-
1
-
-
0003338719
-
Phosphorus assimilation and control of the phosphate regulon
-
In: F. C. Neidhardt RCI, J. L Ingraham, E. C. C Lin, K. B Low, B Magasanik, W. S Reznikoff, M Riley, M Schaechter, and H. E Umbarger, editor, 2 ed. Washington, D.C.: ASM Press
-
Wanner BL (1996) Phosphorus assimilation and control of the phosphate regulon. In: F. C. Neidhardt RCI, J. L Ingraham, E. C. C Lin, K. B Low, B Magasanik, W. S Reznikoff, M Riley, M Schaechter, and H. E Umbarger, editor. Escherichia coli and Salmonella: Cellular and Molecular Biology. 2 ed. Washington, D.C.: ASM Press. 1357-1381.
-
(1996)
Escherichia coli and Salmonella: Cellular and Molecular Biology
, pp. 1357-1381
-
-
Wanner, B.L.1
-
2
-
-
28044440054
-
Genome-wide transcriptional analysis of the phosphate starvation stimulon of Bacillus subtilis
-
Allenby NE, O'Connor N, Pragai Z, Ward AC, Wipat A, et al. (2005) Genome-wide transcriptional analysis of the phosphate starvation stimulon of Bacillus subtilis. J Bacteriol 187: 8063-8080.
-
(2005)
J Bacteriol
, vol.187
, pp. 8063-8080
-
-
Allenby, N.E.1
O'Connor, N.2
Pragai, Z.3
Ward, A.C.4
Wipat, A.5
-
3
-
-
0037767508
-
The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses
-
Ishige T, Krause M, Bott M, Wendisch VF, Sahm H, (2003) The phosphate starvation stimulon of Corynebacterium glutamicum determined by DNA microarray analyses. J Bacteriol 185: 4519-4529.
-
(2003)
J Bacteriol
, vol.185
, pp. 4519-4529
-
-
Ishige, T.1
Krause, M.2
Bott, M.3
Wendisch, V.F.4
Sahm, H.5
-
4
-
-
33947210693
-
Transcriptome analysis of phosphate starvation response in Escherichia coli
-
Baek JH, Lee SY, (2007) Transcriptome analysis of phosphate starvation response in Escherichia coli. J Microbiol Biotechnol 17: 244-252.
-
(2007)
J Microbiol Biotechnol
, vol.17
, pp. 244-252
-
-
Baek, J.H.1
Lee, S.Y.2
-
5
-
-
0029779668
-
Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli
-
VanBogelen RA, Olson ER, Wanner BL, Neidhardt FC, (1996) Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli. J Bacteriol 178: 4344-4366.
-
(1996)
J Bacteriol
, vol.178
, pp. 4344-4366
-
-
VanBogelen, R.A.1
Olson, E.R.2
Wanner, B.L.3
Neidhardt, F.C.4
-
6
-
-
33747621641
-
Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation
-
Martiny AC, Coleman ML, Chisholm SW, (2006) Phosphate acquisition genes in Prochlorococcus ecotypes: evidence for genome-wide adaptation. Proc Natl Acad Sci U S A 103: 12552-12557.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, pp. 12552-12557
-
-
Martiny, A.C.1
Coleman, M.L.2
Chisholm, S.W.3
-
7
-
-
4544275338
-
Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011
-
Krol E, Becker A, (2004) Global transcriptional analysis of the phosphate starvation response in Sinorhizobium meliloti strains 1021 and 2011. Mol Genet Genomics 272: 1-17.
-
(2004)
Mol Genet Genomics
, vol.272
, pp. 1-17
-
-
Krol, E.1
Becker, A.2
-
8
-
-
33645085270
-
The phosphate-starvation response in Vibrio cholerae O1 and phoB mutant under proteomic analysis: disclosing functions involved in adaptation, survival and virulence
-
von Kruger WM, Lery LM, Soares MR, de Neves-Manta FS, Batista e Silva CM, et al. (2006) The phosphate-starvation response in Vibrio cholerae O1 and phoB mutant under proteomic analysis: disclosing functions involved in adaptation, survival and virulence. Proteomics 6: 1495-1511.
