메뉴 건너뛰기




Volumn 135, Issue 5, 2011, Pages

Numerical and theoretical study on the mechanism of biopolymer translocation process through a nano-pore

Author keywords

[No Author keywords available]

Indexed keywords

APPLIED POTENTIALS; ELECTROPHORETIC FORCE; EXTERNAL ELECTRIC FIELD; HYDRODYNAMIC INTERACTION; LANGEVIN DYNAMICS; LATTICE BOLTZMANN EQUATIONS; NUMERICAL STUDIES; POLYMER CHAINS; PORE LENGTH; QUANTITATIVE AGREEMENT; RANDOM CONFIGURATIONS; SIMULATION RESULT; THEORETICAL FORMULA; THEORETICAL STUDY; TRANS SIDE; TRANSLOCATION PROCESS; WORM-LIKE CHAIN MODELS;

EID: 80051702916     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.3622490     Document Type: Review
Times cited : (14)

References (41)
  • 2
    • 85153977982 scopus 로고    scopus 로고
    • 10.1002/1522-2683(200208)23:162583::AID-ELPS25833.0.CO;2-H
    • A. Meller and D. Branton, Electrophoresis 2, 2583 (2002). 10.1002/1522-2683(200208)23:162583::AID-ELPS25833.0.CO;2-H
    • (2002) Electrophoresis , vol.2 , pp. 2583
    • Meller, A.1    Branton, D.2
  • 4
    • 34548505259 scopus 로고    scopus 로고
    • Nanopore-based single-molecule DNA analysis
    • DOI 10.2217/17435889.2.4.459
    • K. Healy, Nanomedicine 2, 459 (2007). 10.2217/17435889.2.4.459 (Pubitemid 47370816)
    • (2007) Nanomedicine , vol.2 , Issue.4 , pp. 459-481
    • Healy, K.1
  • 9
    • 0000102029 scopus 로고    scopus 로고
    • 10.1063/1.480386
    • M. Muthukumar, J. Chem. Phys. 111, 10371 (1999). 10.1063/1.480386
    • (1999) J. Chem. Phys. , vol.111 , pp. 10371
    • Muthukumar, M.1
  • 10
    • 42749107580 scopus 로고    scopus 로고
    • 10.1103/PhysRevE.69.021806
    • Y. Kantor and M. Kardar, Phys. Rev. E 69, 021806 (2004). 10.1103/PhysRevE.69.021806
    • (2004) Phys. Rev. e , vol.69 , pp. 021806
    • Kantor, Y.1    Kardar, M.2
  • 11
    • 38949214310 scopus 로고    scopus 로고
    • Polymer translocation out of planar confinements
    • DOI 10.1088/0953-8984/20/7/075101, PII S0953898408611340
    • D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 20, 075101 (2008). 10.1088/0953-8984/20/7/075101 (Pubitemid 351229868)
    • (2008) Journal of Physics Condensed Matter , vol.20 , Issue.7 , pp. 075101
    • Panja, D.1    Barkema, G.T.2    Ball, R.C.3
  • 12
    • 41849123106 scopus 로고    scopus 로고
    • Pore-blockade times for field-driven polymer translocation
    • DOI 10.1088/0953-8984/20/9/095224, PII S0953898408644744
    • H. Vocks, D. Panja, G. T. Barkema, and R. C. Ball, J. Phys.: Condens. Matter 20, 095224 (2008). 10.1088/0953-8984/20/9/095224 (Pubitemid 351496004)
    • (2008) Journal of Physics Condensed Matter , vol.20 , Issue.9 , pp. 095224
    • Vocks, H.1    Panja, D.2    Barkema, G.T.3    Ball, R.C.4
  • 15
    • 34547889925 scopus 로고    scopus 로고
    • Langevin dynamics simulations of ds-DNA translocation through synthetic nanopores
    • DOI 10.1063/1.2746246
    • C. Forrey and M. Muthukumar, J. Chem. Phys. 127, 015102 (2007). 10.1063/1.2746246 (Pubitemid 47248494)
    • (2007) Journal of Chemical Physics , vol.127 , Issue.1 , pp. 015102
