Role of Escherichia coli RpoS, LexA and H-NS global regulators in metabolism and survival under aerobic, phosphate-starvation conditions

Microbiology

Volumn 145, Issue 7, 1999, Pages 1547-1562

  Gérard, Fabien ^a   Dri, Anna Maria ^a   Moreau, Patrice L ^a  

^a CNRS   (France)

Author keywords

H NS; LexA; Phosphate starvation; Reactive oxygen species; RpoS

Indexed keywords

ARGININE; BACTERIAL DNA; BACTERIAL PROTEIN; GLUCOSE; PUTRESCINE; PYRUVATE DEHYDROGENASE COMPLEX; REACTIVE OXYGEN METABOLITE; RECA PROTEIN; SPERMIDINE; THREONINE;

AEROBIC METABOLISM; ARTICLE; BACTERIAL GENE; BACTERIAL METABOLISM; DNA STRAND BREAKAGE; ESCHERICHIA COLI; GENE EXPRESSION; GENE MUTATION; NONHUMAN; PRIORITY JOURNAL; REGULON;

ESCHERICHIA COLI;

EID: 0032815524     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/13500872-145-7-1547     Document Type: Article

References (80)

1. S in stationary phase. Mol Microbiol 13, 265-272.
2. Anderson, D. G. & Kowakzykowski, S. C. (1998). Reconstitution of an SOS response pathway: derepression of transcription in response to DNA breaks. Cell 95, 975-979.
3. Asai, T., Bates, D. B. & Kogoma, T. (1994). DNA replication triggered by double-stranded breaks in E. coli: dependence on homologous recombination functions. Cell 78, 1051-1061.
4. Atlung, T. & Ingmer, H. (1997). H-NS: a modulator of environmentally regulated gene expression. Mol Microbiol 24, 7-17.
5. Bachmann, B. J. (1996). Derivations and genotypes of some mutant derivatives of Escherichia coli K-12. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 2460-2488. Edited by F. C. Neidhardt and others. Washington, DC : American Society for Microbiology.
6. S-dependent genes in Escherichia coli. J Bacteriol 177, 3455-3464.
7. Blanar, M. A., Sandler, S. J., Armengod, M.-E., Ream, L. W. & Clark, A. J. (1984). Molecular analysis of the recF gene of Escherichia coli. Proc Natl Acad Sci USA 81, 4622-4626.
8. Böck, A. & Sawers, G. (1996). Fermentation. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 262-282. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
9. S-dependent genes in Escherichia coli. J Bacteriol 177, 413-422.
10. Brawn, M. K. & Fridovich, I. (1985). Increased superoxide radical production evokes inducible DNA repair in Escherichia coli. J Biol Chem 260, 922-925.
11. Chang, Y.-Y., Wang, A.-Y. & Cronan, J. E., Jr (1994). Expression of Escherichia coli pyruvate oxidase (PoxB) depends on the sigma factor encoded by the rpoS (katF) gene. Mol Microbiol 11, 1019-1028.
12. Chol Ha, H., Sirisoma, N. S., Kuppusamy, P., Zweier, J. L., Woster, P. M. & Casero, R. A. (1998). The natural polyamine spermine functions directly as a free radical scavenger. Proc Natl Acad Sci USA 95, 11140-11145.
13. Cox, M. M. (1997). Recombinational crossroads: eukaryotic enzymes and the limits of bacterial precedents. Proc Natl Acad Sci USA 94, 11764-11766.
14. Davis, B. D., Luger, S. M. & Tai, P. C. (1986). Role of ribosome degradation in the death of starved Escherichia coli cells. J Bacteriol 166, 439-445.
15. Davis, R. H., Morris, D. R. & Coffino, P. (1992). Sequestered end products and enzyme regulation: the case of ornithine decarboxylase. Microbiol Rev 56, 280-290.
16. Demple, B. & Harrison, L. (1994). Repair of oxidative damage to DNA: enzymology and biology. Annu Rev Biochem 63, 915-948.
17. Dersch, P., Kneip, S. & Bremer, E. (1994). The nucleoid-associated DNA-binding protein H-NS is required for the efficient adaptation of Escherichia coli K-12 to cold environment. Mol Gen Genet 245, 255-259.
18. S holoenzymes. Mol Microbiol 16, 649-656.
