Structural significance of hypermodified nucleic acid base hydroxywybutine (OHyW) which occur at 37th position in the anticodon loop of yeast tRNA Phe

Journal of Molecular Graphics and Modelling

Volumn 38, Issue , 2012, Pages 174-185

  Kumbhar, Navanath M ^a   Kumbhar, Bajarang V ^a   Sonawane, Kailas D ^a  

^a SHIVAJI UNIVERSITY   (India)

Author keywords

Hydroxywybutine; Hypermodified nucleoside; Molecular dynamics (MD) simulation; PM3; Transfer RNA

Indexed keywords

AB INITIO; ANTICODON LOOP; B3LYP/6-31G; BASIS SETS; CONFORMATIONAL PREFERENCES; CONFORMATIONAL STUDY; FORCE FIELDS; GEOMETRY OPTIMIZATION; HYDROXYL GROUPS; HYDROXYWYBUTINE; HYPERMODIFIED NUCLEOSIDE; IMIDAZOLE MOIETY; INTRAMOLECULAR HYDROGEN BONDING; INTRAMOLECULAR INTERACTIONS; MD SIMULATION; MOLECULAR DYNAMICS SIMULATIONS; MOLECULAR ELECTROSTATIC POTENTIALS; PM3; PM3 METHOD; PROTEIN BIOSYNTHESIS; QUANTUM CHEMICAL; SALIENT FEATURES; SEMI-EMPIRICAL; SIDE-CHAINS; SINGLE POINT; SOLVENT ACCESSIBLE SURFACE AREAS; STABLE STRUCTURES; WATSON-CRICK BASE PAIRING;

BIOCHEMISTRY; HYDROGEN BONDS; MOLECULAR DYNAMICS; QUANTUM CHEMISTRY; RNA;

CONFORMATIONS;

HYDROGEN; HYDROXYWYBUTINE; IMIDAZOLE; NUCLEIC ACID BASE; SOLVENT; TRANSFER RNA; UNCLASSIFIED DRUG; WYBUTINE;

AB INITIO CALCULATION; ANALYTIC METHOD; ANTICODON; ARTICLE; BASE PAIRING; DENSITY FUNCTIONAL THEORY; GEOMETRY; HYDROGEN BOND; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MOLECULAR MECHANICS; PRIORITY JOURNAL; PROTEIN CONFORMATION; PROTEIN MODIFICATION; PROTEIN STRUCTURE; QUANTUM YIELD; SIMULATION; YEAST;

ANTICODON; BASE PAIRING; GUANINE; HYDROGEN BONDING; KINETICS; MOLECULAR DYNAMICS SIMULATION; NUCLEIC ACID CONFORMATION; PHENYLALANINE; PROTEIN BIOSYNTHESIS; QUANTUM THEORY; RNA, TRANSFER, PHE; SACCHAROMYCES CEREVISIAE; STATIC ELECTRICITY; THERMODYNAMICS;

EID: 84867415005     PISSN: 10933263     EISSN: 18734243     Source Type: Journal    
DOI: 10.1016/j.jmgm.2012.07.005     Document Type: Article

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