Evidence of horizontal transfer of the EcoO109I restriction-modification gene to Escherichia coli chromosomal DNA

Journal of Bacteriology

Volumn 181, Issue 21, 1999, Pages 6822-6827

  Kita, Keiko ^a   Tsuda, Junko ^a   Kato, Toshinobu ^a   Okamoto, Kenji ^a   Yanase, Hideshi ^a   Tanaka, Masashi ^b  

^a TOTTORI UNIVERSITY   (Japan)

^b GIFU INTERNATIONAL INSTITUTE OF BIOTECHNOLOGY   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

AMINO ACID; DNA; ENDONUCLEASE; METHYLTRANSFERASE; NUCLEOTIDE;

AMINO ACID SEQUENCE; ARTICLE; BACTERIOPHAGE; CHROMOSOME; ESCHERICHIA COLI; GENE; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; POLYACRYLAMIDE GEL ELECTROPHORESIS; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

ESCHERICHIA COLI;

EID: 0032703783     PISSN: 00219193     EISSN: None     Source Type: Journal    
DOI: 10.1128/jb.181.21.6822-6827.1999     Document Type: Article

References (40)

1. Anton, B. P., D. F. Heiter, J. S. Benner, E. J. Hess, L. Greenough, L. S. Moran, B. E. Slatko, and J. E. Brooks. 1997. Cloning and characterization of the BglII restriction-modification system reveals a possible evolutionary footprint. Gene 187:19-27.
2. Blattner, F. R., G. Plunkett III, C. A. Bloch, N. T. Perna, V. Burland, M. Riley, J. Collado-Vides, J. D. Glasner, C. K. Rode, G. F. Mayhew, J. Gregor, N. W. Davis, H. A. Kirkpatrick, M. A. Goeden, D. J. Rose, B. Man, and Y. Shao. 1997. The complete genome sequence of Escherichia coli K-12. Science 277:1453-1461.
3. Bougueleret, L., M. Schwarzstein, A. Tsugita, and M. Zabeau. 1984. Characterization of the genes coding for the EcoRV restriction and modification system of Escherichia coli. Nucleic Acids Res. 12:3659-3676.
4. Boyer, H. W., and D. Roulland-Dussoix. 1969. A complementation analysis of the restriction and modification of DNA in Escherichia coli. J. Mol. Biol. 41:459-472.
5. Brassard, S., H. Paquet, and P. H. Riym. 1992. A transposon-like sequence adjacent to the AccI restriction-modification operon. Gene 157:69-72.
6. Dusterhoft, A., D. Erdmann, and M. Kroger. 1991. Isolation and genetic structure of the AvaII isoschizomeric restriction-modification system HgiBI from Herpetosiphon giganteus Hpg5: M.HgiBI reveals high homology to M.BanI. Nucleic Acids Res. 19:3207-3211.
7. Erdmann, D., G. Horst, A. Dusterhoft, and M. Kroger. 1992. Stepwise cloning and genetic organization of the seemingly unclonable HgiCII restriction-modification system from Herpetosiphon giganteus strain Hpg9, using PCR technique. Gene 117:15-22.
8. Erdmann, D., and M. Kroger. 1992. DNA sequence of RM system HgiEI. EMBL Data Library accession no. X55142.
9. Halling, C., R. Calendar, G. E. Christie, E. C. Dale, G. Deho, S. Finkel, J. Flensburg, D. Ghisotti, M. L. Kahn, K. B. Lane, C. S. Lin, B. H. Lindqvist, L. S. Pierson III, E. W. Six, M. G. Sunshine, and R. Ziermann. 1990. DNA sequence of satellite bacteriophage P4. Nucleic Acids Res. 18:1649.
10. Hashimoto-Gotoh, T., A. Tsujimura, K. Kuriyama, and S. Matsuda. 1993. Construction and characterization of new host-vector systems for the enforcement-cloning method. Gene 137:211-216.
11. Inoue, S., M. Sunshine, E. W. Six, and M. Inoue. 1991. Retronphage φR73: an E. coli phage that contains a retroelement and integrates into a tRNA gene. Science 256:969-971.
12. Ives, C. L., P. D. Nathan, and J. E. Brooks. 1992. Regulation of the BamHI restriction-modification system by a small intergenic open reading frame, bam- HIC, in both Escherichia coli and Bacillus subtilis. J. Bacteriol. 174:7194-7201.
13. Karreman, C., and A. de Waard. 1988. Cloning and complete nucleotide sequences of the type II restriction-modification genes of Salmonella infantis. J. Bacteriol. 170:2527-2532.
14. Kita, K., H. Kotani, H. Sugisaki, and M. Takanami. 1989. The FokI restriction-modification system. I. Organization and nucleotide sequences of the restriction and modification genes. J. Biol. Chem. 264:5751-5766.
15. Kita, K., M. Suisha, H. Kotani, H. Yanase, and N. Kato. 1992. Cloning and sequence analysis of the StsI restriction-modification gene: presence of homology to FokI restriction-modification enzymes. Nucleic Acids Res. 20:4167-4172.
16. Kossykh, V., A. Repyk, A. Kaliman, and Y. Buuryanov. 1989. Nucleotide sequence of the EcoRII restriction endonuclease gene. Biochim. Biophys. Acta 1009:290-292.
