Detailed Transcriptome Description of the Neglected Cestode Taenia multiceps

PLoS ONE

Volumn 7, Issue 9, 2012, Pages

  Wu, Xuhang ^a   Fu, Yan ^a   Yang, Deying ^a   Zhang, Runhui ^a   Zheng, Wanpeng ^a   Nie, Huaming ^a   Xie, Yue ^a   Yan, Ning ^a   Hao, Guiying ^a   Gu, Xiaobin ^a   Wang, Shuxian ^a   Peng, Xuerong ^a   Yang, Guangyou ^a  

^a SICHUAN AGRICULTURAL UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

TRANSCRIPTOME;

ANCYLOSTOMA CANINUM; ARTICLE; CONTROLLED STUDY; ECHINOCOCCUS GRANULOSUS; ECHINOCOCCUS MULTILOCULARIS; GENE IDENTIFICATION; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; GENOME ANALYSIS; HOST PARASITE INTERACTION; MOLECULAR DYNAMICS; NONHUMAN; NUCLEOTIDE SEQUENCE; PARASITE IDENTIFICATION; PARASITE SURVIVAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA SEQUENCE; SEQUENCE ANALYSIS; SPECIES COMPARISON; TAENIA; TAENIA MULTICEPS; TAENIA PISIFORMIS; TAENIA SOLIUM; TRICHINELLA SPIRALIS;

ANIMALS; COMPUTATIONAL BIOLOGY; DATABASES, GENETIC; DATABASES, PROTEIN; DNA, COMPLEMENTARY; DOGS; ECHINOCOCCUS; EXPRESSED SEQUENCE TAGS; GOATS; MODELS, GENETIC; PARASITES; PHYLOGENY; RNA; SEQUENCE ANALYSIS, DNA; TAENIA; TRANSCRIPTOME;

ANCYLOSTOMA CANINUM; ASCARIS SUUM; CESTODA; OVIS ARIES; TAENIA; TAENIA MULTICEPS; TAENIA PISIFORMIS; TAENIA SOLIUM; TAENIIDAE; TRICHINELLA SPIRALIS;

EID: 84866664484     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0045830     Document Type: Article

References (62)