-
(2006)
Proteomics
, vol.6
, pp. 1495-1511
-
-
von Kruger, W.M.1
Lery, L.M.2
Soares, M.R.3
de Neves-Manta, F.S.4
Batista e Silva, C.M.5
-
9
-
-
77949915670
-
Global regulation by the seven-component Pi signaling system
-
Hsieh Y-J, Wanner BL, (2010) Global regulation by the seven-component Pi signaling system. Curr Opin Microbiol 13: 198-203.
-
(2010)
Curr Opin Microbiol
, vol.13
, pp. 198-203
-
-
Hsieh, Y.-J.1
Wanner, B.L.2
-
10
-
-
0036583638
-
Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator
-
Blanco AG, Sola M, Gomis-Ruth FX, Coll M, (2002) Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator. Structure 10: 701-713.
-
(2002)
Structure
, vol.10
, pp. 701-713
-
-
Blanco, A.G.1
Sola, M.2
Gomis-Ruth, F.X.3
Coll, M.4
-
11
-
-
33749441282
-
Novel gene members in the Pho regulon of Escherichia coli
-
Baek JH, Lee SY, (2006) Novel gene members in the Pho regulon of Escherichia coli. FEMS Microbiol Lett 264: 104-109.
-
(2006)
FEMS Microbiol Lett
, vol.264
, pp. 104-109
-
-
Baek, J.H.1
Lee, S.Y.2
-
12
-
-
40549114662
-
CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure
-
Kuan PF, Chun H, Keles S (2008) CMARRT: a tool for the analysis of ChIP-chip data from tiling arrays by incorporating the correlation structure. Pac Symp Biocomput: 515-526.
-
(2008)
Pac Symp Biocomput
, pp. 515-526
-
-
Kuan, P.F.1
Chun, H.2
Keles, S.3
-
13
-
-
47249152834
-
The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions
-
Shimada T, Ishihama A, Busby SJ, Grainger DC, (2008) The Escherichia coli RutR transcription factor binds at targets within genes as well as intergenic regions. Nucleic Acids Res 36: 3950-3955.
-
(2008)
Nucleic Acids Res
, vol.36
, pp. 3950-3955
-
-
Shimada, T.1
Ishihama, A.2
Busby, S.J.3
Grainger, D.C.4
-
14
-
-
0142027814
-
Structure and function of the feed-forward loop network motif
-
Mangan S, Alon U, (2003) Structure and function of the feed-forward loop network motif. Proc Natl Acad Sci U S A 100: 11980-11985.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 11980-11985
-
-
Mangan, S.1
Alon, U.2
-
15
-
-
42149150462
-
The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis
-
Lamarche MG, Wanner BL, Crepin S, Harel J, (2008) The phosphate regulon and bacterial virulence: a regulatory network connecting phosphate homeostasis and pathogenesis. FEMS Microbiol Rev 32: 461-473.
-
(2008)
FEMS Microbiol Rev
, vol.32
, pp. 461-473
-
-
Lamarche, M.G.1
Wanner, B.L.2
Crepin, S.3
Harel, J.4
-
16
-
-
77953085251
-
Membrane homeostasis requires intact pst in extraintestinal pathogenic Escherichia coli
-
Lamarche MG, Harel J, (2010) Membrane homeostasis requires intact pst in extraintestinal pathogenic Escherichia coli. Curr Microbiol 60: 356-359.
-
(2010)
Curr Microbiol
, vol.60
, pp. 356-359
-
-
Lamarche, M.G.1
Harel, J.2
-
17
-
-
0037858060
-
Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli
-
Holtje JV, (1998) Growth of the stress-bearing and shape-maintaining murein sacculus of Escherichia coli. Microbiol Mol Biol Rev 62: 181-203.
-
(1998)
Microbiol Mol Biol Rev
, vol.62
, pp. 181-203
-
-
Holtje, J.V.1
-
18
-
-
48149087593
-
Modulation of hexa-acyl pyrophosphate lipid A population under Escherichia coli phosphate (Pho) regulon activation
-
Lamarche MG, Kim SH, Crepin S, Mourez M, Bertrand N, et al. (2008) Modulation of hexa-acyl pyrophosphate lipid A population under Escherichia coli phosphate (Pho) regulon activation. J Bacteriol 190: 5256-5264.
