메뉴 건너뛰기




Volumn 164, Issue 1, 2009, Pages 59-70

Molecular phylogenetic diversity of bacteria associated with soil of the savanna-like Cerrado vegetation

Author keywords

16S ribosomal RNA; Microbial diversity; Soil bacterial community

Indexed keywords

AGRICULTURE; BACTERIOLOGY; NUCLEIC ACIDS; RNA; VEGETATION;

EID: 58149333225     PISSN: 09445013     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.micres.2006.12.001     Document Type: Article
Times cited : (45)

References (51)
  • 4
    • 0030860238 scopus 로고    scopus 로고
    • Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation
    • Borneman J., and Triplett E.W. Molecular microbial diversity in soils from eastern Amazonia: evidence for unusual microorganisms and microbial population shifts associated with deforestation. Appl Environ Microbiol 63 (1997) 2647-2653
    • (1997) Appl Environ Microbiol , vol.63 , pp. 2647-2653
    • Borneman, J.1    Triplett, E.W.2
  • 6
    • 0036269049 scopus 로고    scopus 로고
    • Empirical and theoretical bacterial diversity in four Arizona soils
    • Dunbar J., Barns S.M., Ticknor L.O., and Kuske C.R. Empirical and theoretical bacterial diversity in four Arizona soils. Appl Environ Microbiol 68 (2002) 3035-3045
    • (2002) Appl Environ Microbiol , vol.68 , pp. 3035-3045
    • Dunbar, J.1    Barns, S.M.2    Ticknor, L.O.3    Kuske, C.R.4
  • 7
    • 3042666256 scopus 로고    scopus 로고
    • MUSCLE: multiple sequence alignment with high accuracy and high throughput
    • Edgar R.C. MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32 (2004) 1792-1797
    • (2004) Nucleic Acids Res , vol.32 , pp. 1792-1797
    • Edgar, R.C.1
  • 8
    • 0000122573 scopus 로고
    • PHYLIP-Phylogeny Inference Package (version 3.2)
    • Felsenstein J. PHYLIP-Phylogeny Inference Package (version 3.2). Cladistics 5 (1989) 164-166
    • (1989) Cladistics , vol.5 , pp. 164-166
    • Felsenstein, J.1
  • 9
    • 28944434614 scopus 로고    scopus 로고
    • Genome phylogenies indicate a meaningful {alpha}-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales
    • Fitzpatrick D.A., Creevey C.J., and McInerney J.O. Genome phylogenies indicate a meaningful {alpha}-proteobacterial phylogeny and support a grouping of the mitochondria with the Rickettsiales. Mol Biol Evol 23 (2006) 74-85
    • (2006) Mol Biol Evol , vol.23 , pp. 74-85
    • Fitzpatrick, D.A.1    Creevey, C.J.2    McInerney, J.O.3
  • 10
    • 27144551296 scopus 로고    scopus 로고
    • Intracellular compartmentation in planctomycetes
    • Fuerst J.A. Intracellular compartmentation in planctomycetes. Annu Rev Microbiol 59 (2005) 299-328
    • (2005) Annu Rev Microbiol , vol.59 , pp. 299-328
    • Fuerst, J.A.1
  • 11
    • 0025823615 scopus 로고
    • Membrane-bounded nucleoid in the eubacterium Gemmatata obscuriglobus
    • Fuerst J.A., and Webb R.I. Membrane-bounded nucleoid in the eubacterium Gemmatata obscuriglobus. Proc Natl Acad Sci USA 88 (1991) 8184-8188
    • (1991) Proc Natl Acad Sci USA , vol.88 , pp. 8184-8188
    • Fuerst, J.A.1    Webb, R.I.2
  • 13
    • 0035073503 scopus 로고    scopus 로고
    • Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi
    • Gomes R.C., Semedo L.T., Soares R.M., Linhares L.F., Ulhoa C.J., Alviano C.S., et al. Purification of a thermostable endochitinase from Streptomyces RC1071 isolated from a cerrado soil and its antagonism against phytopathogenic fungi. J Appl Microbiol 90 (2001) 653-661
    • (2001) J Appl Microbiol , vol.90 , pp. 653-661
    • Gomes, R.C.1    Semedo, L.T.2    Soares, R.M.3    Linhares, L.F.4    Ulhoa, C.J.5    Alviano, C.S.6
  • 14
    • 0033866961 scopus 로고    scopus 로고
    • Importance of habitat structure to the arthropod food-web in Douglas-fir canopies
    • Halaj J., Ross D.W., and Moldenke A.R. Importance of habitat structure to the arthropod food-web in Douglas-fir canopies. Oikos 90 (2000) 139-152
