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Volumn 6, Issue 12, 2011, Pages

Phasevarion mediated epigenetic gene regulation in Helicobacter pylori

Author keywords

[No Author keywords available]

Indexed keywords

DNA METHYLTRANSFERASE; BACTERIAL PROTEIN; DNA;

EID: 82655180443     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0027569     Document Type: Article
Times cited : (90)

References (42)
  • 2
    • 31144461664 scopus 로고    scopus 로고
    • Helicobacter infection and gastric neoplasia
    • Peek RM Jr, Crabtree JE, (2006) Helicobacter infection and gastric neoplasia. J Pathol 208: 233-248.
    • (2006) J Pathol , vol.208 , pp. 233-248
    • Peek Jr., R.M.1    Crabtree, J.E.2
  • 3
    • 0031473580 scopus 로고    scopus 로고
    • Ecology of Helicobacter pylori in the human stomach
    • Blaser MJ, (1997) Ecology of Helicobacter pylori in the human stomach. J Clin Invest 100: 759-762.
    • (1997) J Clin Invest , vol.100 , pp. 759-762
    • Blaser, M.J.1
  • 4
    • 0033768682 scopus 로고    scopus 로고
    • The disease spectrum of Helicobacter pylori: the immunopathogenesis of gastroduodenal ulcer and gastric cancer
    • Ernst PB, Gold BD, (2000) The disease spectrum of Helicobacter pylori: the immunopathogenesis of gastroduodenal ulcer and gastric cancer. Annu Rev Microbiol 54: 615-640.
    • (2000) Annu Rev Microbiol , vol.54 , pp. 615-640
    • Ernst, P.B.1    Gold, B.D.2
  • 5
    • 0036889446 scopus 로고    scopus 로고
    • Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori
    • de Vries N, Duinsbergen D, Kuipers EJ, Pot RG, Wiesenekker P, et al. (2002) Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori. J Bacteriol 184: 6615-6623.
    • (2002) J Bacteriol , vol.184 , pp. 6615-6623
    • de Vries, N.1    Duinsbergen, D.2    Kuipers, E.J.3    Pot, R.G.4    Wiesenekker, P.5
  • 7
    • 0030911789 scopus 로고    scopus 로고
    • Microbial genetics. The tinkerer's evolving tool-box
    • Moxon ER, Thaler DS, (1997) Microbial genetics. The tinkerer's evolving tool-box. Nature 387: 659, 661-652.
    • (1997) Nature , vol.387
    • Moxon, E.R.1    Thaler, D.S.2
  • 8
    • 34548331708 scopus 로고    scopus 로고
    • Phase variable type III restriction-modification systems of host-adapted bacterial pathogens
    • Fox KL, Srikhanta YN, Jennings MP, (2007) Phase variable type III restriction-modification systems of host-adapted bacterial pathogens. Mol Microbiol 65: 1375-1379.
    • (2007) Mol Microbiol , vol.65 , pp. 1375-1379
    • Fox, K.L.1    Srikhanta, Y.N.2    Jennings, M.P.3
  • 9
    • 76949108806 scopus 로고    scopus 로고
    • The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes
    • Srikhanta YN, Fox KL, Jennings MP, (2010) The phasevarion: phase variation of type III DNA methyltransferases controls coordinated switching in multiple genes. Nat Rev Microbiol 8: 196-206.
    • (2010) Nat Rev Microbiol , vol.8 , pp. 196-206
    • Srikhanta, Y.N.1    Fox, K.L.2    Jennings, M.P.3
  • 10
    • 0027324744 scopus 로고
    • Biology of DNA restriction
    • Bickle TA, Kruger DH, (1993) Biology of DNA restriction. Microbiol Rev 57: 434-450.
    • (1993) Microbiol Rev , vol.57 , pp. 434-450
    • Bickle, T.A.1    Kruger, D.H.2
  • 11
    • 0015192625 scopus 로고
    • DNA restrictions and modification mechanisms in bacteria
    • 153-176
    • Boyer HW, (1971) DNA restrictions and modification mechanisms in bacteria. Annu Rev Microbial 25 153-176: 153-176.