1. Gauci C, Vural G, Öncel T, Varcasia A, Damian V, et al. (2008) Vaccination with recombinant oncosphere antigens reduces the susceptibility of sheep to infection with Taenia multiceps. International journal for parasitology 38: 1041-1050.
2. Benifla M, Barrelly R, Shelef I, El-On J, Cohen A, et al. (2007) Huge hemispheric intraparenchymal cyst caused by Taenia multiceps in a child. Journal of Neurosurgery: Pediatrics 107: 511-514.
3. Edwards GT, Herbert IV, (1982) Observations on the course of Taenia multiceps infections in sheep: clinical signs and post-mortem findings. Br Vet J 138: 489-500.
4. Skerritt GC (1991) Coenurosis Diseases of Sheep. Blackwell Scientific Publication,Oxford.
5. Varcasia A, Tosciri G, Coccone G, Pipia A, Garippa G, et al. (2009) Preliminary field trial of a vaccine against coenurosis caused by Taenia multiceps. Vet Parasitol 162: 285-289.
6. Sharma D, Chauhan P, (2006) Coenurosis status in Afro-Asian region: a review. Small Ruminant Research 64: 197-202.
7. El-On J, Shelef I, Cagnano E, Benifla M, (2008) Taenia multiceps: a rare human cestode infection in Israel. Veterinaria Italiana 44: 621-631.
8. Ing MB, Schantz PM, Turner JA (1998) Human coenurosis in North America: case reports and review. Clinical infectious diseases: 519-523.
9. Benger A, Rennie RP, Roberts JT, Thornley JH, Scholten T, (1981) A human coenurus infection in Canada. Am J Trop Med Hyg 30: 638-644.
10. Wilson V, Wayte D, Addae R, (1972) Human coenurosis-The first reported case from Ghana. Transactions of the Royal Society of Tropical Medicine and Hygiene 66: 611-623.
11. Mahadevan A, Dwarakanath S, Pai S, Kovoor J, Radhesh S, et al. (2011) Cerebral coenurosis mimicking hydatid disease-report of two cases from South India. Clinical neuropathology 30: 28.
12. Craig PS, McManus DP, Lightowlers MW, Chabalgoity JA, Garcia HH, et al. (2007) Prevention and control of cystic echinococcosis. The Lancet infectious diseases 7: 385-394.
13. Abo-Shehada MN, Jebreen E, Arab B, Mukbel R, Torgerson PR, (2002) Prevalence of Taenia multiceps in sheep in northern Jordan. Preventive veterinary medicine 55: 201-207.
14. Achenef M, Markos T, Feseha G, Hibret A, Tembely S, (1999) Coenurus cerebralis infection in Ethiopian highland sheep: incidence and observations on pathogenesis and clinical signs. Tropical Animal Health and Production 31: 15-24.
15. Bussell K, Kinder A, Scott P, (1997) Posterior paralysis in a lamb caused by a Coeneurus cerebralis cyst in the lumbar spinal cord. Veterinary record 140: 560.
16. Doherty ML, McAllister H, Healy A, (1989) Ultrasound as an aid to Coenurus cerebralis cyst localisation in a lamb. Vet Rec 124: 591.
17. Euzéby J (1966) Les Maladies vermineuses des animaux domestiques et leurs incidences sur la pathologie humaine: Maladies dues aux plathelminthes: Vigot fréres.[In French].
18. Herbert IV, Edwards GT, Willis JM, (1984) Some host factors which influence the epidemiology of Taenia multiceps infections in sheep. Ann Trop Med Parasitol 78: 243-248.
19. Scala A, Cancedda GM, Varcasia A, Ligios C, Garippa G, et al. (2007) A survey of Taenia multiceps coenurosis in Sardinian sheep. Vet Parasitol 143: 294-298.
20. Yoshiro T, Momotani E, (1988) A case of bovine coenurosis (Coenurus cerebralis) in Japan. Nippon Juigaku Zasshi 50: 433-438.
21. Jia WZ, Yan HB, Guo AJ, Zhu XQ, Wang YC, et al. (2010) Complete mitochondrial genomes of Taenia multiceps, T. hydatigena and T. pisiformis: additional molecular markers for a tapeworm genus of human and animal health significance. BMC Genomics 11: 447.
22. Bentley DR, Balasubramanian S, Swerdlow HP, Smith GP, Milton J, et al. (2008) Accurate whole human genome sequencing using reversible terminator chemistry. Nature 456: 53-59.
23. Harris TD, Buzby PR, Babcock H, Beer E, Bowers J, et al. (2008) Single-molecule DNA sequencing of a viral genome. Science 320: 106.
24. Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, et al. (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437: 376-380.
25. Pandey V, Nutter RC, Prediger E (2008) Applied Biosystems SOLiD™ System: Ligation-Based Sequencing. Next Generation Genome Sequencing: 29-42.
26. Grabherr MG, Haas BJ, Yassour M, Levin JZ, Thompson DA, et al. (2011) Full-length transcriptome assembly from RNA-Seq data without a reference genome. Nature biotechnology 29: 644-652.
27. Wheat CW, Vogel H, (2011) Transcriptome sequencing goals, assembly, and assessment. Methods Mol Biol 772: 129-144.
28. Almeida CR, Stoco PH, Wagner G, Sincero TCM, Rotava G, et al. (2009) Transcriptome analysis of Taenia solium cysticerci using Open Reading Frame ESTs (ORESTES). Parasites & vectors 2: 35.
29. Lundström J, Salazar-Anton F, Sherwood E, Andersson B, Lindh J, (2010) Analyses of an expressed sequence tag library from Taenia solium, Cysticerca. PLoS neglected tropical diseases 4: e919.
30. Yang D, Fu Y, Wu X, Xie Y, Nie H, et al. (2012) Annotation of the transcriptome from Taenia pisiformis and its comparative analysis with three Taeniidae species. PLoS One 7: e32283.
31. Olson P, Zarowiecki M, Kiss F, Brehm K (2011) Cestode genomics-progress and prospects for advancing basic and applied aspects of flatworm biology. Parasite immunology. In press.
32. Cantacessi C, Campbell B, Young N, Jex A, Hall R, et al. (2010) Differences in transcription between free-living and CO2-activated third-stage larvae of Haemonchus contortus. BMC Genomics 11: 266.
