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Volumn 64, Issue 3, 2012, Pages 738-749

Microbial and Geochemical Assessment of Bauxitic Un-mined and Post-mined Chronosequence Soils from Mocho Mountains, Jamaica

Author keywords

[No Author keywords available]

Indexed keywords

ACIDOBACTERIA; BACTERIA (MICROORGANISMS); FIRMICUTES; PROTEOBACTERIA;

EID: 84866735717     PISSN: 00953628     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00248-012-0020-3     Document Type: Article
Times cited : (24)

References (55)
  • 1
    • 77953809386 scopus 로고    scopus 로고
    • Anthropogenic disturbance affects the structure of bacterial communities
    • Ager D, Evans S, Li H, Lilley AK, van der Gast CK (2009) Anthropogenic disturbance affects the structure of bacterial communities. Environ Microbiol 12: 670-678.
    • (2009) Environ Microbiol , vol.12 , pp. 670-678
    • Ager, D.1    Evans, S.2    Li, H.3    Lilley, A.K.4    van der Gast, C.K.5
  • 2
    • 0017229998 scopus 로고
    • An ignition method for determination of total phosphorus in lake sediments
    • Andersen JM (1976) An ignition method for determination of total phosphorus in lake sediments. Water Res 10: 329-331.
    • (1976) Water Res , vol.10 , pp. 329-331
    • Andersen, J.M.1
  • 4
    • 0000286531 scopus 로고
    • An ordination of the upland forest communities of southern Wisconsin
    • Bray JR, Curtis JT (1957) An ordination of the upland forest communities of southern Wisconsin. Ecological Monographs 27: 325-349.
    • (1957) Ecological Monographs , vol.27 , pp. 325-349
    • Bray, J.R.1    Curtis, J.T.2
  • 7
    • 84866734408 scopus 로고
    • Evaluating reclamation success: The ecological consideration
    • U. S. Department of Agriculture, Forest Service, Rodnor, PA
    • Chambers JC, Wade GL (1990) Evaluating reclamation success: the ecological consideration. General Technical Report NE-164. U. S. Department of Agriculture, Forest Service, Rodnor, PA.
    • (1990) General Technical Report NE-164
    • Chambers, J.C.1    Wade, G.L.2
  • 8
    • 0001463548 scopus 로고
    • Nonparametric estimation of the number of classes in a population
    • Chao A (1984) Nonparametric estimation of the number of classes in a population. Scandinavian J Stat 11: 265-270.
    • (1984) Scandinavian J Stat , vol.11 , pp. 265-270
    • Chao, A.1
  • 9
    • 63149144977 scopus 로고    scopus 로고
    • Impact of sideways and bottom up control factors on bacterial community succession over a tidal cycle
    • Chauhan A, Cherrier J, Williams HN (2009) Impact of sideways and bottom up control factors on bacterial community succession over a tidal cycle. Proc Natl Acad Sci USA 106: 4301-4306.
    • (2009) Proc Natl Acad Sci USA , vol.106 , pp. 4301-4306
    • Chauhan, A.1    Cherrier, J.2    Williams, H.N.3
  • 10
    • 33645112674 scopus 로고    scopus 로고
    • Syntrophic archaeal associations differ with nutrient impact in a freshwater marsh
    • Chauhan A, Ogram A, Reddy KR (2006) Syntrophic archaeal associations differ with nutrient impact in a freshwater marsh. J Appl Microbiol 100: 73-84.
    • (2006) J Appl Microbiol , vol.100 , pp. 73-84
    • Chauhan, A.1    Ogram, A.2    Reddy, K.R.3
  • 11
    • 2942535902 scopus 로고    scopus 로고
    • Syntrophic-methanogenic associations along a nutrient gradient in the Florida Everglades
    • Chauhan A, Ogram A, Reddy KR (2004) Syntrophic-methanogenic associations along a nutrient gradient in the Florida Everglades. Appl Environ Microbiol 70: 3475-3484.
    • (2004) Appl Environ Microbiol , vol.70 , pp. 3475-3484
    • Chauhan, A.1    Ogram, A.2    Reddy, K.R.3
  • 12
    • 33947232804 scopus 로고    scopus 로고
    • Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition
    • Cleveland CC, Nemergut DR, Schmidt SK, Townsend AR (2007) Increases in soil respiration following labile carbon additions linked to rapid shifts in soil microbial community composition. Biogeochemistry 82: 229-240.
    • (2007) Biogeochemistry , vol.82 , pp. 229-240
    • Cleveland, C.C.1    Nemergut, D.R.2    Schmidt, S.K.3    Townsend, A.R.4
  • 13
    • 0041101456 scopus 로고
    • Environmental impact of bauxite mining and processing in Jamaica
    • Coke LB, Weir CC, Hill VG (1987) Environmental impact of bauxite mining and processing in Jamaica. Soc and Econ Stud 36: 289-333.
    • (1987) Soc and Econ Stud , vol.36 , pp. 289-333
