메뉴 건너뛰기




Volumn 61, Issue 3, 2011, Pages 507-521

Conformational Preferences of Modified Nucleoside N2-methylguanosine (m2G) and Its Derivative N2, N2-dimethylguanosine (m 2 2 G) Occur at 26th Position (Hinge Region) in tRNA

Author keywords

m22G; m2G; Modified nucleosides; PCILO; Transfer RNA

Indexed keywords

7 METHYLGUANOSINE; 7-METHYLGUANOSINE; DRUG DERIVATIVE; GUANOSINE; N(2),N(2) DIMETHYLGUANOSINE; N(2),N(2)-DIMETHYLGUANOSINE; TRANSFER RNA;

EID: 81155150266     PISSN: 10859195     EISSN: None     Source Type: Journal    
DOI: 10.1007/s12013-011-9233-1     Document Type: Article
Times cited : (20)

References (57)
  • 1
    • 0343647472 scopus 로고
    • Additional components in ribonucleic acid of rat-liver fractions
    • Dunn, D. B. (1959). Additional components in ribonucleic acid of rat-liver fractions. Biochimica et Biophysica Acta, 34, 286-288.
    • (1959) Biochimica Et Biophysica Acta , vol.34 , pp. 286-288
    • Dunn, D.B.1
  • 2
    • 25144499284 scopus 로고
    • The occurrence of methylated guanines in ribonucleic acids from several sources
    • Smith, J. D., & Dunn, D. B. (1959). The occurrence of methylated guanines in ribonucleic acids from several sources. The Biochemical Journal, 72, 294-301.
    • (1959) The Biochemical Journal , vol.72 , pp. 294-301
    • Smith, J.D.1    Dunn, D.B.2
  • 3
    • 0022336199 scopus 로고
    • Hypermodified nucleosides of tRNA: Synthesis, chemistry, and structural features of biological interest
    • Adamiak, R. W., & Gornicki, P. (1985). Hypermodified nucleosides of tRNA: Synthesis, chemistry, and structural features of biological interest. Progress in Nucleic Acid Research and Molecular Biology, 32, 27-74.
    • (1985) Progress in Nucleic Acid Research and Molecular Biology , vol.32 , pp. 27-74
    • Adamiak, R.W.1    Gornicki, P.2
  • 4
    • 0030750024 scopus 로고    scopus 로고
    • Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate: tRNA delta2-isopentenyl transferase: Dependence on the anticodon arm structure
    • Motorin, Y., Bec, G., Tewari, R., & Grosjean, H. (1997). Transfer RNA recognition by the Escherichia coli delta2-isopentenyl-pyrophosphate: tRNA delta2-isopentenyl transferase: Dependence on the anticodon arm structure. RNA, 3, 721-733.
    • (1997) Rna , vol.3 , pp. 721-733
    • Motorin, Y.1    Bec, G.2    Tewari, R.3    Grosjean, H.4
  • 7
    • 0027245490 scopus 로고
    • Modification of tRNA as a regulatory device
    • Persson, B. C. (1993). Modification of tRNA as a regulatory device. Molecular Microbiology, 8, 1011-1016.
    • (1993) Molecular Microbiology , vol.8 , pp. 1011-1016
    • Persson, B.C.1
  • 9
    • 33846269602 scopus 로고    scopus 로고
    • tRNA's wobble decoding of the genome: 40 years of modification
    • Agris, P. F., Vendeix, F. A. P., & Graham, W. D. (2007). tRNA's wobble decoding of the genome: 40 years of modification. Journal of Molecular Biology, 366, 1-13.
    • (2007) Journal of Molecular Biology , vol.366 , pp. 1-13
    • Agris, P.F.1    Vendeix, F.A.P.2    Graham, W.D.3
  • 10
    • 0003796783 scopus 로고    scopus 로고
    • Transfer RNA modification, in Escherichia coli and Salmonella
    • R. CurtissIII, A. Bock, J. L. Ingrahan, J. B. Kaper, S. Maloy, and F. C. Neidhardt (Eds.), Washington, DC: ASM
    • Bjork, G. R., & Hagervall, T. G. (2005). Transfer RNA modification, in Escherichia coli and Salmonella. In R. Curtiss III, A. Bock, J. L. Ingrahan, J. B. Kaper, S. Maloy, & F. C. Neidhardt (Eds.), Cellular and molecular biology. Washington, DC: ASM.
    • (2005) Cellular and Molecular Biology
    • Bjork, G.R.1    Hagervall, T.G.2
  • 11
    • 33750998821 scopus 로고    scopus 로고
    • The early history of tRNA recognition by aminoacyl-tRNA synthetases
