Translocation of a heterogeneous polymer

Journal of Chemical Physics

Volumn 137, Issue 6, 2012, Pages

  Mirigian, Stephen ^a   Wang, Yanbo ^a   Muthukumar, Murugappan ^a  

^a UNIVERSITY OF MASSACHUSETTS   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYTICAL EXPRESSIONS; CHARGE FRACTIONS; FRICTIONAL INTERACTIONS; HETEROGENEOUS POLYMERS; LANGEVIN DYNAMICS; MEAN FIRST PASSAGE TIME; OPTIMUM LENGTH; QUANTITATIVE AGREEMENT; TOTAL CHARGE;

BLOCK COPOLYMERS; ELECTRIC FIELDS; SUGAR INDUSTRY;

PROBABILITY DISTRIBUTIONS;

PLASTIC; POLYMER;

ARTICLE; CHEMISTRY; COMPUTER SIMULATION; DIFFUSION; ELASTICITY; KINETICS; NANOPORE; PROBABILITY;

COMPUTER SIMULATION; DIFFUSION; ELASTICITY; KINETICS; NANOPORES; PLASTICS; POLYMERS; PROBABILITY;

EID: 84865176409     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.4742970     Document Type: Article

References (63)

1. J. J. Kasianowicz, E. Brandin, D. Branton, and D. W. Deamer, Proc. Natl. Acad. Sci. U.S.A. 93, 13770 (1996). 10.1073/pnas.93.24.13770 (Pubitemid 26424195)
2. S. M. Bezrukov, I. Vodyanoy, R. A. Brutyan, and J. J. Kasianowicz, Macromolecules 26, 8517 (1996). 10.1021/ma960841j
3. A. Meller, L. Nivon, E. Brandin, J. Golovchenko, and D. Branton, Proc. Natl. Acad. Sci. U.S.A. 97, 1079 (2000). 10.1073/pnas.97.3.1079 (Pubitemid 30080815)
4. M. Akeson, D. Branton, J. J. Kasianowicz, E. Brandin, and D. W. Deamer, Biophys. J. 77, 3227 (1999). 10.1016/S0006-3495(99)77153-5
5. A. Meller, J. Phys.: Condens. Matter 15, R581 (2003). 10.1088/0953-8984/15/17/202
6. H. Wang, J. E. Dunning, A. P. Huang, J. A. Nyamwanda, and D. Branton, Proc. Natl. Acad. Sci. U.S.A. 101, 13472 (2004). 10.1073/pnas.0405568101 (Pubitemid 39238427)
7. T. Z. Butler, J. H. Gundlach, and M. A. Troll, Biophys. J. 90, 190 (2006). 10.1529/biophysj.105.068957
8. C. T. A. Wong and M. Muthukumar, J. Chem. Phys. 128, 154903 (2008). 10.1063/1.2897932 (Pubitemid 351574691)
9. C. T. A. Wong and M. Muthukumar, J. Chem. Phys. 133, 045101 (2010). 10.1063/1.3464333
10. J. Li, M. Gershow, D. Stein, E. Brandin, and J. A. Golovchenko, Nature Mater. 2, 611 (2003). 10.1038/nmat965
11. P. Chen, J. Gu, E. Brandin, Y.-R. Kim, Q. Wang, and D. Branton, Nanoletters 4, 2293 (2004). 10.1021/nl048654j
12. D. Fologea, J. Uplinger, B. Thomas, D. S. McNabb, and J. Li, Nanoletters 5, 1734 (2005). 10.1021/nl051063o (Pubitemid 41396156)
13. D. Fologea, M. Gershow, B. Ledden, D. S. McNabb, J. A. Golovchenko, and J. Li, Nanoletters 5, 1905 (2005). 10.1021/nl051199m (Pubitemid 41548439)
14. A. J. Storm, C. Storm, J. Chen, H. Zandbergen, J.-F. Joanny, and C. Dekker, Nanoletters 5, 1193 (2005). 10.1021/nl048030d (Pubitemid 41084390)
15. A. J. Storm, J. Chen, H. Zandbergen, and C. Dekker, Phys. Rev. E 71, 051903 (2005). 10.1103/PhysRevE.71.051903 (Pubitemid 41480966)
