Translocation dynamics of freely jointed Lennard-Jones chains into adsorbing pores

Journal of Chemical Physics

Volumn 137, Issue 14, 2012, Pages

  Rasmussen, Christopher J ^a   Vishnyakov, Aleksey ^a   Neimark, Alexander V ^a  

^a The State University of New Jersey   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADSORPTION STRENGTH; CHAIN DIFFUSION; ENERGY LANDSCAPE; ENERGY MINIMA; ENERGY PROFILE; GAUGE CELL; HARD WALLS; LENNARD-JONES CHAINS; MONTE CARLO SIMULATION; NON-MONOTONIC DEPENDENCE; POLYMER CHAINS; POLYMER TRANSLOCATION; STERIC HINDRANCES; SUBCHAINS; TRANSLOCATION DYNAMICS; TWO-REGIME;

ADSORPTION; FREE ENERGY; MONTE CARLO METHODS; TIMING JITTER;

NANOPORES;

EID: 84867532162     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4754632     Document Type: Article

References (68)

1. M. Muthukumar, Polymer Translocation (CRC Press, Boca Raton, FL, 2011).
2. B. Alberts, A. Johnson, J. Lewis, M. Raff, K. Roberts, and P. Walter, Molecular Biology of the Cell, 4th ed. (Garland Science, 2002).
3. S. Casjens, Virus Structure and Assembly, 1st ed. (Jones Bartlett, 1985).
4. G. Schatz and B. Dobberstein, Science 271 (5255), 1519 (1996). 10.1126/science.271.5255.1519
5. A. Meller, J. Phys.: Condens. Matter 15 (17), R581 (2003). 10.1088/0953-8984/15/17/202
6. H. W. C. Postma, Nano Lett. 10 (2), 420 (2010). 10.1021/nl9029237
7. H. Pasch and B. Trathnigg, HPLC of Polymers (Springer-Verlag, Berlin, 1999).
8. C. A. Merchant, K. Healy, M. Wanunu, V. Ray, N. Peterman, J. Bartel, M. D. Fischbein, K. Venta, Z. Luo, A. T. C. Johnson, and M. Drndić, Nano Lett. 10 (8), 2915 (2010); 10.1021/nl101046t
9. S. Alapati, D. V. Fernandes, and Y. K. Suh, J. Chem. Phys. 135 (5), 055103 (2011). 10.1063/1.3622490
10. M. Bernaschi, S. Melchionna, S. Succi, M. Fyta, and E. Kaxiras, Nano Lett. 8 (4), 1115 (2008). 10.1021/nl073251f
11. P. J. Park and W. Sung, J. Chem. Phys. 108 (7), 3013 (1998). 10.1063/1.475688
12. K. Kiran Kumar and K. L. Sebastian, Phys. Rev. E 62 (5), 7536 (2000). 10.1103/PhysRevE.62.7536
13. S. Yang and A. V. Neimark, J. Chem. Phys. 136 (21), 214901 (2012). 10.1063/1.4720505
14. A. Milchev, K. Binder, and A. Bhattacharya, J. Chem. Phys. 121 (12), 6042 (2004). 10.1063/1.1785776
15. M. Muthukumar, J. Chem. Phys. 111 (22), 10371 (1999). 10.1063/1.480386
16. W. Sung and P. J. Park, Phys. Rev. Lett. 77 (4), 783 (1996). 10.1103/PhysRevLett.77.783
17. D. K. Lubensky and D. R. Nelson, Biophys. J. 77 (4), 1824 (1999); 10.1016/S0006-3495(99)77027-X
18. J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E 65 (1), 011802 (2001). 10.1103/PhysRevE.65.011802
19. S. Mirigian, Y. Wang, and M. Muthukumar, J. Chem. Phys. 137 (6), 064904 (2012). 10.1063/1.4742970
20. C. Y. Kong and M. Muthukumar, J. Chem. Phys. 120 (7), 3460 (2004). 10.1063/1.1642588
21. R. Metzler and J. Klafter, Biophys. J. 85 (4), 2776 (2003). 10.1016/S0006-3495(03)74699-2
22. V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E 81 (3), 031803 (2010); 10.1103/PhysRevE.81.031803
23. D. Wei, W. Yang, X. Jin, and Q. Liao, J. Chem. Phys. 126 (20), 204901 (2007); 10.1063/1.2735627
24. V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E 78 (6), 061803 (2008). 10.1103/PhysRevE.78.061803
25. P. Tian and G. D. Smith, J. Chem. Phys. 119 (21), 11475 (2003). 10.1063/1.1621614
26. J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis, Phys. Rev. E 83 (1), 011802 (2011). 10.1103/PhysRevE.83.011802
27. J. L. A. Dubbeldam, V. G. Rostiashvili, A. Milchev, and T. A. Vilgis, Phys. Rev. E 85 (4), 041801 (2012). 10.1103/PhysRevE.85.041801
28. F. Kapahnke, U. Schmidt, D. W. Heermann, and M. Weiss, J. Chem. Phys. 132 (16), 164904 (2010). 10.1063/1.3400650
29. S.-S. Chern, A. E. Cárdenas, and R. D. Coalson, J. Chem. Phys. 115 (16), 7772 (2001); 10.1063/1.1392367
30. J. K. Wolterink, G. T. Barkema, and D. Panja, Phys. Rev. Lett. 96 (20), 208301 (2006). 10.1103/PhysRevLett.96.208301
31. J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Phys. Rev. E 76 (1), 010801 (2007). 10.1103/PhysRevE.76.010801