    • Giege, R. (2006). The early history of tRNA recognition by aminoacyl-tRNA synthetases. Journal of Biosciences, 31, 477-488.
    • (2006) Journal of Biosciences , vol.31 , pp. 477-488
    • Giege, R.1
  • 12
    • 0029400768 scopus 로고
    • 2-dimethylguanosine presence and alternate tRNA conformers
    • 2-dimethylguanosine presence and alternate tRNA conformers. RNA, 1, 886-891.
    • (1995) Rna , vol.1 , pp. 886-891
    • Steinberg, S.1    Cedergren, R.2
  • 14
    • 0028943560 scopus 로고
    • Posttranscriptionally modified nucleosides in transfer RNA: Their locations and frequencies
    • Grosjean, H., Sprinzl, M., & Steinberg, S. (1995). Posttranscriptionally modified nucleosides in transfer RNA: Their locations and frequencies. Biochimie, 77, 139-141.
    • (1995) Biochimie , vol.77 , pp. 139-141
    • Grosjean, H.1    Sprinzl, M.2    Steinberg, S.3
  • 15
    • 13444288185 scopus 로고    scopus 로고
    • Compilation of tRNA sequences and sequences of tRNA genes
    • Sprinzl, M., & Vassilenko, K. S. (2005). Compilation of tRNA sequences and sequences of tRNA genes. Nucleic Acids Research, 33, 139-140.
    • (2005) Nucleic Acids Research , vol.33 , pp. 139-140
    • Sprinzl, M.1    Vassilenko, K.S.2
  • 17
    • 81155143292 scopus 로고    scopus 로고
    • H. Grosjean and R. Benne (Eds.), Washington, DC: ASM
    • Auffinger, P., & Westhof, E. (1998). In H. Grosjean & R. Benne (Eds.), Editing modification of RNA (pp. 569-576). Washington, DC: ASM.
    • (1998) Editing Modification of RNA , pp. 569-576
    • Auffinger, P.1    Westhof, E.2
  • 18
    • 0028272470 scopus 로고
    • The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles
    • Kowalak, J. A., Dalluge, J. J., McCloskey, J. A., & Stetter, K. O. (1994). The role of posttranscriptional modification in stabilization of transfer RNA from hyperthermophiles. Biochemistry, 33, 7869-7876.
    • (1994) Biochemistry , vol.33 , pp. 7869-7876
    • Kowalak, J.A.1    Dalluge, J.J.2    McCloskey, J.A.3    Stetter, K.O.4
  • 22
    • 0002841715 scopus 로고    scopus 로고
    • Biophysical and conformational properties of modified nucleosides in RNA (nuclear magnetic resonance studies)
    • H. Grosjean and R. Benne (Eds.), Washington, DC: ASM
    • Davis, D. R. (1998). Biophysical and conformational properties of modified nucleosides in RNA (nuclear magnetic resonance studies). In H. Grosjean & R. Benne (Eds.), Modification and editing of RNA (pp. 85-102). Washington, DC: ASM.
    • (1998) Modification and Editing of RNA , pp. 85-102
    • Davis, D.R.1
  • 24
    • 0028988341 scopus 로고
    • 2 dimethylguanosine in eukaryotic tRNA: Importance of the tRNA architecture
    • 2 dimethylguanosine in eukaryotic tRNA: Importance of the tRNA architecture. Biochimie, 77, 54-61.
    • (1995) Biochimie , vol.77 , pp. 54-61
    • Edqvist, J.1    Straby, K.B.2    Grosjean, H.3
  • 25
    • 0027935988 scopus 로고
    • Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme
    • Edqvist, J., Blomqvist, K., & Straby, K. B. (1994). Structural elements in yeast tRNAs required for homologous modification of guanosine-26 into dimethylguanosine-26 by the yeast Trm1 tRNA-modifying enzyme. Biochemistry, 33, 9546-9551.
    • (1994) Biochemistry , vol.33 , pp. 9546-9551
    • Edqvist, J.1    Blomqvist, K.2    Straby, K.B.3
  • 26
    • 0019317307 scopus 로고
    • Sequential folding of transfer RNA: A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5′ end
    • Boyle, J., Robillard, G. T., & Kim, S. H. (1980). Sequential folding of transfer RNA: A nuclear magnetic resonance study of successively longer tRNA fragments with a common 5′ end. Journal of Molecular Biology, 139, 601-625.
    • (1980) Journal of Molecular Biology , vol.139 , pp. 601-625