16. R. F. Purnell, K. K. Mehta, and J. J. Schmidt, Nanoletters 8, 3029 (2008). 10.1021/nl802312f
17. A. Oukhaled, B. Cressiot, L. Bacri, M. Pastoriza-Gallego, J.-M. Betton, E. Bourhis, R. Jede, J. Gierak, L. Auvray, and J. Pelta, ACS Nano 5, 3628 (2011). 10.1021/nn1034795
18. A. Wolfe, M. Mohammad, S. Cheley, H. Bayley, and L. Movileanu, J. Am. Chem. Soc. 129, 14034 (2007). 10.1021/ja0749340 (Pubitemid 350106096)
19. S. L. Cockroft, J. Chu, M. Amorin, and M. R. Ghadiri, J. Am. Chem. Soc. 130, 818 (2008). 10.1021/ja077082c
20. J. Mathe, A. Aksimentiev, D. R. Nelson, K. Schulten, and A. Meller, Proc. Natl. Acad. Sci. U.S.A. 102, 12377 (2005). 10.1073/pnas.0502947102 (Pubitemid 41266367)
21. R. M. M. Smeets, U. F. Keyser, D. Krapf, M.-Y. Wu, N. H. Dekker, and C. Dekker, Nanoletters 6, 89 (2006). 10.1021/nl052107w (Pubitemid 43166107)
22. S. W. Kowalczyk, D. B. Wells, A. Aksimentiev, and C. Dekker, Nanoletters 12, 1038 (2012). 10.1021/nl204273h
23. M. Misakian and J. Kasianowicz, J. Membr. Biol. 195, 137 (2003). 10.1007/s00232-003-0615-1 (Pubitemid 37338956)
24. M. Muthukumar, Polymer Translocation (CRC, 2011).
25. W. Sung and P. Park, Phys. Rev. Lett. 77, 783 (1996). 10.1103/PhysRevLett.77.783
26. E. DiMarzio and A. Mandell, J. Chem. Phys. 107, 5510 (1997). 10.1063/1.474256
27. M. Muthukumar, J. Chem. Phys. 111, 10371 (1999). 10.1063/1.480386
28. D. K. Lubensky and D. R. Nelson, Biophys. J. 77, 1824 (1999). 10.1016/S0006-3495(99)77027-X
29. D. Panja, G. Barkema, and R. Ball, J. Phys.: Condens. Matter 19, 432202 (2007). 10.1088/0953-8984/19/43/432202 (Pubitemid 47574744)
30. T. Sakaue, Phys. Rev. E 76, 021803 (2007). 10.1103/PhysRevE.76.021803 (Pubitemid 47357998)
31. M. Muthukumar, J. Chem. Phys. 118, 5174 (2003). 10.1063/1.1553753
32. T. Ambjörnsson, S. Apell, Z. Konkoli, E. Di Marzio, and J. Kasianowicz, J. Chem. Phys. 117, 4063 (2002). 10.1063/1.1486208 (Pubitemid 34992690)
33. M. Slutsky, M. Kardar, and L. A. Mirny, Phys. Rev. E 69, 061903 (2004). 10.1103/PhysRevE.69.061903
34. A. Milchev, K. Binder, and A. Bhattacharya, J. Chem. Phys. 121, 6042 (2004). 10.1063/1.1785776
35. M. Muthukumar, Electrophoresis 23, 1417 (2002). 10.1002/1522-2683(200205) 23:101417::AID-ELPS1417>3.0.CO;2-O
36. A. Mohan, A. B. Kolomeisky, and M. Pasquali, J. Chem. Phys. 128, 125104 (2008). 10.1063/1.2868777 (Pubitemid 351474133)
37. Y. Kafri, D. K. Lubensky, and D. R. Nelson, Biophys. J. 86, 3373 (2004). 10.1529/biophysj.103.036152 (Pubitemid 38780224)
38. K. Luo, T. Ala-Nissila, S.-C. Ying, and A. Bhattacharya, Phys. Rev. Lett. 100, 058101 (2008). 10.1103/PhysRevLett.100.058101 (Pubitemid 351220690)
39. M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 065103 (2008). 10.1063/1.2826339 (Pubitemid 351264601)