    • (1971) Annu Rev Microbial , vol.25 , pp. 153-176
    • Boyer, H.W.1
  • 12
    • 0036880785 scopus 로고    scopus 로고
    • Complex restriction enzymes: NTP-driven molecular motors
    • Bourniquel AA, Bickle TA, (2002) Complex restriction enzymes: NTP-driven molecular motors. Biochimie 84: 1047-1059.
    • (2002) Biochimie , vol.84 , pp. 1047-1059
    • Bourniquel, A.A.1    Bickle, T.A.2
  • 13
    • 0029045067 scopus 로고
    • Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis
    • Meisel A, Mackeldanz P, Bickle TA, Kruger DH, Schroeder C, (1995) Type III restriction endonucleases translocate DNA in a reaction driven by recognition site-specific ATP hydrolysis. Embo J 14: 2958-2966.
    • (1995) Embo J , vol.14 , pp. 2958-2966
    • Meisel, A.1    Mackeldanz, P.2    Bickle, T.A.3    Kruger, D.H.4    Schroeder, C.5
  • 14
    • 0018800362 scopus 로고
    • Methylation and cleavage sequences of the EcoP1 restriction-modification enzyme
    • Bachi B, Reiser J, Pirrotta V, (1979) Methylation and cleavage sequences of the EcoP1 restriction-modification enzyme. J Mol Biol 128: 143-163.
    • (1979) J Mol Biol , vol.128 , pp. 143-163
    • Bachi, B.1    Reiser, J.2    Pirrotta, V.3
  • 15
    • 0024278335 scopus 로고
    • Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants
    • Humbelin M, Suri B, Rao DN, Hornby DP, Eberle H, et al. (1988) Type III DNA restriction and modification systems EcoP1 and EcoP15. Nucleotide sequence of the EcoP1 operon, the EcoP15 mod gene and some EcoP1 mod mutants. J Mol Biol 200: 23-29.
    • (1988) J Mol Biol , vol.200 , pp. 23-29
    • Humbelin, M.1    Suri, B.2    Rao, D.N.3    Hornby, D.P.4    Eberle, H.5
  • 16
    • 17344370012 scopus 로고    scopus 로고
    • The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes
    • Srikhanta YN, Maguire TL, Stacey KJ, Grimmond SM, Jennings MP, (2005) The phasevarion: a genetic system controlling coordinated, random switching of expression of multiple genes. Proc Natl Acad Sci U S A 102: 5547-5551.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 5547-5551
    • Srikhanta, Y.N.1    Maguire, T.L.2    Stacey, K.J.3    Grimmond, S.M.4    Jennings, M.P.5
  • 18
    • 0035015690 scopus 로고    scopus 로고
    • Characterization of four members of a multigene family encoding outer membrane proteins of Helicobacter pylori and their potential for vaccination
    • Peck B, Ortkamp M, Nau U, Niederweis M, Hundt E, et al. (2001) Characterization of four members of a multigene family encoding outer membrane proteins of Helicobacter pylori and their potential for vaccination. Microbes Infect 3: 171-179.
    • (2001) Microbes Infect , vol.3 , pp. 171-179
    • Peck, B.1    Ortkamp, M.2    Nau, U.3    Niederweis, M.4    Hundt, E.5
  • 19
    • 0037388836 scopus 로고    scopus 로고
    • Identification and characterization of Helicobacter pylori genes essential for gastric colonization
    • Kavermann H, Burns BP, Angermuller K, Odenbreit S, Fischer W, et al. (2003) Identification and characterization of Helicobacter pylori genes essential for gastric colonization. J Exp Med 197: 813-822.