-
(2008)
J Bacteriol
, vol.190
, pp. 5256-5264
-
-
Lamarche, M.G.1
Kim, S.H.2
Crepin, S.3
Mourez, M.4
Bertrand, N.5
-
19
-
-
23744436588
-
The lipid A palmitoyltransferase PagP: molecular mechanisms and role in bacterial pathogenesis
-
Bishop RE, (2005) The lipid A palmitoyltransferase PagP: molecular mechanisms and role in bacterial pathogenesis. Mol Microbiol 57: 900-912.
-
(2005)
Mol Microbiol
, vol.57
, pp. 900-912
-
-
Bishop, R.E.1
-
20
-
-
23644448293
-
Role of lipid A palmitoylation in bacterial pathogenesis
-
Bishop RE, Kim SH, El Zoeiby A, (2005) Role of lipid A palmitoylation in bacterial pathogenesis. J Endotoxin Res 11: 174-180.
-
(2005)
J Endotoxin Res
, vol.11
, pp. 174-180
-
-
Bishop, R.E.1
Kim, S.H.2
El Zoeiby, A.3
-
21
-
-
0442297627
-
Survival of Escherichia coli O157:H7 in set yogurt as influenced by the production of an exopolysaccharide, colanic acid
-
Lee SM, Chen J, (2004) Survival of Escherichia coli O157:H7 in set yogurt as influenced by the production of an exopolysaccharide, colanic acid. J Food Prot 67: 252-255.
-
(2004)
J Food Prot
, vol.67
, pp. 252-255
-
-
Lee, S.M.1
Chen, J.2
-
22
-
-
33646862777
-
Role of colanic acid exopolysaccharide in the survival of enterohaemorrhagic Escherichia coli O157:H7 in simulated gastrointestinal fluids
-
Mao Y, Doyle MP, Chen J, (2006) Role of colanic acid exopolysaccharide in the survival of enterohaemorrhagic Escherichia coli O157:H7 in simulated gastrointestinal fluids. Lett Appl Microbiol 42: 642-647.
-
(2006)
Lett Appl Microbiol
, vol.42
, pp. 642-647
-
-
Mao, Y.1
Doyle, M.P.2
Chen, J.3
-
23
-
-
0027420797
-
Correlation between the inhibition of cell growth by accumulated polyamines and the decrease of magnesium and ATP
-
He Y, Kashiwagi K, Fukuchi J, Terao K, Shirahata A, et al. (1993) Correlation between the inhibition of cell growth by accumulated polyamines and the decrease of magnesium and ATP. Eur J Biochem 217: 89-96.
-
(1993)
Eur J Biochem
, vol.217
, pp. 89-96
-
-
He, Y.1
Kashiwagi, K.2
Fukuchi, J.3
Terao, K.4
Shirahata, A.5
-
24
-
-
0032815524
-
Role of Escherichia coli RpoS, LexA and H-NS global regulators in metabolism and survival under aerobic, phosphate-starvation conditions
-
Gerard F, Dri AM, Moreau PL, (1999) Role of Escherichia coli RpoS, LexA and H-NS global regulators in metabolism and survival under aerobic, phosphate-starvation conditions. Microbiology 145 (Pt 7): 1547-1562.
-
(1999)
Microbiology
, vol.145
, Issue.Pt 7
, pp. 1547-1562
-
-
Gerard, F.1
Dri, A.M.2
Moreau, P.L.3
-
25
-
-
0035209075
-
Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli
-
Seaver LC, Imlay JA, (2001) Alkyl hydroperoxide reductase is the primary scavenger of endogenous hydrogen peroxide in Escherichia coli. J Bacteriol 183: 7173-7181.
-
(2001)
J Bacteriol
, vol.183
, pp. 7173-7181
-
-
Seaver, L.C.1
Imlay, J.A.2
-
26
-
-
6044232024
-
Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions
-
Moreau PL, (2004) Diversion of the metabolic flux from pyruvate dehydrogenase to pyruvate oxidase decreases oxidative stress during glucose metabolism in nongrowing Escherichia coli cells incubated under aerobic, phosphate starvation conditions. J Bacteriol 186: 7364-7368.