    • Boyle, J.1    Robillard, G.T.2    Kim, S.H.3
  • 30
    • 81155143290 scopus 로고    scopus 로고
    • Peptoids with aliphatic side chains as helical structures without hydrogen bonds and collagen/inverse-collagen type structures
    • Nandel, F. S., & Saini, A. (2011). Peptoids with aliphatic side chains as helical structures without hydrogen bonds and collagen/inverse-collagen type structures. Journal of Biophysical Chemistry, 2, 37-48.
    • (2011) Journal of Biophysical Chemistry , vol.2 , pp. 37-48
    • Nandel, F.S.1    Saini, A.2
  • 33
    • 0036909140 scopus 로고    scopus 로고
    • Conformational preferences of the base substituent in hypermodified nucleotide queuosine 5′-monophosphate 'pQ' and protonated variant 'pQH+
    • Sonavane, U. B., Sonawane, K. D., & Tewari, R. (2002). Conformational preferences of the base substituent in hypermodified nucleotide queuosine 5′-monophosphate 'pQ' and protonated variant 'pQH+'. Journal of Biomolecular Structure and Dynamics, 20, 473-485.
    • (2002) Journal of Biomolecular Structure and Dynamics , vol.20 , pp. 473-485
    • Sonavane, U.B.1    Sonawane, K.D.2    Tewari, R.3
  • 35
    • 0025605908 scopus 로고
    • 6-(N-threonylcarbonyl) adenine by quantum chemical PCILO calculations
    • 6-(N-threonylcarbonyl) adenine by quantum chemical PCILO calculations. Journal of Biomolecular Structure and Dynamics, 8, 675-686.
    • (1990) Journal of Biomolecular Structure and Dynamics , vol.8 , pp. 675-686
    • Tewari, R.1
  • 37
  • 38
    • 84990642436 scopus 로고
    • 2-isopentenyl) adenine by the quantum chemical PCILO calculations
    • 2-isopentenyl) adenine by the quantum chemical PCILO calculations. International Journal of Quantum Chemistry, 34, 133-142.
    • (1988) International Journal of Quantum Chemistry , vol.34 , pp. 133-142
    • Tewari, R.1
  • 39
    • 84987142388 scopus 로고
    • Conformational preferences of 6-furfuryl amino purine and 6-benzyl amino purine
    • Tewari, R. (1992). Conformational preferences of 6-furfuryl amino purine and 6-benzyl amino purine. International Journal of Quantum Chemistry, 41, 709-718.
    • (1992) International Journal of Quantum Chemistry , vol.41 , pp. 709-718
    • Tewari, R.1
  • 40
    • 2042502122 scopus 로고    scopus 로고
    • Conformational flipping of the N(6) substituent in diprotonated N6-(N-glycylcarbonyl)adenines: The role of N(6)H in purine-ring-protonated ureido adenines
    • Sonawane, K. D., Sonavane, U. B., & Tewari, R. (2000). Conformational flipping of the N(6) substituent in diprotonated N6-(N-glycylcarbonyl)adenines: The role of N(6)H in purine-ring-protonated ureido adenines. International Journal of Quantum Chemistry, 78, 398-405.
    • (2000) International Journal of Quantum Chemistry , vol.78 , pp. 398-405
    • Sonawane, K.D.1    Sonavane, U.B.2    Tewari, R.3
  • 42
    • 84987142842 scopus 로고
    • Protonation-induced conformational flipping in hypermodified nucleic acid base N6-(N-glycylcarbonyl) adenine
    • Tewari, R. (1994). Protonation-induced conformational flipping in hypermodified nucleic acid base N6-(N-glycylcarbonyl) adenine. International Journal of Quantum Chemistry, 51, 105-112.
    • (1994) International Journal of Quantum Chemistry , vol.51 , pp. 105-112
    • Tewari, R.1
  • 43
    • 0018121584 scopus 로고
    • Crystal structure of yeast phenylalanine transfer RNA: II. Structural features and functional implications
    • Holbrook, S. R., Sussman, J. L., Warrant, R. W., & Kim, S. H. (1978). Crystal structure of yeast phenylalanine transfer RNA: II. Structural features and functional implications. Journal of Molecular Biology, 123, 631-660.
    • (1978) Journal of Molecular Biology , vol.123 , pp. 631-660