    • Coke, L.B.1    Weir, C.C.2    Hill, V.G.3
  • 15
    • 42049111815 scopus 로고    scopus 로고
    • Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing
    • Dowd SE, Sun Y et al (2008) Survey of bacterial diversity in chronic wounds using pyrosequencing, DGGE, and full ribosome shotgun sequencing. BMC Microbiol 8: 43.
    • (2008) BMC Microbiol , vol.8 , pp. 43
    • Dowd, S.E.1    Sun, Y.2
  • 16
    • 0032914126 scopus 로고    scopus 로고
    • Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning
    • Dunbar J, Takala S, Barns SM, Davis JA, Kuske CR (1999) Levels of bacterial community diversity in four arid soils compared by cultivation and 16S rRNA gene cloning. Appl Environ Microbiol 65: 1662-1669.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1662-1669
    • Dunbar, J.1    Takala, S.2    Barns, S.M.3    Davis, J.A.4    Kuske, C.R.5
  • 17
    • 0002811097 scopus 로고
    • Strategies for determining consequences of harvesting and associated practices on long-term productivity
    • W. J. Dyck and D. W. Cole (Eds.), New York: Chapman & Hall
    • Dyck WJ, Cole DW (1994) Strategies for determining consequences of harvesting and associated practices on long-term productivity. In: Dyck WJ, Cole DW (eds) Impacts of forest harvesting on long-term site productivity. Chapman & Hall, New York, pp 11-40.
    • (1994) Impacts of Forest Harvesting on Long-Term Site Productivity , pp. 11-40
    • Dyck, W.J.1    Cole, D.W.2
  • 19
    • 37349019467 scopus 로고    scopus 로고
    • Bauxite mining restoration by Alcoa World Alumina Australia in Western Australia: social, political, historical, and environmental contexts
    • Gardner JH, Bell DT (2007) Bauxite mining restoration by Alcoa World Alumina Australia in Western Australia: social, political, historical, and environmental contexts. Restoration Ecology 15: S3-S10.
    • (2007) Restoration Ecology , vol.15
    • Gardner, J.H.1    Bell, D.T.2
  • 21
    • 33846814896 scopus 로고    scopus 로고
    • Pre- and post-mined bauxite soils of Jamaica: physical and chemical properties
    • Greenberg WA, Wilding LP (2007) Pre- and post-mined bauxite soils of Jamaica: physical and chemical properties. Soil Sci Soc Am J 71: 181-188.
    • (2007) Soil Sci Soc Am J , vol.71 , pp. 181-188
    • Greenberg, W.A.1    Wilding, L.P.2
  • 22
    • 0035156761 scopus 로고    scopus 로고
    • Functional stability, substrate utilization and biological indicators of soils following environmental impacts
    • Griffiths BS, Bonkowski M, Roy J, Ritz K (2001) Functional stability, substrate utilization and biological indicators of soils following environmental impacts. Appl Soil Ecol 16: 49-61.
    • (2001) Appl Soil Ecol , vol.16 , pp. 49-61
    • Griffiths, B.S.1    Bonkowski, M.2    Roy, J.3    Ritz, K.4
  • 23
    • 43349091709 scopus 로고    scopus 로고
    • Functional resilience of soil microbial communities depends on both soil structure and microbial community composition
    • Griffiths BS, Hallett PD, Kuan HL, Gregory AS, Watts CW, Whitmore AP (2008) Functional resilience of soil microbial communities depends on both soil structure and microbial community composition. Biol Fertil Soils 44: 745-754.
    • (2008) Biol Fertil Soils , vol.44 , pp. 745-754
    • Griffiths, B.S.1    Hallett, P.D.2    Kuan, H.L.3    Gregory, A.S.4    Watts, C.W.5    Whitmore, A.P.6
  • 25
    • 68149108374 scopus 로고    scopus 로고
    • Soil microbial communities and restoration ecology: facilitators or followers?
    • Harris J (2009) Soil microbial communities and restoration ecology: facilitators or followers? Science 325: 573-574.
    • (2009) Science , vol.325 , pp. 573-574
    • Harris, J.1
  • 26
    • 56649085249 scopus 로고    scopus 로고
    • Environmental and anthropogenic controls over bacterial communities in wetland soils
    • Hartman WH, Richardson CJ, Vilgalys R, Bruland GL (2008) Environmental and anthropogenic controls over bacterial communities in wetland soils. PNAS 105: 17842-17847.
    • (2008) Pnas , vol.105 , pp. 17842-17847
    • Hartman, W.H.1    Richardson, C.J.2    Vilgalys, R.3    Bruland, G.L.4
  • 28
    • 37349079355 scopus 로고    scopus 로고
    • Beneficial soil microorganisms of the Jarrah forest and their recovery in bauxite Southwestern Australia
    • Jasper DA (2007) Beneficial soil microorganisms of the Jarrah forest and their recovery in bauxite Southwestern Australia. Restoration Ecology 15: S74-S84.