-
(2004)
J Bacteriol
, vol.186
, pp. 7364-7368
-
-
Moreau, P.L.1
-
27
-
-
0347419266
-
Bacterial production of methylglyoxal: a survival strategy or death by misadventure
-
Booth IR, Ferguson GP, Miller S, Li C, Gunasekera B, et al. (2003) Bacterial production of methylglyoxal: a survival strategy or death by misadventure? Biochem Soc Trans 31: 1406-1408.
-
(2003)
Biochem Soc Trans
, vol.31
, pp. 1406-1408
-
-
Booth, I.R.1
Ferguson, G.P.2
Miller, S.3
Li, C.4
Gunasekera, B.5
-
28
-
-
0031691147
-
Methylglyoxal production in bacteria: suicide or survival
-
Ferguson GP, Totemeyer S, MacLean MJ, Booth IR, (1998) Methylglyoxal production in bacteria: suicide or survival? Arch Microbiol 170: 209-218.
-
(1998)
Arch Microbiol
, vol.170
, pp. 209-218
-
-
Ferguson, G.P.1
Totemeyer, S.2
MacLean, M.J.3
Booth, I.R.4
-
29
-
-
31544450286
-
Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection
-
Baba T, Ara T, Hasegawa M, Takai Y, Okumura Y, et al. (2006) Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2: 2006 0008.
-
(2006)
Mol Syst Biol
, vol.2
-
-
Baba, T.1
Ara, T.2
Hasegawa, M.3
Takai, Y.4
Okumura, Y.5
-
30
-
-
0034612342
-
One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products
-
Datsenko KA, Wanner BL, (2000) One-step inactivation of chromosomal genes in Escherichia coli K-12 using PCR products. Proc Natl Acad Sci U S A 97: 6640-6645.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, pp. 6640-6645
-
-
Datsenko, K.A.1
Wanner, B.L.2
-
31
-
-
0035910078
-
Epitope tagging of chromosomal genes in Salmonella
-
Uzzau S, Figueroa-Bossi N, Rubino S, Bossi L, (2001) Epitope tagging of chromosomal genes in Salmonella. Proc Natl Acad Sci U S A 98: 15264-15269.
-
(2001)
Proc Natl Acad Sci U S A
, vol.98
, pp. 15264-15269
-
-
Uzzau, S.1
Figueroa-Bossi, N.2
Rubino, S.3
Bossi, L.4
-
32
-
-
84867179816
-
Phosphorus
-
APHA A, and WEF, In: Eaton AD, L. S Clesceri, and A. E Greenberg, editor, 19 ed. Washington, DC.: American Public Health Association
-
APHA A, and WEF (1995) Phosphorus. In: Eaton AD, L. S Clesceri, and A. E Greenberg, editor. Standard Methods for the Examination of Water and Wastewater. 19 ed. Washington, DC.: American Public Health Association. 4-106-104-115.
-
(1995)
Standard Methods for the Examination of Water and Wastewater
-
-
-
33
-
-
44849093465
-
Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts
-
Cho BK, Knight EM, Barrett CL, Palsson BO, (2008) Genome-wide analysis of Fis binding in Escherichia coli indicates a causative role for A-/AT-tracts. Genome Res 18: 900-910.
-
(2008)
Genome Res
, vol.18
, pp. 900-910
-
-
Cho, B.K.1
Knight, E.M.2
Barrett, C.L.3
Palsson, B.O.4
-
34
-
-
33846659467
-
Transcription factor distribution in Escherichia coli: studies with FNR protein
-
Grainger DC, Aiba H, Hurd D, Browning DF, Busby SJ, (2007) Transcription factor distribution in Escherichia coli: studies with FNR protein. Nucleic Acids Res 35: 269-278.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 269-278
-
-
Grainger, D.C.1
Aiba, H.2
Hurd, D.3
Browning, D.F.4
Busby, S.J.5
-
35
-
-
34447277157
-
Ringo-an R/Bioconductor package for analyzing ChIP-chip readouts
-
Toedling J, Skylar O, Krueger T, Fischer JJ, Sperling S, et al. (2007) Ringo-an R/Bioconductor package for analyzing ChIP-chip readouts. BMC Bioinformatics 8: 221.
