Two novel parvoviruses in frugivorous new and old world bats

PLoS ONE

Volumn 6, Issue 12, 2011, Pages

  Canuti, Marta ^a   Eis Huebinger, Anna Maria ^b   Deijs, Martin ^a   de Vries, Michel ^a   Drexler, Jan Felix ^b   Oppong, Samuel K ^c   Müller, Marcel A ^b   Klose, Stefan M ^b,d   Wellinghausen, Nele ^e   Cottontail, Veronika M ^d   Kalko, Elisabeth K V ^d,f   Drosten, Christian ^b   van der Hoek, Lia ^a  

^a UNIVERSITY OF AMSTERDAM   (Netherlands)

^b UNIVERSITY OF BONN   (Germany)

^c KWAME NKRUMAH UNIVERSITY OF SCIENCE AND TECHNOLOGY   (Ghana)

^d UNIVERSITY OF ULM   (Germany)

^e Gaertner and Collegues Laboratory   (Germany)

^f SMITHSONIAN TROPICAL RESEARCH INSTITUTE   (Panama)

Author keywords

[No Author keywords available]

Indexed keywords

AFRICA; ANIMAL TISSUE; ARTIBEUS JAMAICENSIS; ARTIBEUS LITURATUS; ARTICLE; BAT; BLOOD SAMPLING; BRAIN; CENTRAL AMERICA; CONTROLLED STUDY; EIDOLON HELVUM; FRUGIVORE; GENOME ANALYSIS; GEOGRAPHIC ORIGIN; GHANA; HIGH THROUGHPUT SEQUENCING; INTESTINE; KIDNEY; LIVER; LUNG; MOLECULAR PHYLOGENY; NEW GENUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PANAMA; PARVOVIRUS; PHYLLOSTOMIDAE; PTEROPODIDAE; SEQUENCE ANALYSIS; SPECIES DISTRIBUTION; SPLEEN; TISSUE DISTRIBUTION; UNINDEXED SEQUENCE; VIRUS DETECTION; VIRUS GENOME; VIRUS IDENTIFICATION; VIRUS REPLICATION; ANIMAL; CLASSIFICATION; ISOLATION AND PURIFICATION; PHYLOGENY; SPECIES DIFFERENCE; VIROLOGY;

PRIMER DNA;

ANIMALS; BASE SEQUENCE; CHIROPTERA; DNA PRIMERS; PARVOVIRUS; PHYLOGENY; SPECIES SPECIFICITY;

EID: 84455161943     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0029140     Document Type: Article

References (52)

