Unforced polymer translocation compared to the forced case

Physical Review E - Statistical, Nonlinear, and Soft Matter Physics

Volumn 81, Issue 3, 2010, Pages

  Lehtola, V V ^a   Linna, R P ^a   Kaski, K ^a  

^a AALTO UNIVERSITY   (Finland)

Author keywords

[No Author keywords available]

Indexed keywords

EQUILIBRIUM THEORY; HYDRODYNAMIC MODES; LANGEVIN DYNAMICS; MEAN SQUARED DISPLACEMENT; POISSONIAN; POLYMER TRANSLOCATION; PORE DESIGN; SCALING BEHAVIOR; SCALING RELATIONS; SIMPLE MODEL; SIMPLIFIED MODELS; SPEED-UPS; STOCHASTIC ROTATION DYNAMICS; THREE DIMENSIONS; TRANSFER PROBABILITY; TRANSITION TIME; TRANSLOCATION DYNAMICS; TRANSLOCATION PROCESS; TWO DIMENSIONS (2D); WAITING TIME DISTRIBUTIONS;

FLUID DYNAMICS; HYDRODYNAMICS; THREE DIMENSIONAL;

POLYMERS;

EID: 77950127084     PISSN: 15393755     EISSN: 15502376     Source Type: Journal    
DOI: 10.1103/PhysRevE.81.031803     Document Type: Article

References (35)

1. B. Alberts, Molecular Biology of the Cell (Garland Publishing, New York, 1994).
2. A. Meller, L. Nivon, and D. Branton, Phys. Rev. Lett. 86, 3435 (2001). 10.1103/PhysRevLett.86.3435
3. A. Meller and D. Branton, Electrophoresis 23, 2583 (2002). 10.1002/1522-2683(200208)23:16<2583::AID-ELPS2583>3.0.CO;2-H
4. J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, Proc. Natl. Acad. Sci. U.S.A. 93, 13770 (1996). 10.1073/pnas.93.24.13770
5. W. Storm, Nano Lett. 5, 1193 (2005). 10.1021/nl048030d
6. M. van der Laan, Nat. Cell Biol. 9, 1152 (2007). 10.1038/ncb1635
7. S. M. Simon, C. S. Peskin, and G. F. Oster, Proc. Natl. Acad. Sci. U.S.A. 89, 3770 (1992). 10.1073/pnas.89.9.3770
8. M. Bates, M. Burns, and A. Meller, Biophys. J. 84, 2366 (2003). 10.1016/S0006-3495(03)75042-5
9. J. Chuang, Y. Kantor, and M. Kardar, Phys. Rev. E 65, 011802 (2001). 10.1103/PhysRevE.65.011802
10. K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 124, 034714 (2006). 10.1063/1.2161189
11. I. Huopaniemi, K. Luo, T. Ala-Nissila, and S.-C. Ying, J. Chem. Phys. 125, 124901 (2006). 10.1063/1.2357118
12. J. L. A. Dubbeldam, A. Milchev, V. G. Rostiashvili, and T. A. Vilgis, Phys. Rev. E 76, 010801 (R) (2007). 10.1103/PhysRevE.76.010801
13. D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 19, 432202 (2007). 10.1088/0953-8984/19/43/432202
14. S. Guillouzic and G. W. Slater, Phys. Lett. A 359, 261 (2006). 10.1016/j.physleta.2006.06.042
15. I. Ali and J. M. Yeomans, J. Chem. Phys. 123, 234903 (2005). 10.1063/1.2138702
16. M. G. Gauthier and G. W. Slater, Phys. Rev. E 79, 021802 (2009). 10.1103/PhysRevE.79.021802
17. K. Luo, S. T. T. Ollila, I. Huopaniemi, T. Ala-Nissila, P. Pomorski, M. Karttunen, S.-C. Ying, and A. Bhattacharya, Phys. Rev. E 78, 050901 (R) (2008). 10.1103/PhysRevE.78.050901
18. D. Wei, W. Yang, X. Jin, and Q. Liao, J. Chem. Phys. 126, 204901 (2007). 10.1063/1.2735627
19. A. Milchev, K. Binder, and A. Bhattacharya, J. Chem. Phys. 121, 6042 (2004). 10.1063/1.1785776
20. V. V. Lehtola, R. P. Linna, and K. Kaski, Phys. Rev. E 78, 061803 (2008). 10.1103/PhysRevE.78.061803
21. V. V. Lehtola, R. P. Linna, and K. Kaski, EPL 85, 58006 (2009). 10.1209/0295-5075/85/58006
22. T. Sakaue, Phys. Rev. E 76, 021803 (2007). 10.1103/PhysRevE.76.021803
23. M. Fyta, S. Melchionna, S. Succi, and E. Kaxiras, Phys. Rev. E 78, 036704 (2008). 10.1103/PhysRevE.78.036704
24. W. Sung and P. J. Park, Phys. Rev. Lett. 77, 783 (1996). 10.1103/PhysRevLett.77.783
25. M. Muthukumar, J. Chem. Phys. 111, 10371 (1999). 10.1063/1.480386
26. E. Eisenriegler, Polymers Near Surfaces (World Scientific, Singapore, 1993).
27. W. van Gunsteren and H. Berendsen, Mol. Phys. 34, 1311 (1977). 10.1080/00268977700102571
28. A. Malevanets and R. Kapral, J. Chem. Phys. 110, 8605 (1999). 10.1063/1.478857
29. J. Cardy and S. Redner, J. Phys. A 17, L933 (1984). 10.1088/0305-4470/17/ 17/005
30. A. R. Conway and A. J. Guttmann, Phys. Rev. Lett. 77, 5284 (1996). 10.1103/PhysRevLett.77.5284
31. http://www.ms.unimelb.edu.au/iwan/saw/SAW-ser.html
32. N. Madras and G. Slade, The Self-Avoiding Walk (Birkhuser, Boston, 1996).
33. M. Doi and S. F. Edwards, The Theory of Polymer Dynamics (Oxford Science Publications, Oxford, 1986).
34. A. Bhattacharya, W. H. Morrison, K. Luo, T. Ala-Nissila, S.-C. Ying, A. Milchev, and K. Binder, Eur. Phys. J. E 10, 1140 (2009).
35. M. G. Gauthier and G. W. Slater, Eur. Phys. J. E 25, 17 (2008). 10.1140/epje/i2007-10257-5