-
(2007)
BMC Bioinformatics
, vol.8
, pp. 221
-
-
Toedling, J.1
Skylar, O.2
Krueger, T.3
Fischer, J.J.4
Sperling, S.5
-
36
-
-
33644872577
-
Limma: linear models for microarray data
-
In: Gentleman VC, S Dudoit, R Irizarry, W Huber, editor, New York: Springer
-
Smyth GK (2005) Limma: linear models for microarray data. In: Gentleman VC, S Dudoit, R Irizarry, W Huber, editor. Bioinformatics and Computational Biology Solutions using R and Bioconductor. New York: Springer. 397-420.
-
(2005)
Bioinformatics and Computational Biology Solutions using R and Bioconductor
, pp. 397-420
-
-
Smyth, G.K.1
-
37
-
-
0242333835
-
Normalization of cDNA microarray data
-
Smyth GK, Speed T, (2003) Normalization of cDNA microarray data. Methods 31: 265-273.
-
(2003)
Methods
, vol.31
, pp. 265-273
-
-
Smyth, G.K.1
Speed, T.2
-
38
-
-
0028685490
-
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
-
Bailey TL, Elkan C, (1994) Fitting a mixture model by expectation maximization to discover motifs in biopolymers. Proc Int Conf Intell Syst Mol Biol 2: 28-36.
-
(1994)
Proc Int Conf Intell Syst Mol Biol
, vol.2
, pp. 28-36
-
-
Bailey, T.L.1
Elkan, C.2
-
39
-
-
0025008168
-
Sequence logos: a new way to display consensus sequences
-
Schneider TD, Stephens RM, (1990) Sequence logos: a new way to display consensus sequences. Nucleic Acids Res 18: 6097-6100.
-
(1990)
Nucleic Acids Res
, vol.18
, pp. 6097-6100
-
-
Schneider, T.D.1
Stephens, R.M.2
-
40
-
-
0142121516
-
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
-
Irizarry RA, Hobbs B, Collin F, Beazer-Barclay YD, Antonellis KJ, et al. (2003) Exploration, normalization, and summaries of high density oligonucleotide array probe level data. Biostatistics 4: 249-264.
-
(2003)
Biostatistics
, vol.4
, pp. 249-264
-
-
Irizarry, R.A.1
Hobbs, B.2
Collin, F.3
Beazer-Barclay, Y.D.4
Antonellis, K.J.5
-
41
-
-
4544341015
-
Linear models and empirical bayes methods for assessing differential expression in microarray experiments
-
Smyth GK, (2004) Linear models and empirical bayes methods for assessing differential expression in microarray experiments. Stat Appl Genet Mol Biol 3: Article3.
-
(2004)
Stat Appl Genet Mol Biol
, vol.3
-
-
Smyth, G.K.1
-
42
-
-
0042902833
-
The COG database: an updated version includes eukaryotes
-
Tatusov RL, Fedorova ND, Jackson JD, Jacobs AR, Kiryutin B, et al. (2003) The COG database: an updated version includes eukaryotes. BMC Bioinformatics 4: 41.
-
(2003)
BMC Bioinformatics
, vol.4
, pp. 41
-
-
Tatusov, R.L.1
Fedorova, N.D.2
Jackson, J.D.3
Jacobs, A.R.4
Kiryutin, B.5
-
43
-
-
0029896773
-
The activation of PhoB by acetylphosphate
-
McCleary WR, (1996) The activation of PhoB by acetylphosphate. Mol Microbiol 20: 1155-1163.
-
(1996)
Mol Microbiol
, vol.20
, pp. 1155-1163
-
-
McCleary, W.R.1
-
44
-
-
15444350252
-
The complete genome sequence of Escherichia coli K-12
-
Blattner FR, Plunkett G 3rd, Bloch CA, Perna NT, Burland V, et al (1997) The complete genome sequence of Escherichia coli K-12. Science 277: 1453-1462.
-
(1997)
Science
, vol.277
, pp. 1453-1462
-
-
Blattner, F.R.1
Plunkett 3rd, G.2
Bloch, C.A.3
Perna, N.T.4
Burland, V.5
|