    • (2003) J Exp Med , vol.197 , pp. 813-822
    • Kavermann, H.1    Burns, B.P.2    Angermuller, K.3    Odenbreit, S.4    Fischer, W.5
  • 20
    • 41949093947 scopus 로고    scopus 로고
    • Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells
    • Giannakis M, Chen SL, Karam SM, Engstrand L, Gordon JI, (2008) Helicobacter pylori evolution during progression from chronic atrophic gastritis to gastric cancer and its impact on gastric stem cells. Proc Natl Acad Sci U S A 105: 4358-4363.
    • (2008) Proc Natl Acad Sci U S A , vol.105 , pp. 4358-4363
    • Giannakis, M.1    Chen, S.L.2    Karam, S.M.3    Engstrand, L.4    Gordon, J.I.5
  • 21
    • 0027252455 scopus 로고
    • Cloning and genetic characterization of the Helicobacter pylori and Helicobacter mustelae flaB flagellin genes and construction of H. pylori flaA- and flaB-negative mutants by electroporation-mediated allelic exchange
    • Suerbaum S, Josenhans C, Labigne A, (1993) Cloning and genetic characterization of the Helicobacter pylori and Helicobacter mustelae flaB flagellin genes and construction of H. pylori flaA- and flaB-negative mutants by electroporation-mediated allelic exchange. J Bacteriol 175: 3278-3288.
    • (1993) J Bacteriol , vol.175 , pp. 3278-3288
    • Suerbaum, S.1    Josenhans, C.2    Labigne, A.3
  • 22
    • 0026096795 scopus 로고
    • Identification, characterization, and spatial localization of two flagellin species in Helicobacter pylori flagella
    • Kostrzynska M, Betts JD, Austin JW, Trust TJ, (1991) Identification, characterization, and spatial localization of two flagellin species in Helicobacter pylori flagella. J Bacteriol 173: 937-946.
    • (1991) J Bacteriol , vol.173 , pp. 937-946
    • Kostrzynska, M.1    Betts, J.D.2    Austin, J.W.3    Trust, T.J.4
  • 23
    • 0029019564 scopus 로고
    • Comparative ultrastructural and functional studies of Helicobacter pylori and Helicobacter mustelae flagellin mutants: both flagellin subunits, FlaA and FlaB, are necessary for full motility in Helicobacter species
    • Josenhans C, Labigne A, Suerbaum S, (1995) Comparative ultrastructural and functional studies of Helicobacter pylori and Helicobacter mustelae flagellin mutants: both flagellin subunits, FlaA and FlaB, are necessary for full motility in Helicobacter species. J Bacteriol 177: 3010-3020.
    • (1995) J Bacteriol , vol.177 , pp. 3010-3020
    • Josenhans, C.1    Labigne, A.2    Suerbaum, S.3
  • 24
    • 0030002653 scopus 로고    scopus 로고
    • Colonization of gnotobiotic piglets by Helicobacter pylori deficient in two flagellin genes
    • Eaton KA, Suerbaum S, Josenhans C, Krakowka S, (1996) Colonization of gnotobiotic piglets by Helicobacter pylori deficient in two flagellin genes. Infect Immun 64: 2445-2448.
    • (1996) Infect Immun , vol.64 , pp. 2445-2448
    • Eaton, K.A.1    Suerbaum, S.2    Josenhans, C.3    Krakowka, S.4
  • 25
    • 20644467446 scopus 로고    scopus 로고
    • Helicobacter pylori flagellar hook-filament transition is controlled by a FliK functional homolog encoded by the gene HP0906
    • Ryan KA, Karim N, Worku M, Penn CW, O'Toole PW, (2005) Helicobacter pylori flagellar hook-filament transition is controlled by a FliK functional homolog encoded by the gene HP0906. J Bacteriol 187: 5742-5750.
    • (2005) J Bacteriol , vol.187 , pp. 5742-5750
    • Ryan, K.A.1    Karim, N.2    Worku, M.3    Penn, C.W.4    O'Toole, P.W.5
  • 26
    • 0033552961 scopus 로고    scopus 로고
    • Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori
    • Alm RA, Ling LS, Moir DT, King BL, Brown ED, et al. (1999) Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori. Nature 397: 176-180.