1. Schipper J, Chanson JS, Chiozza F, Cox NA, Hoffmann M, et al. (2008) The status of the world's land and marine mammals: diversity, threat, and knowledge. Science 322: 225-230.
2. Calisher CH, Childs JE, Field HE, Holmes KV, Schountz T, (2006) Bats: important reservoir hosts of emerging viruses. Clin Microbiol Rev 19: 531-545.
3. Moore PR, Jansen CC, Graham GC, Smith IL, Craig SB, (2010) Emerging tropical diseases in Australia. Part 3. Australian bat lyssavirus. Ann Trop Med Parasitol 104: 613-621.
4. Epstein JH, Field HE, Luby S, Pulliam JR, Daszak P, (2006) Nipah virus: impact, origins, and causes of emergence. Curr Infect Dis Rep 8: 59-65.
5. Halpin K, Young PL, Field HE, Mackenzie JS, (2000) Isolation of Hendra virus from pteropid bats: a natural reservoir of Hendra virus. J Gen Virol 81: 1927-1932.
6. Li W, Shi Z, Yu M, Ren W, Smith C, et al. (2005) Bats are natural reservoirs of SARS-like coronaviruses. Science 310: 676-679.
7. Leroy EM, Kumulungui B, Pourrut X, Rouquet P, Hassanin A, et al. (2005) Fruit bats as reservoirs of Ebola virus. Nature 438: 575-576.
8. Towner JS, Pourrut X, Albarino CG, Nkogue CN, Bird BH, et al. (2007) Marburg virus infection detected in a common African bat. PLoS One 2 (8): e764.
9. Zhu HC, Chu DK, Liu W, Dong BQ, Zhang SY, et al. (2009) Detection of diverse astroviruses from bats in China. J Gen Virol 90: 883-887.
10. Pfefferle S, Oppong S, Drexler JF, Gloza-Rausch F, Ipsen A, et al. (2009) Distant relatives of severe acute respiratory syndrome coronavirus and close relatives of human coronavirus 229E in bats, Ghana. Emerg Infect Dis 15: 1377-1384.
11. Lau SK, Woo PC, Wong BH, Wong AY, Tsoi HW, et al. (2010) Identification and complete genome analysis of three novel paramyxoviruses, Tuhoko virus 1, 2 and 3, in fruit bats from China. Virology 404: 106-116.
12. Li L, Victoria JG, Wang C, Jones M, Fellers GM, et al. (2010) Bat guano virome: predominance of dietary viruses from insects and plants plus novel mammalian viruses. J Virol 84: 6955-6965.
13. Misra V, Dumonceaux T, Dubois J, Willis C, Nadin-Davis S, et al. (2009) Detection of polyoma and corona viruses in bats of Canada. J Gen Virol 90: 2015-2022.
14. Li Y, Ge X, Zhang H, Zhou P, Zhu Y, et al. (2010) Host range, prevalence, and genetic diversity of adenoviruses in bats. J Virol 84: 3889-3897.
15. Wibbelt G, Kurth A, Yasmum N, Bannert M, Nagel S, et al. (2007) Discovery of herpesviruses in bats. J Gen Virol 88: 2651-2655.
16. Li Y, Ge X, Hon CC, Zhang H, Zhou P, et al. (2010) Prevalence and Genetic Diversity of Adeno-Associated Viruses in Bats, China. J Gen Virol 91: 2601-2609.
17. Jones MS, Kapoor A, Lukashov VV, Simmonds P, Hecht F, et al. (2005) New DNA viruses identified in patients with acute viral infection syndrome. J Virol 79: 8230-8236.
18. Lau SK, Woo PC, Tse H, Fu CT, Au WK, et al. (2008) Identification of novel porcine and bovine parvoviruses closely related to human parvovirus 4. J Gen Virol 89: 1840-1848.
19. Szelei J, Liu K, Li Y, Fernandes S, Tijssen P, (2010) Parvovirus 4-like virus in blood products. Emerg Infect Dis 16: 561-564.
20. Sharp CP, LeBreton M, Kantola K, Nana A, Diffo JL, et al. (2010) Widespread Infection with Homologues of Human Parvoviruses B19, PARV4, and Human Bocavirus of Chimpanzees and Gorillas in the Wild. J Virol 84: 10289-10296.
21. Anderson MJ, Higgins PG, Davis LR, Willman JS, Jones SE, et al. (1985) Experimental Parvoviral Infection in Humans. J Infect Dis 152: 257-265.
22. de Vries M, Deijs M, Canuti M, van Schaik BD, Faria NR, et al. (2011) A sensitive assay for virus discovery in respiratory clinical samples. PLoS One 6 (1): e16118.
23. Cottontail VM, Wellinghausen N, Kalko EKV, (2009) Habitat fragmentation and haemoparasites in the common fruit bat, Artibeus jamaicensis (Phyllostomidae) in a tropical lowland forest in Panama. Parasitology 136: 1133-1145.
24. Klose SM, Smith CL, Denzel AJ, Kalko EK, (2006) Reproduction elevates the corticosterone stress response in common fruit bats. J Comp Physiol A Neuroethol Sens Neural Behav Physiol 192: 341-350.
25. Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ, (1990) Basic local alignment search tool. J Mol Biol 215: 403-410.
26. Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, et al. (2007) Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948.
27. Hall TA, (1999) BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symposium Ser 41: 95-98.
28. Tamura K, Nei M, Kumar S, (2004) Prospects for inferring very large phylogenies by using the neighbor-joining method. Proc Natl Acad Sci U S A 101: 11030-11035.
29. Zuckerkandl E, Pauling L, (1965) Evolutionary divergence and convergence in proteins. In: Bryson V, Vogel HJ, editors. Evolving Genes and Proteins Academic Press New York pp. 97-166.
30. Tamura K, Dudley J, Nei M, Kumar S, (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0. Mol Biol Evol 24: 1596-1599.
31. Saitou N, Nei M, (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4: 406-425.
32. Felsenstein J, (1985) Confidence-Limits on Phylogenies- An Approach Using the Bootstrap. Evolution 39: 783-791.
33. Salminen MO, Carr JK, Burke DS, McCutchan FE, (1995) Identification of Breakpoints in Intergenotypic Recombinants of Hiv Type-1 by Bootscanning. Aids Res Hum Retroviruses 11: 1423-1425.
34. Kimura M, (1980) A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J Mol Evol 16: 111-120.
35. Lole KS, Bollinger RC, Paranjape RS, Gadkari D, Kulkarni SS, et al. (1999) Full-length human immunodeficiency virus type 1 genomes from subtype C-infected seroconverters in India, with evidence of intersubtype recombination. J Virol 73: 152-160.
36. van der Hoek L, Pyrc K, Jebbink MF, Vermeulen-Oost W, Berkhout RJ, et al. (2004) Identification of a new human coronavirus. Nat Med 10: 368-373.
37. Breed AC, Field HE, Smith CS, Edmonston J, Meers J, (2010) Bats Without Borders: Long-Distance Movements and Implications for Disease Risk Management. Ecohealth 7: 204-211.
38. Jakava-Viljanen M, Lilley T, Kyheroinen EM, Huovilainen A, (2010) First encounter of European bat lyssavirus type 2 (EBLV-2) in a bat in Finland. Epidemiol Infect 138: 1581-15855.
39. Wong S, Lau S, Woo P, Yuen KY, (2007) Bats as a continuing source of emerging infections in humans. Rev Med Virol 17: 67-91.
40. Shackelton LA, Parrish CR, Truyen U, Holmes EC, (2005) High rate of viral evolution associated with the emergence of carnivore parvovirus. Proc Natl Acad Sci U S A 102: 379-384.
41. Turmelle AS, Olival KJ, (2009) Correlates of viral richness in bats (order Chiroptera). Ecohealth 6: 522-539.
42. Norja P, Eis-Hubinger AM, Soderlund-Venermo M, Hedman K, Simmonds P, (2008) Rapid sequence change and geographical spread of human parvovirus B19: Comparison of B19 virus evolution in acute and persistent infections. J Virol 82: 6427-6433.
43. Shackelton LA, Hoelzer K, Parrish CR, Holmes EC, (2007) Comparative analysis reveals frequent recombination in the parvoviruses. J Gen Virol 88: 3294-3301.
44. Lukashov VV, Goudsmit J, (2001) Evolutionary relationships among parvoviruses: Virus-host coevolution among autonomous primate parvoviruses and links between adeno-associated and avian parvoviruses. J Virol 75: 2729-2740.
45. Teeling EC, Springer MS, Madsen O, Bates P, O'brien SJ, et al. (2005) A molecular phylogeny for bats illuminates biogeography and the fossil record. Science 307: 580-584.
46. Richter HV, Cumming GS, (2008) First application of satellite telemetry to track African straw-coloured fruit bat migration. J Zool 275: 172-176.
47. Mickleburgh S, Waylen K, Racey P, (2009) Bats as bushmeat: a global review. Fauna & Flora International, Oryx 43: 217-234.
48. Asibey EOA, (1974) Wildlife as a source of protein in Africa South of the Sahara. Biol Conserv 6: 32-39.
49. Giannini NP, Kalko EKV, (2004) Trophic structure in a large assemblage of phyllostomid bats in Panama. Oikos 105: 209-220.
50. Handley, Charles O, Wilson, Don E, Gardner, et al. (1991) Demography and natural history of the common fruit bat, Artibeus jamaicensis, on Barro Colorado Island, Panamá Washington, D.C Smithsonian Institution Press.
51. Meyer CFJ, Fründ J, Pineda Lizano W, Kalko EKV, (2008) Ecological correlates of vulnerability to fragmentation in Neotropical bats. J Appl Ecol 45: 381-391.
52. Drummond AJ, Ashton B, Buxton S, Cheung M, Cooper A, et al. (2010) Geneious v5.1.