    • (2000) Oikos , vol.90 , pp. 139-152
    • Halaj, J.1    Ross, D.W.2    Moldenke, A.R.3
  • 15
    • 5044240973 scopus 로고    scopus 로고
    • Bellerophon: a program to detect chimeric sequences in multiple sequence alignments
    • Huber T., Faulkner G., and Hugenholtz P. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20 (2004) 2317-2319
    • (2004) Bioinformatics , vol.20 , pp. 2317-2319
    • Huber, T.1    Faulkner, G.2    Hugenholtz, P.3
  • 16
    • 0035487318 scopus 로고    scopus 로고
    • Counting the uncountable: statistical approaches to estimating microbial diversity
    • Hughes J.B., Hellmann J.J., Ricketts T.H., and Bohannan B.J. Counting the uncountable: statistical approaches to estimating microbial diversity. Appl Environ Microbiol 67 (2001) 4399-4406
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4399-4406
    • Hughes, J.B.1    Hellmann, J.J.2    Ricketts, T.H.3    Bohannan, B.J.4
  • 17
    • 0017182344 scopus 로고
    • Comparative aspects of development and differentiation in actinomycetes
    • Kalakoutskii L.V., and Agre N.S. Comparative aspects of development and differentiation in actinomycetes. Bacteriol Rev 40 (1976) 469-524
    • (1976) Bacteriol Rev , vol.40 , pp. 469-524
    • Kalakoutskii, L.V.1    Agre, N.S.2
  • 18
    • 0030868433 scopus 로고    scopus 로고
    • Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions
    • Kuske C.R., Barns S.M., and Busch J.D. Diverse uncultivated bacterial groups from soils of the arid southwestern United States that are present in many geographic regions. Appl Environ Microbiol 63 (1997) 3614-3621
    • (1997) Appl Environ Microbiol , vol.63 , pp. 3614-3621
    • Kuske, C.R.1    Barns, S.M.2    Busch, J.D.3
  • 19
    • 0033832931 scopus 로고    scopus 로고
    • Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA
    • Macrae A., Rimmer D.L., and O'Donnell A.G. Novel bacterial diversity recovered from the rhizosphere of oilseed rape (Brassica napus) determined by the analysis of 16S ribosomal DNA. Antonie Van Leeuwenhoek 78 (2000) 13-21
    • (2000) Antonie Van Leeuwenhoek , vol.78 , pp. 13-21
    • Macrae, A.1    Rimmer, D.L.2    O'Donnell, A.G.3
  • 22
    • 27144533225 scopus 로고    scopus 로고
    • The forgotten ecosystem
    • Marris E. The forgotten ecosystem. Nature 437 (2005) 944-945
    • (2005) Nature , vol.437 , pp. 944-945
    • Marris, E.1
  • 24
    • 0032916067 scopus 로고    scopus 로고
    • Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures
    • McCaig A.E., Glover L.A., and Prosser J.I. Molecular analysis of bacterial community structure and diversity in unimproved and improved upland grass pastures. Appl Environ Microbiol 65 (1999) 1721-1730
    • (1999) Appl Environ Microbiol , vol.65 , pp. 1721-1730
    • McCaig, A.E.1    Glover, L.A.2    Prosser, J.I.3
  • 25
    • 27744456466 scopus 로고    scopus 로고
    • Production and partial characterization of extracellular proteinases from Streptomyces malaysiensis, isolated from a Brazilian cerrado soil
    • Nascimento R.P., d'Avila-Levy C.M., Souza R.F., Branquinha M.H., Bon E.P., Pereira Jr. N., et al. Production and partial characterization of extracellular proteinases from Streptomyces malaysiensis, isolated from a Brazilian cerrado soil. Arch Microbiol 184 (2005) 194-198
    • (2005) Arch Microbiol , vol.184 , pp. 194-198
    • Nascimento, R.P.1    d'Avila-Levy, C.M.2    Souza, R.F.3    Branquinha, M.H.4    Bon, E.P.5    Pereira Jr., N.6
  • 27
    • 0030203863 scopus 로고    scopus 로고
    • TreeView: an application to display phylogenetic trees on personal computers
    • Page R.D. TreeView: an application to display phylogenetic trees on personal computers. Comput Appl Biosci 12 (1996) 357-358
    • (1996) Comput Appl Biosci , vol.12 , pp. 357-358
    • Page, R.D.1
  • 29
  • 30
    • 0345817553 scopus 로고    scopus 로고