    • (1999) Nature , vol.397 , pp. 176-180
    • Alm, R.A.1    Ling, L.S.2    Moir, D.T.3    King, B.L.4    Brown, E.D.5
  • 28
    • 0035956977 scopus 로고    scopus 로고
    • Comparative genomics of the restriction-modification systems in Helicobacter pylori
    • Lin LF, Posfai J, Roberts RJ, Kong H, (2001) Comparative genomics of the restriction-modification systems in Helicobacter pylori. Proc Natl Acad Sci U S A 98: 2740-2745.
    • (2001) Proc Natl Acad Sci U S A , vol.98 , pp. 2740-2745
    • Lin, L.F.1    Posfai, J.2    Roberts, R.J.3    Kong, H.4
  • 29
    • 0034284411 scopus 로고    scopus 로고
    • Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome
    • Kong H, Lin LF, Porter N, Stickel S, Byrd D, et al. (2000) Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome. Nucleic Acids Res 28: 3216-3223.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3216-3223
    • Kong, H.1    Lin, L.F.2    Porter, N.3    Stickel, S.4    Byrd, D.5
  • 30
    • 0035155797 scopus 로고    scopus 로고
    • Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695
    • Vitkute J, Stankevicius K, Tamulaitiene G, Maneliene Z, Timinskas A, et al. (2001) Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695. J Bacteriol 183: 443-450.
    • (2001) J Bacteriol , vol.183 , pp. 443-450
    • Vitkute, J.1    Stankevicius, K.2    Tamulaitiene, G.3    Maneliene, Z.4    Timinskas, A.5
  • 31
    • 37449011458 scopus 로고    scopus 로고
    • Functional analysis of the M.HpyAIV DNA-methyltransferase of Helicobacter pylori
    • Skoglund A, Bjorkholm B, Nilsson C, Andersson A, Jernberg C, et al. (2007) Functional analysis of the M.HpyAIV DNA-methyltransferase of Helicobacter pylori. J Bacteriol 189: 8914-8921.
    • (2007) J Bacteriol , vol.189 , pp. 8914-8921
    • Skoglund, A.1    Bjorkholm, B.2    Nilsson, C.3    Andersson, A.4    Jernberg, C.5
  • 32
    • 0037072823 scopus 로고    scopus 로고
    • Colonization of germ-free transgenic mice with genotyped Helicobacter pylori strains from a case-control study of gastric cancer reveals a correlation between host responses and HsdS components of type I restriction-modification systems
    • Bjorkholm BM, Guruge JL, Oh JD, Syder AJ, Salama N, et al. (2002) Colonization of germ-free transgenic mice with genotyped Helicobacter pylori strains from a case-control study of gastric cancer reveals a correlation between host responses and HsdS components of type I restriction-modification systems. J Biol Chem 277: 34191-34197.
    • (2002) J Biol Chem , vol.277 , pp. 34191-34197
    • Bjorkholm, B.M.1    Guruge, J.L.2    Oh, J.D.3    Syder, A.J.4    Salama, N.5
  • 33
    • 33748558777 scopus 로고    scopus 로고
    • High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae
    • Bayliss CD, Callaghan MJ, Moxon ER, (2006) High allelic diversity in the methyltransferase gene of a phase variable type III restriction-modification system has implications for the fitness of Haemophilus influenzae. Nucleic Acids Res 34: 4046-4059.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4046-4059
    • Bayliss, C.D.1    Callaghan, M.J.2    Moxon, E.R.3
  • 34
    • 34548569008 scopus 로고    scopus 로고
    • Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression
    • Fox KL, Dowideit SJ, Erwin AL, Srikhanta YN, Smith AL, et al. (2007) Haemophilus influenzae phasevarions have evolved from type III DNA restriction systems into epigenetic regulators of gene expression. Nucleic Acids Res 35: 5242-5252.
