and modification: enzymes, genes and genomes. Nucleic Acids Res., 38, D234-D236.
    • (2010) Nucleic Acids Res. , vol.38
    • Roberts, R.1    Vincze, T.2    Posfai, J.3    Macelis, D.4
  • 44
    • 0032697140 scopus 로고    scopus 로고
    • DNA uptake in bacteria
    • DOI 10.1146/annurev.micro.53.1.217
    • Dubnau, D. (1999) DNA uptake in bacteria. Annu. Rev. Microbiol., 53, 217-244. (Pubitemid 29503731)
    • (1999) Annual Review of Microbiology , vol.53 , pp. 217-244
    • Dubnau, D.1
  • 46
    • 79955043529 scopus 로고    scopus 로고
    • Domain movement within a gene: A novel evolutionary mechanism for protein diversification
    • Furuta, Y., Kawai, M., Uchiyama, I. and Kobayashi, I. (2011) Domain movement within a gene: A novel evolutionary mechanism for protein diversification. PLoS One, 6,-e18819.
    • (2011) PLoS One , vol.6
    • Furuta, Y.1    Kawai, M.2    Uchiyama, I.3    Kobayashi, I.4
  • 48
    • 0030801002 scopus 로고    scopus 로고
    • Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
    • DOI 10.1093/nar/25.17.3389
    • Altschul, S. F., Madden, T. L., Schaffer, A. A., Zhang, J., Zhang, Z., Miller, W. and Lipman, D. J. (1997) Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res., 25, 3389-3402. (Pubitemid 27359211)
    • (1997) Nucleic Acids Research , vol.25 , Issue.17 , pp. 3389-3402
    • Altschul, S.F.1    Madden, T.L.2    Schaffer, A.A.3    Zhang, J.4    Zhang, Z.5    Miller, W.6    Lipman, D.J.7
  • 49
    • 0017579598 scopus 로고
    • Purification and properties of the P15 specific restriction endonuclease from Escherichia coli
    • Reiser, J. and Yuan, R. (1977) Purification and properties of the P15 specific restriction endonuclease from Escherichia coli. J. Biol. Chem., 252, 451-456. (Pubitemid 8028859)
    • (1977) Journal of Biological Chemistry , vol.252 , Issue.2 , pp. 451-456
    • Reiser, J.1    Yuan, R.2
  • 50
    • 0025767319 scopus 로고
    • M.EcoP15 methylates the second adenine in its recognition sequence
    • Meisel, A., Kruger, D. H. and Bickle, T. A. (1991) M.EcoP15 methylates the second adenine in its recognition sequence. Nucleic Acids Res., 19, 3997.
    • (1991) Nucleic Acids Res. , vol.19 , pp. 3997
    • Meisel, A.1    Kruger, D.H.2    Bickle, T.A.3
  • 52
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh, K., Misawa, K., Kuma, K. and Miyata, T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30, 3059-3066. (Pubitemid 34851225)
    • (2002) Nucleic Acids Research , vol.30 , Issue.14 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.-I.3    Miyata, T.4
  • 53
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J. D., Higgins, D. G. and Gibson, T. J. (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res., 22, 4673-4680. (Pubitemid 24354800)
    • (1994) Nucleic Acids Research , vol.22 , Issue.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 56
    • 79957613599 scopus 로고    scopus 로고
    • Mega5 molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
    • Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M. and Kumar, S. (2011) MEGA5: molecular evolutionary genetics analysis using maximum likelihood,-evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol., 28, 2731-2739.
