메뉴 건너뛰기




Volumn 371, Issue 1, 2012, Pages 110-120

A cis-regulatory module upstream of deltaC regulated by Ntla and Tbx16 drives expression in the tailbud, presomitic mesoderm and somites

Author keywords

CRM; DeltaC; Ntla; T box transcription factors; Tbx16

Indexed keywords

LIGAND; PROTEIN DELTAC; T BOX TRANSCRIPTION FACTOR; TRANSCRIPTION FACTOR NO TAIL A; TRANSCRIPTION FACTOR TBX16; TRANSCRIPTION FACTOR TBX24; UNCLASSIFIED DRUG;

EID: 84866515106     PISSN: 00121606     EISSN: 1095564X     Source Type: Journal    
DOI: 10.1016/j.ydbio.2012.07.002     Document Type: Article
Times cited : (14)

References (60)
  • 1
    • 0036638027 scopus 로고    scopus 로고
    • The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate
    • Amacher S.L., Draper B.W., Summers B.R., Kimmel C.B. The zebrafish T-box genes no tail and spadetail are required for development of trunk and tail mesoderm and medial floor plate. Development 2002, 129:3311-3323.
    • (2002) Development , vol.129 , pp. 3311-3323
    • Amacher, S.L.1    Draper, B.W.2    Summers, B.R.3    Kimmel, C.B.4
  • 2
    • 27744436054 scopus 로고    scopus 로고
    • Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axis
    • Bisgrove B.W., Snarr B.S., Emrazian A., Yost H.J. Polaris and Polycystin-2 in dorsal forerunner cells and Kupffer's vesicle are required for specification of the zebrafish left-right axis. Dev. Biol. 2005, 287:274-288.
    • (2005) Dev. Biol. , vol.287 , pp. 274-288
    • Bisgrove, B.W.1    Snarr, B.S.2    Emrazian, A.3    Yost, H.J.4
  • 4
    • 70350743147 scopus 로고    scopus 로고
    • Expression of the oscillating gene her1 is directly regulated by Hairy/Enhancer of Split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock
    • Brend T., Holley S.A. Expression of the oscillating gene her1 is directly regulated by Hairy/Enhancer of Split, T-box, and suppressor of hairless proteins in the zebrafish segmentation clock. Dev. Dyn. 2009, 238:2745-2759.
    • (2009) Dev. Dyn. , vol.238 , pp. 2745-2759
    • Brend, T.1    Holley, S.A.2
  • 5
    • 58149279450 scopus 로고    scopus 로고
    • RNA profiling of FAC-sorted neurones from the developing zebrafish spinal cord.
    • Cerda G.A., Hargrave M., Lewis K.E. RNA profiling of FAC-sorted neurones from the developing zebrafish spinal cord. Dev. Dyn. 2009, 238(1):150-161.
    • (2009) Dev. Dyn. , vol.238 , Issue.1 , pp. 150-161
    • Cerda, G.A.1    Hargrave, M.2    Lewis, K.E.3
  • 6
    • 0030589712 scopus 로고    scopus 로고
    • Tbx6, a mouse T-box gene implicated in paraxial mesoderm formation at gastrulation
    • Chapman D.L., Agulnik I., Hancock S., Silver L.M., Papaioannou V.E. Tbx6, a mouse T-box gene implicated in paraxial mesoderm formation at gastrulation. Dev. Biol. 1996, 180:534-542.
    • (1996) Dev. Biol. , vol.180 , pp. 534-542
    • Chapman, D.L.1    Agulnik, I.2    Hancock, S.3    Silver, L.M.4    Papaioannou, V.E.5
  • 7
    • 0032510049 scopus 로고    scopus 로고
    • Three neural tubes in mouse embryos with mutations in the T-box gene Tbx6
    • Chapman D.L., Papaioannou V.E. Three neural tubes in mouse embryos with mutations in the T-box gene Tbx6. Nature 1998, 391:695-697.
    • (1998) Nature , vol.391 , pp. 695-697
    • Chapman, D.L.1    Papaioannou, V.E.2
  • 8
    • 0017122064 scopus 로고
    • A clock and wavefront model for control of the number of repeated structures during animal morphogenesis
    • Cooke J., Zeeman E.C. A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. J. Theor. Biol. 1976, 58:455-476.
    • (1976) J. Theor. Biol. , vol.58 , pp. 455-476
    • Cooke, J.1    Zeeman, E.C.2
  • 9
    • 0034908359 scopus 로고    scopus 로고
    • Morpholino phenocopies of sqt, oep, and ntl mutations
    • Feldman B., Stemple D.L. Morpholino phenocopies of sqt, oep, and ntl mutations. Genesis 2001, 30:175-177.
    • (2001) Genesis , vol.30 , pp. 175-177
    • Feldman, B.1    Stemple, D.L.2
  • 13
    • 34250316233 scopus 로고    scopus 로고
    • Setting the tempo in development: an investigation of the zebrafish somite clock mechanism