19. Dri, A.-M. & Moreau, P. L (1993). Phosphate starvation and low temperature as well as ultraviolet irradiation transcriptionally induce the Escherichia coli LexA-controlled gene sfiA. Mol Microbiol 8, 697-706.
20. Dri, A.-M. & Moreau, P. L. (1994). Control of the LexA regulon by pH : evidence for a reversible inactivation of the LexA repressor during the growth cycle of Escherichia coli. Mol Microbiol 12, 621-629.
21. Eggertsson, G. & Söll, D. (1988). Transfer ribonucleic acid-mediated suppression of termination codons in Escherichia coli. Microbiol Rev 52, 354-374.
22. El-Mansi, E. M. T. & Holms, W. H. (1989). Control of carbon flux to acetate excretion during growth of Escherichia coli in batch and continuous cultures. J Gen Microbiol 135, 2875-2883.
23. Gennis, R. B. & Stewart, V. (1996). Respiration. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 217-261. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
24. S is positively regulated by ppGpp. J Bacteriol 175, 7982-7989.
25. Glansdorff, N. (1996). Biosynthesis of arginine and polyamines. In Escherichia coli and Salmonella : Cellular and Molecular Biology, pp. 408-433. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
26. González-Flecha, B. & Demple, B. (1995). Metabolic sources of hydrogen peroxide in aerobically growing Escherichia coli. J Biol Chem 270, 13681-13687.
27. González-Flecha, B. & Demple, B. (1997). Homeosratic regulation of intracellular hydrogen peroxide concentration in aerobically growing Escherichia coli. J Bacteriol 179, 382-388.
28. Gort, A. S. & Imlay, J. A. (1998). Balance between endogenous superoxide stress and antioxidant defenses. J Bacteriol 180, 1402-1410.
29. Guest, J. R. (1992). Oxygen-regulated gene expression in Escherichia coli. J Gen Microbiol 138, 2253-2263.
30. Hengge-Aronis, R. (1996). Regulation of gene expression during entry into stationary phase. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1497-1512. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
31. Henle, E. S. & Linn, S. (1997). Formation, prevention, and repair of DNA damage by iron/hydrogen peroxide. J Biol Chem 272, 19095-19098.
32. 2+-mediated Fenton reaction has possible biological implications. J Biol Chem 274, 962-971.
33. Higgins, C. F., Dorman, C. J., Stirling, D. A., Waddell, L., Booth, I. R., May, G. & Bremer, E. (1988). A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli. Cell 52, 569-584.
34. Holms, H. (1996). Flux analysis and control of the central metabolic pathways in Escherichia coli. FEMS Microbiol Rev 19, 85-116.
35. Huisman, O. & D'Ari, R. (1983). Effect of suppressors of SOSmediated filamentation on sfiA operon expression in Escherichia coli. J Bacteriol 153, 169-175.
36. Huisman, G. W. & Kolter, R. (1994). Sensing starvation: a homoserine lactone-dependent signaling pathway in Escherichia coli. Science 265, 537-539.
37. Keyer, K. & Imlay, J. A. (1996). Superoxide accelerates DNA damage by elevating free-iron levels. Proc Natl Acad Sci USA 93, 13635-13640.
38. Kolodner, R., Fishel, R. A. & Howard, M. (1985). Genetic recombination of bacterial plasmid DNA: effect of RecF pathway mutations on plasmid recombination in Escherichia coli. J Bacteriol 163, 1060-1066.
39. Kowakzykowski, S. C., Dixon, D. A., Eggleston, A. K., Lauder, S. D. & Rehrauer, W. M. (1994). Biochemistry of homologous recombination in Escherichia coli. Microbiol Rev 58, 401-465.
40. Kreutzer, D. & Essigmann, J. M. (1998). Oxidized, deaminated cytosines are a source of C → T transitions in vivo. Proc Natl Acad Sci USA 95, 3578-3582.
41. Krueger, J. H., Elledge, S. J. & Walker, G. C. (1983). Isolation and characterization of Tn5 insertion mutations in the lexA gene of Escherichia coli. J Bacteriol 153, 1368-1378.