32. D. B. Wells, V. Abramkina, and A. Aksimentiev, J. Chem. Phys. 127 (12), 125101 (2007). 10.1063/1.2770738
33. A. Milchev, J.Phys.: Condens. Matter 23 (10), 103101 (2011). 10.1088/0953-8984/23/10/103101
34. M. Muthukumar, J. Chem. Phys. 118 (11), 5174 (2003). 10.1063/1.1553753
35. P.-G. de Gennes, Scaling Concepts in Polymer Physics (Cornell University Press, 1979).
36. Y. Brun and P. Alden, J. Chromatogr. A 966 (1-2), 25 (2002). 10.1016/S0021-9673(02)00705-7
37. C. J. Rasmussen, A. Vishnyakov, and A. V. Neimark, J. Chem. Phys. 135 (21), 214109 (2011). 10.1063/1.3657438
38. A. V. Neimark and A. Vishnyakov, Phys. Rev. E 62 (4), 4611 (2000); 10.1103/PhysRevE.62.4611
39. A. V. Neimark and A. Vishnyakov, J. Chem. Phys. 122 (23), 234108 (2005). 10.1063/1.1931663
40. S. K. Kumar, I. Szleifer, and A. Z. Panagiotopoulos, Phys. Rev. Lett. 66 (22), 2935 (1991). 10.1103/PhysRevLett.66.2935
41. C. J. Rasmussen, A. Vishnyakov, and A. V. Neimark, Adsorption 17 (1), 265 (2011). 10.1007/s10450-011-9325-7
42. C. J. Rasmussen, A. Vishnyakov, M. Thommes, B. M. Smarsly, F. Kleitz, and A. V. Neimark, Langmuir 26 (12), 10147 (2010). 10.1021/la100268q
43. A. V. Neimark and A. Vishnyakov, J. Phys. Chem. B 109 (12), 5962 (2005); 10.1021/jp0464066
44. A. V. Neimark and A. Vishnyakov, J. Chem. Phys. 122 (17), 174508 (2005); 10.1063/1.1888389
45. A. V. Neimark and A. Vishnyakov, J. Chem. Phys. 122 (5), 054707 (2005); 10.1063/1.1829040
46. A. Vishnyakov and A. V. Neimark, J. Chem. Phys. 119 (18), 9755 (2003). 10.1063/1.1615760
47. A. V. Neimark, P. I. Ravikovitch, and A. Vishnyakov, Phys. Rev. E 65 (3), 031505 (2002); 10.1103/PhysRevE.65.031505
48. A. V. Neimark and A. Vishnyakov, J. Phys. Chem. B 110 (19), 9403 (2006); 10.1021/jp056407d
49. A. Vishnyakov and A. V. Neimark, J. Phys. Chem. B 105 (29), 7009 (2001); 10.1021/jp003994o
50. A. Vishnyakov and A. V. Neimark, Langmuir 19 (8), 3240 (2003). 10.1021/la0269107
51. P. Kowalczyk, A. Ciach, and A. V. Neimark, Langmuir 24 (13), 6603 (2008). 10.1021/la800406c
52. J. I. Siepmann and D. Frenkel, Mol. Phys. 75 (1), 59 (1992). 10.1080/00268979200100061
53. H. Flyvbjerg and H. G. Petersen, J. Chem. Phys. 91 (1), 461 (1989). 10.1063/1.457480
54. D. R. Kent, R. P. Muller, A. G. Anderson, W. A. Goddard, and M. T. Feldmann, J. Comput. Chem. 28 (14), 2309 (2007). 10.1002/jcc.20746
55. J. Gao and J. H. Weiner, J. Chem. Phys. 91 (5), 3168 (1989). 10.1063/1.456937
56. S. K. Kumar, J. Chem. Phys. 96 (2), 1490 (1992). 10.1063/1.462183
57. P. Grassberger and R. Hegger, J. Phys.: Condens. Matter 7 (16), 3089 (1995). 10.1088/0953-8984/7/16/005
58. M. S. A. Baksh and R. T. Yang, AIChE J. 37 (6), 923 (1991). 10.1002/aic.690370615
59. T. Spyriouni, I. G. Economou, and D. N. Theodorou, Macromolecules 30 (16), 4744 (1997); 10.1021/ma970178e
60. A. V. Neimark, P. I. Ravikovitch, M. Grün, F. Schüth, and K. K. Unger, J. Colloid Interface Sci. 207 (1), 159 (1998). 10.1006/jcis.1998.5748
61. C. J. Rasmussen, G. Y. Gor, and A. V. Neimark, Langmuir 28 (10), 4702 (2012). 10.1021/la300078k
62. J. Li and D. S. Talaga, J. Phys.: Condens. Matter 22 (45), 454129 (2010). 10.1088/0953-8984/22/45/454129
63. W. Radke, in Macromolecular Engineering, edited by, K. Matyjaszewski, Y. Gnanou, and, L. Leibler, (Wiley-VCH, 2007), p. 1881.
64. A. Bhattacharya, W. H. Morrison, K. Luo, T. Ala-Nissila, S. C. Ying, A. Milchev, and K. Binder, Eur. Phys. J. E 29 (4), 423 (2009). 10.1140/epje/i2009- 10495-5
65. O. V. Krasilnikov, C. G. Rodrigues, and S. M. Bezrukov, Phys. Rev. Lett. 97 (1), 018301 (2006). 10.1103/PhysRevLett.97.018301
66. A. Milchev, J. L. A. Dubbeldam, V. G. Rostiashvili, and T. A. Vilgis, Int. J. Transp. Phenom. 1161, 95 (2009). 10.1111/j.1749-6632.2008.04068.x
67. A. J. Storm, J. H. Chen, H. W. Zandbergen, and C. Dekker, Phys. Rev. E 71 (5), 051903 (2005); 10.1103/PhysRevE.71.051903
68. A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J.-F. Joanny, and C. Dekker, Nano Lett. 5 (7), 1193 (2005). 10.1021/nl048030d