    • Giudicelli F., Ozbudak E.M., Wright G.J., Lewis J. Setting the tempo in development: an investigation of the zebrafish somite clock mechanism. PLoS Biol. 2007, 5:e150.
    • (2007) PLoS Biol. , vol.5
    • Giudicelli, F.1    Ozbudak, E.M.2    Wright, G.J.3    Lewis, J.4
  • 14
    • 77955801615 scopus 로고    scopus 로고
    • Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences
    • Goecks J., Nekrutenko A., Taylor J. Galaxy: a comprehensive approach for supporting accessible, reproducible, and transparent computational research in the life sciences. Genome Biol. 2010, 11:R86.
    • (2010) Genome Biol. , vol.11
    • Goecks, J.1    Nekrutenko, A.2    Taylor, J.3
  • 16
    • 0031692014 scopus 로고    scopus 로고
    • Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes
    • Griffin K.J.P., Amacher S.L., Kimmel C.B., Kimelman D. Molecular identification of spadetail: regulation of zebrafish trunk and tail mesoderm formation by T-box genes. Development 1998, 125:3379-3388.
    • (1998) Development , vol.125 , pp. 3379-3388
    • Griffin, K.J.P.1    Amacher, S.L.2    Kimmel, C.B.3    Kimelman, D.4
  • 17
    • 0032425547 scopus 로고    scopus 로고
    • Delta-Notch signalling and the patterning of sensory cell differentiation in the zebrafish ear: evidence from the mind bomb mutant
    • Haddon C., Jiang Y.J., Smithers L., Lewis J. Delta-Notch signalling and the patterning of sensory cell differentiation in the zebrafish ear: evidence from the mind bomb mutant. Development 1998, 125:4637-4644.
    • (1998) Development , vol.125 , pp. 4637-4644
    • Haddon, C.1    Jiang, Y.J.2    Smithers, L.3    Lewis, J.4
  • 18
    • 0027423420 scopus 로고
    • Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation
    • Halpern M.E., Ho R.K., Walker C., Kimmel C.B. Induction of muscle pioneers and floor plate is distinguished by the zebrafish no tail mutation. Cell 1993, 75:99-111.
    • (1993) Cell , vol.75 , pp. 99-111
    • Halpern, M.E.1    Ho, R.K.2    Walker, C.3    Kimmel, C.B.4
  • 19
    • 0027083090 scopus 로고
    • Cell movements and cell fate during zebrafish gastrulation
    • Ho R.K. Cell movements and cell fate during zebrafish gastrulation. Dev. Suppl. 1992, 65-73.
    • (1992) Dev. Suppl. , pp. 65-73
    • Ho, R.K.1
  • 20
    • 0025648760 scopus 로고
    • Cell-autonomous action of zebrafish spt-1 mutation in specific mesodermal precursors
    • Ho R.K., Kane D.A. Cell-autonomous action of zebrafish spt-1 mutation in specific mesodermal precursors. Nature 1990, 348:728-730.
    • (1990) Nature , vol.348 , pp. 728-730
    • Ho, R.K.1    Kane, D.A.2
  • 21
    • 0034234968 scopus 로고    scopus 로고
    • Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity
    • Holley S.A., Geisler R., Nusslein-Volhard C. Control of her1 expression during zebrafish somitogenesis by a delta-dependent oscillator and an independent wave-front activity. Genes. Dev. 2000, 14:1678-1690.
    • (2000) Genes. Dev. , vol.14 , pp. 1678-1690
    • Holley, S.A.1    Geisler, R.2    Nusslein-Volhard, C.3
  • 22
    • 0036332729 scopus 로고    scopus 로고
    • Her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis
    • Holley S.A., Julich D., Rauch G.J., Geisler R., Nusslein-Volhard C. her1 and the notch pathway function within the oscillator mechanism that regulates zebrafish somitogenesis. Development 2002, 129:1175-1183.
    • (2002) Development , vol.129 , pp. 1175-1183
    • Holley, S.A.1    Julich, D.2    Rauch, G.J.3    Geisler, R.4    Nusslein-Volhard, C.5
  • 25
    • 0031025860 scopus 로고    scopus 로고
    • The development of the posterior body in zebrafish
    • Kanki J.P., Ho R.K. The development of the posterior body in zebrafish. Development 1997, 124:881-893.
    • (1997) Development , vol.124 , pp. 881-893
    • Kanki, J.P.1    Ho, R.K.2
  • 26
    • 43249111060 scopus 로고    scopus 로고
    • Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators
    • Kawamura A., Koshida S., Takada S. Activator-to-repressor conversion of T-box transcription factors by the Ripply family of Groucho/TLE-associated mediators. Mol. Cell Biol. 2008, 28:3236-3244.
    • (2008) Mol. Cell Biol. , vol.28 , pp. 3236-3244
    • Kawamura, A.1    Koshida, S.2    Takada, S.3
  • 27
    • 0024978866 scopus 로고
    • A mutation that changes cell movement and cell fate in the zebrafish embryo
    • Kimmel C.B., Kane D.A., Walker C., Warga R.M., Rothman M.B. A mutation that changes cell movement and cell fate in the zebrafish embryo. Nature 1989, 337:358-362.
    • (1989) Nature , vol.337 , pp. 358-362
    • Kimmel, C.B.1    Kane, D.A.2    Walker, C.3    Warga, R.M.4    Rothman, M.B.5
  • 28
    • 0025270337 scopus 로고
    • Origin and organization of the zebrafish fate map
    • Kimmel C.B., Warga R.M., Schilling T.F. Origin and organization of the zebrafish fate map. Development 1990, 108:581-594.
    • (1990) Development , vol.108 , pp. 581-594
    • Kimmel, C.B.1    Warga, R.M.2    Schilling, T.F.3
  • 29
    • 0027282961 scopus 로고
    • The Brachyury gene encodes a novel DNA binding protein
    • Kispert A., Herrmann B.G. The Brachyury gene encodes a novel DNA binding protein. Embo J. 1993, 12:3211-3220.
    • (1993) Embo J. , vol.12 , pp. 3211-3220
    • Kispert, A.1    Herrmann, B.G.2
  • 30
    • 0028788846 scopus 로고
    • Efficient hormone-inducible protein function in Xenopus laevis
    • Kolm P.J., Sive H.L. Efficient hormone-inducible protein function in Xenopus laevis. Dev. Biol. 1995, 171:267-272.
    • (1995) Dev. Biol. , vol.171 , pp. 267-272
    • Kolm, P.J.1    Sive, H.L.2
  • 32
    • 62349130698 scopus 로고    scopus 로고
    • Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
    • Langmead B., Trapnell C., Pop M., Salzberg S.L. Ultrafast and memory-efficient alignment of short DNA sequences to the human genome. Genome Biol. 2009, 10:R25.
    • (2009) Genome Biol. , vol.10
    • Langmead, B.1    Trapnell, C.2    Pop, M.3    Salzberg, S.L.4
  • 33
    • 17644385076 scopus 로고    scopus 로고
    • Computational representation of developmental genetic regulatory networks
    • Longabaugh W.J., Davidson E.H., Bolouri H. Computational representation of developmental genetic regulatory networks. Dev. Biol. 2005, 283:1-16.
    • (2005) Dev. Biol. , vol.283 , pp. 1-16
    • Longabaugh, W.J.1    Davidson, E.H.2    Bolouri, H.3
  • 34
    • 34247863926 scopus 로고    scopus 로고
    • Priming, initiation and synchronization of the segmentation clock by deltaD and deltaC
    • Mara A., Schroeder J., Chalouni C., Holley S.A. Priming, initiation and synchronization of the segmentation clock by deltaD and deltaC. Nat. Cell Biol. 2007, 9:523-530.
    • (2007) Nat. Cell Biol. , vol.9 , pp. 523-530
    • Mara, A.1    Schroeder, J.2    Chalouni, C.3    Holley, S.A.4
  • 35
    • 46049114470 scopus 로고    scopus 로고
    • Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation
    • Martin B.L., Kimelman D. Regulation of canonical Wnt signaling by Brachyury is essential for posterior mesoderm formation. Dev. Cell 2008, 15:121-133.
    • (2008) Dev. Cell , vol.15 , pp. 121-133
    • Martin, B.L.1    Kimelman, D.2
  • 36
    • 78650209980 scopus 로고    scopus 로고
    • Brachyury establishes the embryonic mesodermal progenitor niche
    • Martin B.L., Kimelman D. Brachyury establishes the embryonic mesodermal progenitor niche. Genes Dev. 2010, 24:2778-2783.
    • (2010) Genes Dev. , vol.24 , pp. 2778-2783
    • Martin, B.L.1    Kimelman, D.2
  • 38
    • 1842374429 scopus 로고    scopus 로고
    • Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos
    • Muller F., Williams D.W., Kobolak J., Gauvry L., Goldspink G., Orban L., Maclean N. Activator effect of coinjected enhancers on the muscle-specific expression of promoters in zebrafish embryos. Mol. Reprod. Dev. 1997, 47:404-412.
    • (1997) Mol. Reprod. Dev. , vol.47 , pp. 404-412
    • Muller, F.1    Williams, D.W.2    Kobolak, J.3    Gauvry, L.4    Goldspink, G.5    Orban, L.6    Maclean, N.7
  • 39