    • Purification and partial characterization of an extracellular serine-proteinase of Streptomyces cyaneus isolated from Brazilian cerrado soil
    • Petinate S.D., Branquinha M.H., Coelho R.R., Vermelho A.B., and Giovanni-De-Simone S. Purification and partial characterization of an extracellular serine-proteinase of Streptomyces cyaneus isolated from Brazilian cerrado soil. J Appl Microbiol 87 (1999) 557-563
    • (1999) J Appl Microbiol , vol.87 , pp. 557-563
    • Petinate, S.D.1    Branquinha, M.H.2    Coelho, R.R.3    Vermelho, A.B.4    Giovanni-De-Simone, S.5
  • 31
    • 33745886995 scopus 로고    scopus 로고
    • Effects of different treatments of pastures reformation on soil trace gas emissions in the cerrados of central Brazil
    • Pinto A.S., Bustamante M.M.C., Kisselle K., Brossard M., Zepp R., Burke R., et al. Effects of different treatments of pastures reformation on soil trace gas emissions in the cerrados of central Brazil. Earth Interact 10 (2006) 1-26
    • (2006) Earth Interact , vol.10 , pp. 1-26
    • Pinto, A.S.1    Bustamante, M.M.C.2    Kisselle, K.3    Brossard, M.4    Zepp, R.5    Burke, R.6
  • 32
    • 0042126088 scopus 로고    scopus 로고
    • Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics
    • Quaiser A., Ochsenreiter T., Lanz C., Schuster S.C., Treusch A.H., Eck J., et al. Acidobacteria form a coherent but highly diverse group within the bacterial domain: evidence from environmental genomics. Mol Microbiol 50 (2003) 563-575
    • (2003) Mol Microbiol , vol.50 , pp. 563-575
    • Quaiser, A.1    Ochsenreiter, T.2    Lanz, C.3    Schuster, S.C.4    Treusch, A.H.5    Eck, J.6
  • 34
    • 84930051850 scopus 로고    scopus 로고
    • Resende JCF. A ciclagem de nutrientes em áreas de Cerrado e a influência de queimadas controladas. Doctorate thesis, Departamento de Ecologia, Universidade de Brasília, Brasília, Brasil, 2001, 121p.
    • Resende JCF. A ciclagem de nutrientes em áreas de Cerrado e a influência de queimadas controladas. Doctorate thesis, Departamento de Ecologia, Universidade de Brasília, Brasília, Brasil, 2001, 121p.
  • 35
    • 0038208336 scopus 로고    scopus 로고
    • Tree heterogeneity, resource availability, and larger scale processes regulating arboreal ant species richness
    • Ribas C.R., Schoereder J.H., Pic M., and Soares S.M. Tree heterogeneity, resource availability, and larger scale processes regulating arboreal ant species richness. Austral Ecol 28 (2003) 305-314
    • (2003) Austral Ecol , vol.28 , pp. 305-314
    • Ribas, C.R.1    Schoereder, J.H.2    Pic, M.3    Soares, S.M.4
  • 36
    • 18744382447 scopus 로고    scopus 로고
    • Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys
    • Sait M., Hugenholtz P., and Janssen P.H. Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys. Environ Microbiol 4 (2002) 654-666
    • (2002) Environ Microbiol , vol.4 , pp. 654-666
    • Sait, M.1    Hugenholtz, P.2    Janssen, P.H.3
  • 37
    • 25144454600 scopus 로고    scopus 로고
    • Genome reduction in the alpha-Proteobacteria
    • Sallstrom B., and Andersson S.G. Genome reduction in the alpha-Proteobacteria. Curr Opin Microbiol 8 (2005) 579-585
    • (2005) Curr Opin Microbiol , vol.8 , pp. 579-585
    • Sallstrom, B.1    Andersson, S.G.2
  • 39
    • 15444362001 scopus 로고    scopus 로고
    • Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness
    • Schloss P.D., and Handelsman J. Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71 (2005) 1501-1506
    • (2005) Appl Environ Microbiol , vol.71 , pp. 1501-1506
    • Schloss, P.D.1    Handelsman, J.2
  • 40
    • 4644275463 scopus 로고    scopus 로고
    • Integration of microbial ecology and statistics: a test to compare gene libraries
    • Schloss P.D., Larget B.R., and Handelsman J. Integration of microbial ecology and statistics: a test to compare gene libraries. Appl Environ Microbiol 70 (2004) 5485-5492