    • (2007) Restoration Ecology , vol.15
    • Jasper, D.A.1
  • 31
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid Southwestern United States that are present in many geographic regions
    • Kuske CR, Barns SM, Bush JD (1997) Diverse uncultivated bacterial groups from soils of the arid Southwestern United States that are present in many geographic regions. Appl Environ Microbiol 63: 3614-3621.
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Bush, J.D.3
  • 32
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • E. Stackebrandt and M. Goodfellow (Eds.), New York: Wiley
    • Lane DJ (1991) 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds) Nucleic acid techniques in bacterial systematics. Wiley, New York.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics
    • Lane, D.J.1
  • 33
    • 77953326475 scopus 로고    scopus 로고
    • Soil functional diversity analysis of a bauxite mined restoration chronosequence
    • Lewis D, White JR, Wafula D, Athar R, Williams HN, Chauhan A (2010) Soil functional diversity analysis of a bauxite mined restoration chronosequence. Microb Ecol 59: 710-723.
    • (2010) Microb Ecol , vol.59 , pp. 710-723
    • Lewis, D.1    White, J.R.2    Wafula, D.3    Athar, R.4    Williams, H.N.5    Chauhan, A.6
  • 34
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C, Knight R (2005) UniFrac: a new phylogenetic method for comparing microbial communities. Appl Environ Microbiol 71: 8228-8235.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 35
    • 0035704834 scopus 로고    scopus 로고
    • Implications of species loss in freshwater fish assemblages
    • Magurran AE, Phillip DAT (2001) Implications of species loss in freshwater fish assemblages. Ecography 24: 645-650.
    • (2001) Ecography , vol.24 , pp. 645-650
    • Magurran, A.E.1    Phillip, D.A.T.2
  • 36
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig AE, Glover LA, Prosser JI (1999) Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol 65: 1721-1730.
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 37
    • 84866742549 scopus 로고
    • Crop productivity as affected by depth of topsoil spread for reclaiming bauxite mined lands in Jamaica
    • Morgan GW (1974) Crop productivity as affected by depth of topsoil spread for reclaiming bauxite mined lands in Jamaica. Tropical Agric 51: 332-346.
    • (1974) Tropical Agric , vol.51 , pp. 332-346
    • Morgan, G.W.1
  • 38
    • 0036861572 scopus 로고    scopus 로고
    • Soil microbiological properties 20 years after surface mine reclamation: spatial analysis of rehabilitated and undisturbed sites
    • Mummey DL, Stahl PD, Buyer JS (2002) Soil microbiological properties 20 years after surface mine reclamation: spatial analysis of rehabilitated and undisturbed sites. Soil Biol Biochem 34: 1717-1725.
    • (2002) Soil Biol Biochem , vol.34 , pp. 1717-1725
    • Mummey, D.L.1    Stahl, P.D.2    Buyer, J.S.3
  • 39
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer G, De Waal EC, Uitterlinden AG (1993) Profiling of complex microbial populations by denaturing gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol 59: 695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 40
    • 0036146824 scopus 로고    scopus 로고
    • Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set
    • Nadkarni MA, Martin EF, Jacques NA, Hunter N (2002) Determination of bacterial load by real-time PCR using a broad-range (universal) probe and primers set. Microbiology 148: 257-266.
    • (2002) Microbiology , vol.148 , pp. 257-266
    • Nadkarni, M.A.1    Martin, E.F.2    Jacques, N.A.3    Hunter, N.4
  • 42
    • 0042126088 scopus 로고    scopus 로고
    • Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics
    • Quaiser A, Ochsenreiter T, Lanz C, Schuster SC, Treusch AH, Eck J, Schleper C (2003) Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol Microbiol 50: 563-575.
    • (2003) Mol Microbiol , vol.50 , pp. 563-575
    • Quaiser, A.1    Ochsenreiter, T.2    Lanz, C.3    Schuster, S.C.4    Treusch, A.H.5    Eck, J.6    Schleper, C.7
  • 44
    • 33644962444 scopus 로고    scopus 로고
    • Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil
    • Sait M, Davis KER, Janssen PH (2006) Effect of pH on isolation and distribution of members of subdivision 1 of the phylum Acidobacteria occurring in soil. Appl Environ Microbiol 72: 1852-1857.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 1852-1857