42. Landgraf, J. R., Levinthal, M. & Danchin, A. (1994). The role of H-NS in one carbon metabolism. Biochimie 76, 1063-1070.
43. Lange, R. & Hengge-Aronis, R. (1991). Identification of a central regulator of stationary-phase gene expression in Escherichia coli. Mol Microbiol 5, 49-59.
44. Laurent-Winter, C, Ngo, S., Danchin, A. & Bertin, P. (1997). Role of Escherichia coli histone-like nucleoid-structuring protein in bacterial metabolism and stress response. Identification of targets by two-dimensional electrophoresis. Eur J Biochem 244, 767-773.
45. Lloyd, R. G. & Low, K. B. (1996). Homologous recombination. In Escherichia colt and Salmonella : Cellular and Molecular Biology, pp. 2236-2255. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
46. Lloyd, R. G., Buckman, C. & Benson, F. E. (1987). Genetic analysis of conjugational recombination in Escherichia coli K12 strains deficient in RecBCD enzyme. J Gen Microbiol 133, 2531-2538.
47. Lynch, A. S. & Lin, E. C. C. (1996). Response to molecular oxygen. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 1526-1538. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
48. Mandal, T. N., Mahdi, A. A., Sharples, G. J. & Lloyd, R. G. (1993). Resolution of Holliday intermediates in recombination and DNA repair: indirect suppression of ruvA, ruvB, and ruvC mutations. J Bacteriol 175, 4325-4334.
49. Miller, J. H. (1972). Experiments in Molecular Genetics. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
50. Moreau, P. L. (1987). Effects of overproduction of single-stranded DNA-binding protein on RecA protein-dependent processes in Escherichia coli. J Mol Biol 194, 621-634.
51. Moreau, P. L (1988). Overproduction of single-stranded-DNA-binding protein specifically inhibits recombination of UV-irradiated bacteriophage DNA in Escherichia coli. J Bacteriol 170, 2493-2500.
52. Mount, D.W. & Kosel, C (1975). Ultraviolet light-induced mutation in UV-resistant, thermosensitive derivatives of lexA1 strains of Escherichia coli K-12. Mol Gen Genet 136, 95-106.
53. Neidhardt F. C., Bloch, P. L. & Smith, D. (1974). Culture medium for enterobacteria. J Bacteriol 119, 736-747.
54. Neidhardt, F. C., Bloch, P. L., Pedersen, S. & Reeh, S. (1977). Chemical measurement of steady-state levels of ten aminoacyltransfer ribonucleic acid synthetases in Escherichia coli. J Bacteriol 129, 378-387.
55. Nyström, T. (1994). The glucose-starvation stimulon of Escherichia coli: induced and repressed synthesis of enzymes of central metabolic pathways and role of acetyl phosphate in gene expression and starvation survival. Mol Microbiol 12, 833-843.
56. Nyström, T., Larsson, C. & Gustafsson, L. (1996). Bacterial defense against aging: role of the Escherichia coli ArcA regulator in gene expression, readjusted energy flux and survival during stasis. EMBO 15, 3219-3228.
57. Ossanna, N. & Mount, D. W. (1989). Mutations in uvrD induce the SOS response in Escherichia coli. J Bacteriol 171, 303-307.
58. Prather, N. E., Mims, B. H. & Murgola, E. J. (1983). supG and supL in Escherichia coli code for mutant lysine tRNAs. Nucleic Acids Res 23, 8283-8286.
59. Quail, M. A., Haydon, D. J. & Guest, J. R. (1994). The pdhR-aceEP-lpd operon of Escherichia coli expresses the pyruvate dehydrogenase complex. Mol Microbiol 12, 95-104.
60. Rao, N. N., Roberts, M. F., Torriani, A. & Yashphe, J. (1993). Effect of glpT and glpD mutations on expression of the phoA gene in Escherichia coli. J Bacteriol 175, 74-79.
61. Reitzer, L. J. (1996). Sources of nitrogen and their utilization. In Escherichia coli and Salmonella : Cellular and Molecular Biology, pp. 380-390. Edited by F. C. Neidhardt and others. Washington, DC : American Society for Microbiology.