40. M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 205103 (2008). 10.1063/1.2927878 (Pubitemid 351770649)
41. M. G. Gauthier and G. W. Slater, J. Chem. Phys. 128, 175103 (2008). 10.1063/1.2912069 (Pubitemid 351644912)
42. U. F. Keyser, J. R. Soc., Interface 8, 1369 (2011). 10.1098/rsif.2011. 0222
43. M. Wanunu and A. Meller, Nanoletters 7, 1580 (2007). 10.1021/nl070462b (Pubitemid 47140429)
44. S. M. Iqbal, D. Akin, and R. Bashir, Nat. Nanotechnol. 2, 243 (2007). 10.1038/nnano.2007.78 (Pubitemid 46739815)
45. J. J. Kasianowicz, J. W. Robertson, E. R. Chan, J. E. Reiner, and V. M. Stanford, Annu. Rev. Anal. Chem. 1, 737 (2008). 10.1146/annurev.anchem.1.031207. 112818
46. J. Sanchez-Quesada, A. Saghatelian, S. Cheley, H. Bayley, and M. R. Ghadiri, Angew. Chem. 43, 3063 (2004). 10.1002/anie.200453907 (Pubitemid 39257634)
47. O. K. Dudko, J. Mathe, A. Szabo, A. Meller, and G. Hummer, Biophys. J. 92, 4188 (2007). 10.1529/biophysj.106.102855 (Pubitemid 46910535)
48. J. Mathe, H. Visram, V. Viasnoff, Y. Rabin, and A. Meller, Biophys. J. 87, 3205 (2004). 10.1529/biophysj.104.047274 (Pubitemid 40468577)
49. M. Muthukumar, Phys. Rev. Lett. 86, 3188 (2001). 10.1103/PhysRevLett.86. 3188 (Pubitemid 32325517)
50. C. Y. Kong and M. Muthukumar, Electrophoresis 23, 2697 (2002). 10.1002/1522-2683(200208)23:162697::AID-ELPS2697>3.0.CO;2-M
51. S. Plimpton, J. Comput. Phys. 117, 1 (1995), see http://lammps.sandia. gov. 10.1006/jcph.1995.1039
52. M. Allen and D. Tildesley, Computer Simulation of Liquids (Oxford University Press, 1987).
53. W. C. Swope, H. C. Andersen, P. H. Berens, and K. R. Wilson, J. Chem. Phys. 76, 637 (1982). 10.1063/1.442716
54. M. Muthukumar and C. Kong, Proc. Natl. Acad. Sci. U.S.A. 103, 5273 (2006). 10.1073/pnas.0510725103
55. E. Eisenriegler, Polymers Near Surfaces (World Scientific, 1993).
56. C. W. Gardiner, Handbook of Stochastic Methods (Springer-Verlag, 1983).
57. S. E. Henrickson, M. Misakian, B. Robertson, and J. J. Kasianowicz, Phys. Rev. Lett. 85, 3057 (2000). 10.1103/PhysRevLett.85.3057
58. K. Luo, T. Ala-Nissila, S. C. Yang, and R. Metzler, Europhys. Lett. 88, 68006 (2009). 10.1209/0295-5075/88/68006
59. M. G. Gauthier and G. W. Slater, Phys. Rev. E. 79, 021802 (2009). 10.1103/PhysRevE.79.021802
60. H. W. deHaan and G. W. Slater, Phys. Rev. E. 81, 051802 (2010). 10.1103/PhysRevE.81.051802
61. H. W. deHaan and G. W. Slater, J. Chem. Phys. 136, 154903 (2012). 10.1063/1.3699979
62. C. M. Edmonds, Y. C. Hudiono, A. G. Ahmadi, P. J. Hesketh, and S. Nair, J. Chem. Phys. 136, 065105 (2012). 10.1063/1.3682777
63. T. Ikonen, A. Bhattacharya, T. Ala-Nissila, and W. Sung, Phys. Rev. E. 85, 051803 (2012). 10.1103/PhysRevE.85.051803