    • Sait, M.1    Davis, K.E.R.2    Janssen, P.H.3
  • 45
    • 0022861367 scopus 로고
    • Morphology, genesis and classification of three soils over limestone
    • Scholten JJ, Andriesse W (1986) Morphology, genesis and classification of three soils over limestone. Jamaica Geoderma 39: 1-40.
    • (1986) Jamaica Geoderma , vol.39 , pp. 1-40
    • Scholten, J.J.1    Andriesse, W.2
  • 47
    • 68649102261 scopus 로고    scopus 로고
    • Abundance, composition, diversity and novelty of soil Proteobacteria
    • Spain AM, Krumholz LR, Elshahed MS (2009) Abundance, composition, diversity and novelty of soil Proteobacteria. ISME J 3: 992-1000.
    • (2009) ISME J , vol.3 , pp. 992-1000
    • Spain, A.M.1    Krumholz, L.R.2    Elshahed, M.S.3
  • 48
    • 84866738303 scopus 로고    scopus 로고
    • ISBN 978-0-9756756-6-3. Proceedings of the first international seminar on mine closure 2006 In: First international seminar on mine closure, Perth, Western Australia, Australia, 13-15 September 2006, Australia: Northern Territory
    • Spain AV, Hinz DA, Ludwig JA, Tibbett M, Tongway DJ (2006) Mine closure and ecosystem development-Alcan Gove bauxite mine. Northern Territory, Australia, ISBN 978-0-9756756-6-3. Proceedings of the first international seminar on mine closure 2006 In: First international seminar on mine closure, Perth, Western Australia, Australia, 13-15 September 2006.
    • (2006) Mine Closure and Ecosystem Development-Alcan Gove Bauxite Mine
    • Spain, A.V.1    Hinz, D.A.2    Ludwig, J.A.3    Tibbett, M.4    Tongway, D.J.5
  • 49
    • 34547781750 scopus 로고    scopus 로고
    • MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0
    • Tamura K, Dudley J, Nei M, Kumar S (2007) MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4. 0. Mol Biol Evol 24: 1596-1599.
    • (2007) Mol Biol Evol , vol.24 , pp. 1596-1599
    • Tamura, K.1    Dudley, J.2    Nei, M.3    Kumar, S.4
  • 50
    • 40549089938 scopus 로고    scopus 로고
    • Microbial community succession and bacterial diversity in soils during 77 000 years of ecosystem development
    • Tarlera S, Jangid K, Ivester AH, Whitman WB, Williams MA (2008) Microbial community succession and bacterial diversity in soils during 77 000 years of ecosystem development. FEMS Microbiol Ecol 64: 129-140.
    • (2008) FEMS Microbiol Ecol , vol.64 , pp. 129-140
    • Tarlera, S.1    Jangid, K.2    Ivester, A.H.3    Whitman, W.B.4    Williams, M.A.5
  • 51
    • 84866738304 scopus 로고    scopus 로고
    • Large-scale mine site restoration of Australian eucalypt forests after bauxite mining: soil management and ecosystem development
    • L. Batty (Ed.), Cambridge: Cambridge University Press
    • Tibbett M (2009) Large-scale mine site restoration of Australian eucalypt forests after bauxite mining: soil management and ecosystem development. In: Batty L (ed) Ecology of industrial pollution: remediation, restoration and preservation. Cambridge University Press, Cambridge.
    • (2009) Ecology of Industrial Pollution: Remediation, Restoration and Preservation
    • Tibbett, M.1
  • 52
    • 77956844644 scopus 로고
    • Species abundance patterns and community structure
    • Tokeshi M (1993) Species abundance patterns and community structure. Adv Ecol Res 24: 112-186.
    • (1993) Adv Ecol Res , vol.24 , pp. 112-186
    • Tokeshi, M.1
  • 53
    • 0003725622 scopus 로고
    • US Environmental Protection Agency (USEPA), Cincinnati: Environ Monit Support Lab
    • US Environmental Protection Agency (USEPA) (1993) Methods for chemical analysis of water and wastes. Environ Monit Support Lab, Cincinnati.
    • (1993) Methods for Chemical Analysis of Water and Wastes
  • 54
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR (2007) Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4
  • 55
    • 0034233656 scopus 로고    scopus 로고
    • The effects of phosphorus loading on organic nitrogen mineralization of soils and detritus along a nutrient gradient in the northern Everglades, Florida
    • White JR, Reddy KR (2000) The effects of phosphorus loading on organic nitrogen mineralization of soils and detritus along a nutrient gradient in the northern Everglades, Florida. Soil Sci Soc of Am J 64: 1525-1534.
    • (2000) Soil Sci Soc of Am J , vol.64 , pp. 1525-1534
    • White, J.R.1    Reddy, K.R.2


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