    • Forrey, C.1    Muthukumar, M.2
  • 17
    • 34547219930 scopus 로고    scopus 로고
    • Multiscale coupling of molecular dynamics and hydrodynamics: Application to DNA translocation through a nanopore
    • DOI 10.1137/060660576
    • M. Fyta, S. Melchionna, E. Kaxiras, and S. Succi, Multiscale Model. Simul. 5, 1156 (2006). 10.1137/060660576 (Pubitemid 350300982)
    • (2006) Multiscale Modeling and Simulation , vol.5 , Issue.4 , pp. 1156-1173
    • Fyta, M.G.1    Melchionna, S.2    Kaxiras, E.3    Succi, S.4
  • 24
    • 34547591762 scopus 로고    scopus 로고
    • Design of quasisymplectic propagators for Langevin dynamics
    • DOI 10.1063/1.2753496
    • S. Melchionna, J. Chem. Phys. 127, 044108 (2007). 10.1063/1.2753496 (Pubitemid 47192043)
    • (2007) Journal of Chemical Physics , vol.127 , Issue.4 , pp. 044108
    • Melchionna, S.1
  • 27
    • 61649092287 scopus 로고    scopus 로고
    • 10.1007/978-3-540-87706-6-2
    • B. Dnweg and A. J. C. Ladd, Adv. Polym. Sci. 221, 89 (2009). 10.1007/978-3-540-87706-6-2
    • (2009) Adv. Polym. Sci. , vol.221 , pp. 89
    • Dnweg, B.1    Ladd, A.J.C.2
  • 29
    • 22944485027 scopus 로고    scopus 로고
    • Lattice-Boltzmann simulations of the dynamics of polymer solutions in periodic and confined geometries
    • DOI 10.1063/1.1854151, 094902
    • O. B. Usta, A. J. C. Ladd, and J. E. Butler, J. Chem. Phys. 122, 094902 (2005). 10.1063/1.1854151 (Pubitemid 41042177)
    • (2005) Journal of Chemical Physics , vol.122 , Issue.9 , pp. 1-11
    • Usta, O.B.1    Ladd, A.J.C.2    Butler, J.E.3
  • 31
    • 0141885303 scopus 로고    scopus 로고
    • Unified description of electrophoresis and diffusion for DNA and other polyions
    • DOI 10.1021/bi035203p
    • E. Stellwagen, Y. Lu, and N. C. Stellwagen, Biochemistry 42, 11745 (2003). 10.1021/bi035203p (Pubitemid 37243635)
    • (2003) Biochemistry , vol.42 , Issue.40 , pp. 11745-11750
    • Stellwagen, E.1    Lu, Y.2    Stellwagen, N.C.3
  • 35
    • 0344252790 scopus 로고
    • 10.1063/1.1699180
    • P. E. Rouse, J. Chem. Phys. 21, 1272 (1953). 10.1063/1.1699180
    • (1953) J. Chem. Phys. , vol.21 , pp. 1272
    • Rouse, P.E.1
  • 37
    • 0017895903 scopus 로고
    • 10.1017/S0033583500002031
    • G. S. Manning, Q. Rev. Biophys. 11, 179 (1978). 10.1017/S0033583500002031
    • (1978) Q. Rev. Biophys. , vol.11 , pp. 179
    • Manning, G.S.1
  • 39
    • 33745030581 scopus 로고    scopus 로고
    • How long does it take to pull an ideal polymer into a small hole?
    • DOI 10.1103/PhysRevLett.96.228105
    • A. Y. Grosberg, S. Nechaev, M. Tamm, and O. Vasilyev, Phys. Rev. Lett. 96, 228105 (2006). 10.1103/PhysRevLett.96.228105 (Pubitemid 43877276)
    • (2006) Physical Review Letters , vol.96 , Issue.22 , pp. 228105
    • Grosberg, A.Yu.1    Nechaev, S.2    Tamm, M.3    Vasilyev, O.4
  • 41
    • 36849141559 scopus 로고
    • 10.1063/1.1742462
    • B. H. Zimm, J. Chem. Phys. 24, 269 (1956). 10.1063/1.1742462
    • (1956) J. Chem. Phys. , vol.24 , pp. 269
    • Zimm, B.H.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.