    • (2011) Mol. Biol. Evol. , vol.28 , pp. 2731-2739
    • Tamura, K.1    Peterson, D.2    Peterson, N.3    Stecher, G.4    Nei, M.5    Kumar, S.6
  • 57
    • 3042849253 scopus 로고    scopus 로고
    • Biased biological functions of horizontally-transferred genes in prokaryotic genomes
    • DOI 10.1038/ng1381
    • Nakamura, Y., Itoh, T., Matsuda, H. and Gojobori, T. (2004) Biased biological functions of horizontally transferred genes in prokaryotic genomes. Nat. Genet., 36, 760-766. (Pubitemid 38886640)
    • (2004) Nature Genetics , vol.36 , Issue.7 , pp. 760-766
    • Nakamura, Y.1    Itoh, T.2    Matsuda, H.3    Gojobori, T.4
  • 59
    • 0020420570 scopus 로고
    • Bacteriology of severe periodontitis in young adult humans
    • Moore, W. E., Holdeman, L. V., Smibert, R. M., Hash, D. E., Burmeister, J. A. and Ranney, R. R. (1982) Bacteriology of severe periodontitis in young adult humans. Infect. Immun., 38, 1137-1148. (Pubitemid 13206265)
    • (1982) Infection and Immunity , vol.38 , Issue.3 , pp. 1137-1148
    • Moore, W.E.C.1    Holdeman, L.V.2    Smibert, R.M.3
  • 60
    • 77957918692 scopus 로고    scopus 로고
    • Strain-specific genes of helicobacter pylori: Genome evolution driven by a novel type iv secretion system and genomic island transfer
    • Fischer, W., Windhager, L., Rohrer, S., Zeiller, M., Karnholz, A., Hoffmann, R., Zimmer, R. and Haas, R. (2010) Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res., 38, 6089-6101.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 6089-6101
    • Fischer, W.1    Windhager, L.2    Rohrer, S.3    Zeiller, M.4    Karnholz, A.5    Hoffmann, R.6    Zimmer, R.7    Haas, R.8
  • 61
    • 76949108806 scopus 로고    scopus 로고
    • The phasevarion: Phase variation of type iii dna methyltransferases controls coordinated switching in multiple genes
    • Srikhanta, Y. N., Fox, K. L. and Jennings, M. P. (2010) The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes. Nat. Rev. Microbiol., 8, 196-206.
    • (2010) Nat. Rev. Microbiol. , vol.8 , pp. 196-206
    • Srikhanta, Y.1    Fox, K.L.2    Jennings, M.P.3
  • 62
    • 0026774395 scopus 로고
    • Roles of selection and recombination in the evolution of type i restriction-modification systems in enterobacteria
    • Sharp, P. M., Kelleher, J. E., Daniel, A. S., Cowan, G. M. and Murray, N. E. (1992) Roles of selection and recombination in the evolution of type I restriction-modification systems in enterobacteria. Proc. Natl Acad. Sci. USA, 89, 9836-9840.
    • (1992) Proc. Natl Acad. Sci. USA , vol.89 , pp. 9836-9840
    • Sharp, P.1    Kelleher, J.2    Daniel, A.3    Cowan, G.M.4    Murray, N.E.5
  • 64
    • 0023373869 scopus 로고
    • Reassortment of dna recognition domains and the evolution of new specificities
    • Gann, A. A., Campbell, A. J., Collins, J. F., Coulson, A. F. and Murray, N. E. (1987) Reassortment of DNA recognition domains and the evolution of new specificities. Mol. Microbiol., 1, 13-22.
    • (1987) Mol. Microbiol. , vol.1 , pp. 13-22
    • Gann, A.1    Campbell, A.2    Collins, J.3    Coulson, A.F.4    Murray, N.E.5
  • 65
    • 0026540803 scopus 로고
    • Recombination of constant and variable modules alters dna sequence recognition by type ic restriction-modification enzymes
    • Gubler, M., Braguglia, D., Meyer, J., Piekarowicz, A. and Bickle, T. A. (1992) Recombination of constant and variable modules alters DNA sequence recognition by type IC restriction-modification enzymes. EMBO J., 11, 233-240.
    • (1992) EMBO J. , vol.11 , pp. 233-240
    • Gubler, M.1    Braguglia, D.2    Meyer, J.3    Piekarowicz, A.4    Bickle, T.A.5
  • 66
    • 34548743476 scopus 로고    scopus 로고
    • Gene conversion: Mechanisms, evolution and human disease
    • DOI 10.1038/nrg2193, PII NRG2193
    • Chen, J. M., Cooper, D. N., Chuzhanova, N., Ferec, C. and Patrinos, G. P. (2007) Gene conversion: mechanisms,-evolution and human disease. Nat. Rev. Genet., 8, 762-775. (Pubitemid 47429210)
    • (2007) Nature Reviews Genetics , vol.8 , Issue.10 , pp. 762-775
    • Chen, J.-M.1    Cooper, D.N.2    Chuzhanova, N.3    Ferec, C.4    Patrinos, G.P.5
  • 67
    • 0033918170 scopus 로고    scopus 로고
    • Comparative genomics of Helicobacter pylori: Analysis of the outer membrane protein families
    • DOI 10.1128/IAI.68.7.4155-4168.2000
    • Alm, R. A., Bina, J., Andrews, B. M., Doig, P., Hancock, R. E. and Trust, T. J. (2000) Comparative genomics of Helicobacter pylori: analysis of the outer membrane protein families. Infect. Immun., 68, 4155-4168. (Pubitemid 30434570)
    • (2000) Infection and Immunity , vol.68 , Issue.7 , pp. 4155-4168
    • Alm, R.A.1    Bina, J.2    Andrews, B.M.3    Doig, P.4    Hancock, R.E.W.5    Trust, T.J.6
  • 68
    • 77956624772 scopus 로고    scopus 로고
    • Helicobacter pylori outer membrane proteins
    • In: Yamaoka, Y. (ed.) Caister Academic Pr, Norfolk, p
    • Yamaoka, Y. and Alm, R. A. (2008) Helicobacter pylori outer membrane proteins. In: Yamaoka, Y. (ed.), Helicobacter Pylori: Molecular Genetics and Cellular Biology. Caister Academic Pr, Norfolk, pp. 37-60.