    • Holbrook, S.R.1    Sussman, J.L.2    Warrant, R.W.3    Kim, S.H.4
  • 45
    • 0006402974 scopus 로고
    • Localized bond orbitals and the correlation problem III. Energy up to third order in the zero differential overlap approximation. Application to σ electron systems
    • Diner, S., Malrieu, J. P., Jordan, F., & Gilbert, M. (1969). Localized bond orbitals and the correlation problem III. Energy up to third order in the zero differential overlap approximation. Application to σ electron systems. Theoretical Chemistry Accounts, 15, 100-110.
    • (1969) Theoretical Chemistry Accounts , vol.15 , pp. 100-110
    • Diner, S.1    Malrieu, J.P.2    Jordan, F.3    Gilbert, M.4
  • 46
    • 0039076162 scopus 로고
    • Formaldehyde calculation of energy in the ground state by a perturbation method
    • Masson, A., Levy, B., & Malrieu, J. P. (1970). Formaldehyde calculation of energy in the ground state by a perturbation method. Theoretical Chemistry Accounts, 18, 193-207.
    • (1970) Theoretical Chemistry Accounts , vol.18 , pp. 193-207
    • Masson, A.1    Levy, B.2    Malrieu, J.P.3
  • 47
    • 0016022524 scopus 로고
    • Molecular orbital calculations on the conformation of amino acid residues of proteins
    • Pullman, B., & Pullman, A. (1974). Molecular orbital calculations on the conformation of amino acid residues of proteins. Advances in Protein Chemistry, 16, 347-526.
    • (1974) Advances in Protein Chemistry , vol.16 , pp. 347-526
    • Pullman, B.1    Pullman, A.2
  • 48
    • 0016908614 scopus 로고
    • Quantum-mechanical studies on the conformation of nucleic acids and their constituents
    • Pullman, B., & Saran, A. (1976). Quantum-mechanical studies on the conformation of nucleic acids and their constituents. Progress in Nucleic Acid Research and Molecular Biology, 18, 215-326.
    • (1976) Progress in Nucleic Acid Research and Molecular Biology , vol.18 , pp. 215-326
    • Pullman, B.1    Saran, A.2
  • 50
    • 84986525833 scopus 로고
    • Optimization of parameters for semiempirical methods. III Extension of PM3 to Be, Mg, Zn, Ga, Ge, As, Se, Cd, In, Sn, Sb, Te, Hg, Tl, Pb, and Bi
    • Stewart, J. J. P. (1991). Optimization of parameters for semiempirical methods. III Extension of PM3 to Be, Mg, Zn, Ga, Ge, As, Se, Cd, In, Sn, Sb, Te, Hg, Tl, Pb, and Bi. Journal of Computational Chemistry, 12, 320-341.
    • (1991) Journal of Computational Chemistry , vol.12 , pp. 320-341
    • Stewart, J.J.P.1
  • 52
    • 0000189651 scopus 로고
    • Density-functional thermochemistry. III. The role of exact exchange
    • Becke, A. D. (1992). Density-functional thermochemistry. III. The role of exact exchange. The Journal of Chemical Physics, 98, 5648-5652.
    • (1992) The Journal of Chemical Physics , vol.98 , pp. 5648-5652
    • Becke, A.D.1
  • 53
    • 33645949559 scopus 로고
    • Self-consistent molecular orbital methods. XXIII. A polarization-type basis set for second-row elements
    • Francl, M. M., Pietro, W. J., & Hehre, W. J. (1982). Self-consistent molecular orbital methods. XXIII. A polarization-type basis set for second-row elements. The Journal of Chemical Physics, 77, 3654-3665.
    • (1982) The Journal of Chemical Physics , vol.77 , pp. 3654-3665
    • Francl, M.M.1    Pietro, W.J.2    Hehre, W.J.3
  • 55
    • 0033862354 scopus 로고    scopus 로고
    • The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: A classic structure revisited
    • Shi, H., & Moore, P. B. (2000). The crystal structure of yeast phenylalanine tRNA at 1. 93 A resolution: A classic structure revisited. RNA, 6, 1091-1105.
    • (2000) Rna , vol.6 , pp. 1091-1105
    • Shi, H.1    Moore, P.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.