62. Rupp, W. D. (1996). DNA repair mechanisms. In Escherichia coli and Salmonella: Cellular and Molecular Biology, pp. 2277-2294. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
63. Sak, B. D., Eisenstark, A. & Touati, D. (1989). Exonuclease III and the catalase hydroperoxidase II in Escherichia coli are both regulated by the katF gene product. Proc Natl Acad Sci USA 86, 3271-3275.
64. Sassanfar, M. & Roberts. J. W. (1990). Nature of the SOS-inducing signal in Escherichia coli. The involvement of DNA replication. J Mol Biol 212, 79-96.
65. Satishchandran, C., Taylor, J. C. & Markham, G. D. (1990). Novel Escherichia coli K-12 mutants impaired in S-adenosylmethionine synthesis. J Bacteriol 172, 4489-4496.
66. Schneider, B. L., Kiupakis, A. K. & Reitzer, L. J. (1998). Arginine catabolism and the arginine succinyltransferase pathway in Escherichia coli. J Bacteriol 180, 4278-4286.
67. Sharples, G. J., Benson, F. E., Illing, G. T. & Lloyd, R. G. (1990). Molecular and functional analysis of the ruv region of Escherichia coli K-12 reveals three genes involved in DNA repair and recombination. Mol Gen Genet 221, 219-226.
68. Shi, X., Waasdorp, B. C. & Bennett, G. N. (1993). Modulation of acid-induced amino acid decarboxylase gene expression by hns in Escherichia coli. J Bacteriol 175, 1182-1186.
69. Singer, M., Baker, T. A., Schnitzler, G. & 7 other authors (1989). A collection of strains containing genetically linked alternating antibiotic resistance elements for genetic mapping of Escherichia coli. Microbiol Rev 53, 1-24.
70. Smith, M. W. & Neidhardt, F. C. (1983). 2-Oxoacid dehydrogenase complexes of Escherichia coli: cellular amount and pattern of synthesis. J Bacteriol 156, 81-88.
71. Stim-Herndon, K. P., Flores, T. M. & Bennett, G. N. (1996). Molecular characterization of adiY, a regulatory gene which affects expression of the biodegradative acid-induced arginine decarboxylase gene (adiA) of Escherichia coli. Microbiology 142, 1311-1320.
72. Umezu, K. & Kolodner, R. D. (1994). Protein interactions in genetic recombination in Escherichia coli. J Biol Chem 269, 30005-30013.
73. VanBogelen, R. A.. Olson, E. R., Wanner, B. L & Neidhardt, F. C. (1996). Global analysis of proteins synthesized during phosphorus restriction in Escherichia coli. J Bacteriol 178, 4344-4366.
74. Vaughan, M. (1997). Minireview Prologue. Oxidative modification of macromolecules minireview series. J Biol Chem 272, 18513.
75. Visick, J. E. & Clarice, S. (1997). RpoS- and OxyR-independent induction of HPI catalase at stationary phase in Escherichia coli and identification of rpoS mutations in common laboratory strains. J Bacteriol 179, 4158-4163.
76. Walker, G. C. (1996). The SOS response of Escherichia coli. In Escherichia coli and Salmonella : Cellular and Molecular Biology, pp. 1400-1416. Edited by F. C. Neidhardt and others. Washington, DC: American Society for Microbiology.
77. Wanner, B. L. (1986). Novel regulatory mutants of the phosphate regulon in Escherichia coli K-12. J Mol Biol 191, 39-58.
78. Willis, D. K., Uhlin, B. E., Amini, K. S. & Clark, A. J. (1981). Physical mapping of the srl recA region of Escherichia coli. analysis of Tn10 generated insertions and deletions. Mol Gen Genet 183, 497-504.
79. Yamada, H., Yoshida, T., Tanaka, K., Sasakawa, C. & Mizuno, T. (1991). Molecular analysis of the Escherichia coli hns gene encoding a DNA-binding protein, which preferentially recognizes curved DNA sequences. Mol Gen Genet 230, 332-336.
80. Zambrano, M. M., Siegele, D. A., Almirón, M., Tormo, A. & Kolter, R. (1993). Microbial competition: Escherichia coli mutants that take over stationary phase cultures. Science 259, 1757-1760.