    • (2008) Helicobacter Pylori: Molecular Genetics and Cellular Biology , pp. 37-60
    • Yamaoka, Y.1    Alm, R.A.2
  • 69
    • 0022462167 scopus 로고
    • The repertoire of silent pilus genes in Neisseria gonorrhoeae: Evidence for gene conversion
    • Haas, R. and Meyer, T. F. (1986) The repertoire of silent pilus genes in Neisseria gonorrhoeae: evidence for gene conversion. Cell, 44, 107-115. (Pubitemid 16036718)
    • (1986) Cell , vol.44 , Issue.1 , pp. 107-115
    • Haas, R.1    Meyer, T.F.2
  • 70
    • 0036010483 scopus 로고    scopus 로고
    • Antigenic variation ofanaplasma marginale msp2 occurs by combinatorial gene conversion
    • DOI 10.1046/j.1365-2958.2002.02792.x
    • Brayton, K. A., Palmer, G. H., Lundgren, A., Yi, J. and Barbet, A. F. (2002) Antigenic variation of Anaplasma marginale msp2 occurs by combinatorial gene conversion. Mol. Microbiol., 43, 1151-1159. (Pubitemid 34308470)
    • (2002) Molecular Microbiology , vol.43 , Issue.5 , pp. 1151-1159
    • Brayton, K.A.1    Palmer, G.H.2    Lundgren, A.3    Yi, J.4    Barbet, A.F.5
  • 71
    • 0025001618 scopus 로고
    • Antigenic variation of a relapsing fever borrelia species
    • Barbour, A. G. (1990) Antigenic variation of a relapsing fever Borrelia species. Annu. Rev. Microbiol., 44, 155-171.
    • (1990) Annu. Rev. Microbiol. , vol.44 , pp. 155-171
    • Barbour, A.G.1
  • 72
    • 54149083057 scopus 로고    scopus 로고
    • Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog cluster
    • Tsuru, T. and Kobayashi, I. (2008) Multiple genome comparison within a bacterial species reveals a unit of evolution spanning two adjacent genes in a tandem paralog cluster. Mol. Biol. Evol., 25, 2457-2473.
    • (2008) Mol. Biol. Evol. , vol.25 , pp. 2457-2473
    • Tsuru, T.1    Kobayashi, I.2
  • 77
    • 77952309317 scopus 로고    scopus 로고
    • Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements
    • Furuta, Y., Abe, K. and Kobayashi, I. (2010) Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Res., 38, 2428-2443.
    • (2010) Nucleic Acids Res. , vol.38 , pp. 2428-2443
    • Furuta, Y.1    Abe, K.2    Kobayashi, I.3
  • 78
    • 34147105638 scopus 로고    scopus 로고
    • The evolutionary history of human DNA transposons: Evidence for intense activity in the primate lineage
    • DOI 10.1101/gr.5826307
    • Pace, J. K. 2nd and Feschotte, C. (2007) The evolutionary history of human DNA transposons: evidence for intense activity in the primate lineage. Genome Res., 17, 422-432. (Pubitemid 46556446)
    • (2007) Genome Research , vol.17 , Issue.4 , pp. 422-432
    • Pace II, J.K.1    Feschotte, C.2
  • 79
    • 0035209964 scopus 로고    scopus 로고
    • Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements
    • DOI 10.1105/tpc.13.11.2553
    • Jiang, N. and Wessler, S. R. (2001) Insertion preference of maize and rice miniature inverted repeat transposable elements as revealed by the analysis of nested elements. Plant Cell, 13, 2553-2564. (Pubitemid 33146116)
    • (2001) Plant Cell , vol.13 , Issue.11 , pp. 2553-2564
    • Jiang, N.1    Wessler, S.R.2


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