    • (2004) Appl Environ Microbiol , vol.70 , pp. 5485-5492
    • Schloss, P.D.1    Larget, B.R.2    Handelsman, J.3
  • 41
    • 0031764376 scopus 로고    scopus 로고
    • A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis
    • Schwieger F., and Tebbe C.C. A new approach to utilize PCR-single-strand-conformation polymorphism for 16S rRNA gene-based microbial community analysis. Appl Environ Microbiol 64 (1998) 4870-4876
    • (1998) Appl Environ Microbiol , vol.64 , pp. 4870-4876
    • Schwieger, F.1    Tebbe, C.C.2
  • 42
    • 0035463837 scopus 로고    scopus 로고
    • Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples
    • Singleton D.R., Furlong M.A., Rathbun S.L., and Whitman W.B. Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples. Appl Environ Microbiol 67 (2001) 4374-4376
    • (2001) Appl Environ Microbiol , vol.67 , pp. 4374-4376
    • Singleton, D.R.1    Furlong, M.A.2    Rathbun, S.L.3    Whitman, W.B.4
  • 43
    • 0026597527 scopus 로고
    • Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction
    • Tsai Y.L., and Olson B.H. Detection of low numbers of bacterial cells in soils and sediments by polymerase chain reaction. Appl Environ Microbiol 58 (1992) 754-757
    • (1992) Appl Environ Microbiol , vol.58 , pp. 754-757
    • Tsai, Y.L.1    Olson, B.H.2
  • 45
    • 4444327144 scopus 로고    scopus 로고
    • Soil fluxes of CO2, CO, NO and N2O from an active old-pasture and from native savanna in Central Brazil
    • Varella R.F., Bustamante M.M.C., Pinto A.S., Kisselle K.W., Santos R.V., Burke R., et al. Soil fluxes of CO2, CO, NO and N2O from an active old-pasture and from native savanna in Central Brazil. Ecol Appl 14 4 (2004) S221-S231
    • (2004) Ecol Appl , vol.14 , Issue.4
    • Varella, R.F.1    Bustamante, M.M.C.2    Pinto, A.S.3    Kisselle, K.W.4    Santos, R.V.5    Burke, R.6
  • 47
    • 0033936566 scopus 로고    scopus 로고
    • Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil
    • von der Weid I., Paiva E., Nobrega A., van Elsas J.D., and Seldin L. Diversity of Paenibacillus polymyxa strains isolated from the rhizosphere of maize planted in Cerrado soil. Res Microbiol 151 (2000) 369-381
    • (2000) Res Microbiol , vol.151 , pp. 369-381
    • von der Weid, I.1    Paiva, E.2    Nobrega, A.3    van Elsas, J.D.4    Seldin, L.5
  • 48
    • 0036827428 scopus 로고    scopus 로고
    • Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil
    • von der Weid I., Duarte G.F., van Elsas J.D., and Seldin L. Paenibacillus brasilensis sp. nov., a novel nitrogen-fixing species isolated from the maize rhizosphere in Brazil. Int J Syst Evol Microbiol 52 (2002) 2147-2153
    • (2002) Int J Syst Evol Microbiol , vol.52 , pp. 2147-2153
    • von der Weid, I.1    Duarte, G.F.2    van Elsas, J.D.3    Seldin, L.4
  • 49
    • 0036135250 scopus 로고    scopus 로고
    • Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia oxidizer populations
    • Webster G., Embley T.M., and Prosser J.I. Grassland management regimens reduce small-scale heterogeneity and species diversity of beta-proteobacterial ammonia oxidizer populations. Appl Environ Microbiol 68 (2002) 20-30
    • (2002) Appl Environ Microbiol , vol.68 , pp. 20-30
    • Webster, G.1    Embley, T.M.2    Prosser, J.I.3
  • 50
    • 18444404637 scopus 로고    scopus 로고
    • Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire
    • Yeager C.M., Northup D.E., Grow C.C., Barns S.M., and Kuske C.R. Changes in nitrogen-fixing and ammonia-oxidizing bacterial communities in soil of a mixed conifer forest after wildfire. Appl Environ Microbiol 71 (2005) 2713-2722
    • (2005) Appl Environ Microbiol , vol.71 , pp. 2713-2722
    • Yeager, C.M.1    Northup, D.E.2    Grow, C.C.3    Barns, S.M.4    Kuske, C.R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.