33. Cantacessi C, Mitreva M, Campbell BE, Hall RS, Young ND, et al. (2010) First transcriptomic analysis of the economically important parasitic nematode, Trichostrongylus colubriformis, using a next-generation sequencing approach. Infection, Genetics and Evolution 10: 1199-1207.
34. Cantacessi C, Mitreva M, Jex AR, Young ND, Campbell BE, et al. (2010) Massively parallel sequencing and analysis of the Necator americanus transcriptome. PLoS neglected tropical diseases 4: e684.
35. Cantacessi C, Young ND, Nejsum P, Jex AR, Campbell BE, et al. (2011) The transcriptome of Trichuris suis-first molecular insights into a parasite with curative properties for key immune diseases of humans. PLoS One 6: e23590.
36. Ma X, Zhu Y, Li C, Shang Y, Meng F, et al. (2011) Comparative transcriptome sequencing of germline and somatic tissues of the Ascaris suum gonad. BMC Genomics 12: 481.
37. Moreno Y, Gros PP, Tam M, Segura M, Valanparambil R, et al. (2011) Proteomic analysis of excretory-secretory products of Heligmosomoides polygyrus assessed with next-generation sequencing transcriptomic information. PLoS neglected tropical diseases 5: e1370.
38. Wang Z, Abubucker S, Martin J, Wilson R, Hawdon J, et al. (2010) Characterizing Ancylostoma caninum transcriptome and exploring nematode parasitic adaptation. BMC Genomics 11: 307.
39. Almeida GT, Amaral MS, Beckedorff FCF, Kitajima JP, DeMarco R, et al. (2011) Exploring the Schistosoma mansoni adult male transcriptome using RNA-seq. Experimental Parasitology. In press.
40. Young ND, Campbell BE, Hall RS, Jex AR, Cantacessi C, et al. (2010) Unlocking the transcriptomes of two carcinogenic parasites, Clonorchis sinensis and Opisthorchis viverrini. PLoS neglected tropical diseases 4: e719.
41. Young ND, Hall RS, Jex AR, Cantacessi C, Gasser RB, (2010) Elucidating the transcriptome of Fasciola hepatica-a key to fundamental and biotechnological discoveries for a neglected parasite. Biotechnology advances 28: 222-231.
42. Young ND, Jex AR, Cantacessi C, Hall RS, Campbell BE, et al. (2011) A portrait of the transcriptome of the neglected trematode, Fasciola gigantica-Biological and biotechnological implications. PLoS neglected tropical diseases 5: e1004.
43. Hou R, Bao Z, Wang S, Su H, Li Y, et al. (2011) Transcriptome Sequencing and De Novo Analysis for Yesso Scallop (Patinopecten yessoensis) Using 454 GS FLX. PLoS One 6: e21560.
44. Shi CY, Yang H, Wei CL, Yu O, Zhang ZZ, et al. (2011) Deep sequencing of the Camellia sinensis transcriptome revealed candidate genes for major metabolic pathways of tea-specific compounds. BMC Genomics 12: 131.
45. Wang XW, Luan JB, Li JM, Bao YY, Zhang CX, et al. (2010) De novo characterization of a whitefly transcriptome and analysis of its gene expression during development. BMC Genomics 11: 400.
46. Bonizzoni M, Dunn WA, Campbell C, Olson K, Dimon M, et al. (2011) RNA-seq analyses of blood-induced changes in gene expression in the mosquito vector species, Aedes aegypti. BMC Genomics 12: 82.
47. Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA, (2010) Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery. BMC Genomics 11: 180.
48. Riddiford N, Olson PD (2011) Wnt gene loss in flatworms. Development Genes and Evolution: 1-11.
49. Li G, Xie M (2007) Advanced parasitology. China Higher Education Press: 109.
50. Prasad SB, Arjun J, Verma AK, (2012) Homology modeling of phosphoenolpyruvate carboxykinase of Ascaris suum. Journal of Pharmacy Research 5(2): 1248-1255.
51. J K, M N, T Y, M O, U S, et al. (2011) Phylogenetic relationships within Echinococcus and Taenia tapeworms (Cestoda: Taeniidae): an inference from nuclear protein-coding genes. Mol Phylogenet Evol: 638.
52. Tendler M, Brito CA, Vilar MM, Serra-Freire N, Diogo CM, et al. (1996) A Schistosoma mansoni fatty acid-binding protein, Sm14, is the potential basis of a dual-purpose anti-helminth vaccine. Proceedings of the National Academy of Sciences 93: 269.
53. Pan Q, Tang L (2004) Molecular parasitology. Shanghai Scientific and Technical Publishers: 353.
54. Pertea G, Huang X, Liang F, Antonescu V, Sultana R, et al. (2003) TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets. Bioinformatics 19: 651-652.
55. Mortazavi A, Williams BA, McCue K, Schaeffer L, Wold B, (2008) Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nature methods 5: 621-628.
56. Zdobnov EM, Apweiler R, (2001) InterProScan-an integration platform for the signature-recognition methods in InterPro. Bioinformatics 17: 847.
57. Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, et al. (2009) InterPro: the integrative protein signature database. Nucleic acids research 37: D211-D215.
58. Finn RD, Mistry J, Tate J, Coggill P, Heger A, et al. (2010) The Pfam protein families database. Nucleic acids research 38: D211.
59. Iseli C, Jongeneel CV, Bucher P (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences: 138-148.
60. Conesa A, Götz S, García-Gómez JM, Terol J, Talón M, et al. (2005) Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research. Bioinformatics 21: 3674-3676.
61. Ye J, Fang L, Zheng H, Zhang Y, Chen J, et al. (2006) WEGO: a web tool for plotting GO annotations. Nucleic acids research 34: W293-W297.
62. Mitreva M, Jasmer DP, Zarlenga DS, Wang Z, Abubucker S, et al. (2011) The draft genome of the parasitic nematode Trichinella spiralis. Nature genetics 43: 228-235.