    • (2007) Nucleic Acids Res , vol.35 , pp. 5242-5252
    • Fox, K.L.1    Dowideit, S.J.2    Erwin, A.L.3    Srikhanta, Y.N.4    Smith, A.L.5
  • 36
    • 2442678870 scopus 로고    scopus 로고
    • Helicobacter pylori flagellin evades toll-like receptor 5-mediated innate immunity
    • Gewirtz AT, Yu Y, Krishna US, Israel DA, Lyons SL, et al. (2004) Helicobacter pylori flagellin evades toll-like receptor 5-mediated innate immunity. J Infect Dis 189: 1914-1920.
    • (2004) J Infect Dis , vol.189 , pp. 1914-1920
    • Gewirtz, A.T.1    Yu, Y.2    Krishna, U.S.3    Israel, D.A.4    Lyons, S.L.5
  • 37
    • 0344234277 scopus 로고    scopus 로고
    • Helicobacter pylori flagellins have very low intrinsic activity to stimulate human gastric epithelial cells via TLR5
    • Lee SK, Stack A, Katzowitsch E, Aizawa SI, Suerbaum S, et al. (2003) Helicobacter pylori flagellins have very low intrinsic activity to stimulate human gastric epithelial cells via TLR5. Microbes Infect 5: 1345-1356.
    • (2003) Microbes Infect , vol.5 , pp. 1345-1356
    • Lee, S.K.1    Stack, A.2    Katzowitsch, E.3    Aizawa, S.I.4    Suerbaum, S.5
  • 38
    • 78650083653 scopus 로고    scopus 로고
    • Complexomics study of two Helicobacter pylori strains of two pathological origins: potential targets for vaccine development and new insight in bacteria metabolism
    • Bernarde C, Lehours P, Lasserre JP, Castroviejo M, Bonneu M, et al. (2010) Complexomics study of two Helicobacter pylori strains of two pathological origins: potential targets for vaccine development and new insight in bacteria metabolism. Mol Cell Proteomics 9: 2796-2826.
    • (2010) Mol Cell Proteomics , vol.9 , pp. 2796-2826
    • Bernarde, C.1    Lehours, P.2    Lasserre, J.P.3    Castroviejo, M.4    Bonneu, M.5
  • 39
    • 24344498726 scopus 로고    scopus 로고
    • Restriction of DNA encoding selectable markers decreases the transformation efficiency of Helicobacter pylori
    • Gorrell RJ, Yang J, Kusters JG, van Vliet AH, Robins-Browne RM, (2005) Restriction of DNA encoding selectable markers decreases the transformation efficiency of Helicobacter pylori. FEMS Immunol Med Microbiol 44: 213-219.
    • (2005) FEMS Immunol Med Microbiol , vol.44 , pp. 213-219
    • Gorrell, R.J.1    Yang, J.2    Kusters, J.G.3    van Vliet, A.H.4    Robins-Browne, R.M.5
  • 40
    • 4544341015 scopus 로고    scopus 로고
    • Linear models and empirical bayes methods for assessing differential expression in microarray experiments
    • Article3
    • Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
    • (2004) Stat Appl Genet Mol Biol , vol.3
    • Smyth, G.K.1
  • 41
    • 0038048164 scopus 로고    scopus 로고
    • Statistical issues in cDNA microarray data analysis
    • Smyth GK, Yang YH, Speed T, (2003) Statistical issues in cDNA microarray data analysis. Methods Mol Biol 224: 111-136.
    • (2003) Methods Mol Biol , vol.224 , pp. 111-136
    • Smyth, G.K.1    Yang, Y.H.2    Speed, T.3
  • 42
    • 77957918692 scopus 로고    scopus 로고
    • Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer
    • Fischer W, Windhager L, Rohrer S, Zeiller M, Karnholz A, et al. (2010) Strain-specific genes of Helicobacter pylori: genome evolution driven by a novel type IV secretion system and genomic island transfer. Nucleic Acids Res 38: 6089-6101.
    • (2010) Nucleic Acids Res , vol.38 , pp. 6089-6101
    • Fischer, W.1    Windhager, L.2    Rohrer, S.3    Zeiller, M.4    Karnholz, A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.