17. Lee, K. F., P. C. Shaw, S. J. Picone, G. G. Wilson, and K. D. Lunnen. 1998. Sequence comparison of the EcoHK31I and EaeI restriction-modification systems suggests an intergenic transfer of genetic material. Biol. Chem. 379:437-441.
18. Lereclus, D., H. Agaisse, M. Gominet, S. Salamitou, and V. Sanchis. 1996. Identification of a Bacillus thuringiensis gene that positively regulates transcription of the phosphatidylinositol-specific phospholipase C gene at the onset of the stationary phase. J. Bacteriol. 178:2749-2756.
19. Lindqvist, B. H., G. Deho, and R. Calendar. 1993. Mechanisms of genome propagation and helper exploitation by satellite phage P4. Microbiol. Rev. 57:683-702.
20. Matsudaira, P. 1987. Sequence from picomole quantities of proteins electroblotted onto polyvinylidene difluoride membrane. J. Biol. Chem. 262:10035-10038.
21. Mise, K., and K. Nakajima. 1985. Restriction endonuclease EcoO109 from Escherichia coli H709c with heptanucleotide recognition site 5′-PuG/GNC-CPy-3′. Gene 36:363-367.
22. Newman, A. K., R. A. Rubin, S.-H. Kim, and P. Modrich. 1981. DNA sequences of the structural genes for EcoRI DNA restriction and modification enzymes. J. Biol. Chem. 256:2131-2139.
23. Ørskov, I., F. Ørskov, B. Jann, and K. Jann. 1977. Serology, chemistry, and genetics of O and K antigens of Escherichia coli. Bacteriol. Rev. 41:667-710.
24. Posfai, J., A. S. Bhagwat, G. Posfai, and R. J. Roberts. 1989. Predictive motifs derived from cytosine methyltransferases. Nucleic Acids Res. 17:2421-2435.
25. Reimmann, C., R. Moore, S. Little, A. Savioz, N. S. Willetts, and D. Haas, 1989. Genetic structure, function and regulation of the transposable element IS21. Mol. Gen. Genet. 215:416-424.
26. Rina, M., F. Caufrier, M. Markaki, K. Mavromatis, M. Kokkinidis, and V. Bouriotis. 1997. Cloning and characterization of the gene encoding PspPI methyltransferase from the Antarctic psychrotroph Psychrobacter sp. strain TA137. Predicted interaction with DNA and organization of the variable region. Gene 197:353-360.
27. Roberts, R. J., and D. Macelis. 1999. REBASE-restriction enzymes and methylases. Nucleic Acids Res. 27:312-313.
28. Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd ed. Cold Spring Harbor Laboratory, Cold Spring Harbor, N.Y.
29. Schnetz, K., and B. Rak. 1988. Cleavage by EcoO1091 and DraII is inhibited by overlapping dcm methylation. Nucleic Acids Res. 16:1623.
30. Shore, D., G. Deho, J. Tsipis, and R. Goldstein. 1978. Determination of capsid size by satellite bacteriophage P4. Proc. Natl. Acad. Sci. USA 75:400-404.
31. Stankevicius, K., P. Povilionis, A. Lubys, S. Menkevicius, and A. Janulaitis. 1995. Cloning and characterization of the unusual restriction-modification system comprising two restriction endonucleases and one methyltransferase. Gene 157:49-53.
32. Szilak, L., P. Venetianer, and A. Kiss. 1990. Cloning and nucleotide sequences of the genes coding for Sau96I restriction modification enzymes. Nucleic Acids Res. 18:4659-4664.
33. Tao, T., J. C. Bourne, and R. M. Blumenthal. 1991. A family of regulatory genes associated with type II restriction-modification systems. J. Bacteriol. 173:1367-1375.
34. s-enforcement cloning vectors with a synthetic rpsL gene. Gene 121:25-33.
35. Vaisvilla, R., G. Vilkaitis, and A. Janulaitis. 1995. Identification of a gene encoding a DNA invertase-like enzyme adjacent to the PaeR7I restriction-modification system. Gene 157:81-84.
36. Van de Guchte, M., C. Daly, G. F. Fitzgerald, and E. K. Arendt. 1994. Identification of the putative repressor-encoding gene cI of the temperate lactococcal bacteriophage Tuc2009. Gene 144:93-95.
37. Wilson, G., and N. E. Murray. 1991. Restriction and modification systems. Annu. Rev. Genet. 25:585-627.
38. Wood, H. E., K. M. Devine, and D. J. McConnell. 1990. Characterization of a repressor gene (xre) and a temperature-sensitive allele from the Bacillus subtilis prophage, PBSX. Gene 96:83-88.
39. Yanisch-Perron, C., J. Vieira, and J. Messing. 1985. Improved M13 phage cloning vectors and host strains: nucleotide sequences of the M13mp18 and pUC19 vectors. Gene 33:103-119.
40. Zakharova, M. Z., I. V. Beletskaya, A. N. Kravetz, A. V. Pertzev, S. G. Mayorov, M. G. Shlyapnikov, and A. S. Solonin. 1998. Cloning and sequence analysis of the plasmid-borne genes encoding the Eco29kI restriction and modification enzymes. Gene 208:177-182.