    • 70349739736 scopus 로고    scopus 로고
    • The integrated genome browser: free software for distribution and exploration of genome-scale datasets
    • Nicol J.W., Helt G.A., Blanchard S.G., Raja A., Loraine A.E. The integrated genome browser: free software for distribution and exploration of genome-scale datasets. Bioinformatics 2009, 25:2730-2731.
    • (2009) Bioinformatics , vol.25 , pp. 2730-2731
    • Nicol, J.W.1    Helt, G.A.2    Blanchard, S.G.3    Raja, A.4    Loraine, A.E.5
  • 40
    • 0036613420 scopus 로고    scopus 로고
    • Tbx24, encoding a T-box protein, is mutated in the zebrafish somite-segmentation mutant fused somites
    • Nikaido M., Kawakami A., Sawada A., Furutani-Seiki M., Takeda H., Araki K. Tbx24, encoding a T-box protein, is mutated in the zebrafish somite-segmentation mutant fused somites. Nat. Genet. 2002, 31:195-199.
    • (2002) Nat. Genet. , vol.31 , pp. 195-199
    • Nikaido, M.1    Kawakami, A.2    Sawada, A.3    Furutani-Seiki, M.4    Takeda, H.5    Araki, K.6
  • 41
    • 0038115065 scopus 로고    scopus 로고
    • The segmentation clock: converting embryonic time into spatial pattern
    • Pourquie O. The segmentation clock: converting embryonic time into spatial pattern. Science 2003, 301:328-330.
    • (2003) Science , vol.301 , pp. 328-330
    • Pourquie, O.1
  • 42
    • 79955495446 scopus 로고    scopus 로고
    • Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires spadetail
    • Row R.H., Maitre J.L., Martin B.L., Stockinger P., Heisenberg C.P., Kimelman D. Completion of the epithelial to mesenchymal transition in zebrafish mesoderm requires spadetail. Dev. Biol. 2011, 354:102-110.
    • (2011) Dev. Biol. , vol.354 , pp. 102-110
    • Row, R.H.1    Maitre, J.L.2    Martin, B.L.3    Stockinger, P.4    Heisenberg, C.P.5    Kimelman, D.6
  • 43
    • 0027077930 scopus 로고
    • The protein product of the zebrafish homologue of the mouse T gene is expressed in nuclei of the germ ring and the notochord of the early embryo
    • Schulte-Merker S., Ho R.K., Herrmann B.G., Nusslein-Volhard C. The protein product of the zebrafish homologue of the mouse T gene is expressed in nuclei of the germ ring and the notochord of the early embryo. Development 1992, 116:1021-1032.
    • (1992) Development , vol.116 , pp. 1021-1032
    • Schulte-Merker, S.1    Ho, R.K.2    Herrmann, B.G.3    Nusslein-Volhard, C.4
  • 45
    • 0033990508 scopus 로고    scopus 로고
    • Sequence and embryonic expression of deltaC in the zebrafish
    • Smithers L., Haddon C., Jiang Y.J., Lewis J. Sequence and embryonic expression of deltaC in the zebrafish. Mech. Dev. 2000, 90:119-123.
    • (2000) Mech. Dev. , vol.90 , pp. 119-123
    • Smithers, L.1    Haddon, C.2    Jiang, Y.J.3    Lewis, J.4
  • 46
    • 0027453569 scopus 로고
    • Structure of the zebrafish snail1 gene and its expression in wildtype, spadetail and no tail embryos
    • Thisse C., Thisse B., Schilling T.F., Postlewait J.H. Structure of the zebrafish snail1 gene and its expression in wildtype, spadetail and no tail embryos. Development 1993, 119:1203-1215.
    • (1993) Development , vol.119 , pp. 1203-1215
    • Thisse, C.1    Thisse, B.2    Schilling, T.F.3    Postlewait, J.H.4
  • 47
    • 52749097035 scopus 로고    scopus 로고
    • Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules
    • Turatsinze J.V., Thomas-Chollier M., Defrance M., van Helden J. Using RSAT to scan genome sequences for transcription factor binding sites and cis-regulatory modules. Nat. Protoc. 2008, 3:1578-1588.
    • (2008) Nat. Protoc. , vol.3 , pp. 1578-1588
    • Turatsinze, J.V.1    Thomas-Chollier, M.2    Defrance, M.3    van Helden, J.4
  • 50
    • 46449094958 scopus 로고    scopus 로고
    • Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo. EMBO Rep.
    • von Hofsten, J., Elworthy, S., Gilchrist, M.J., Smith, J.C., Wardle, F.C., Ingham, P.W., 2008. Prdm1- and Sox6-mediated transcriptional repression specifies muscle fibre type in the zebrafish embryo. EMBO Rep.
    • (2008)
    • von Hofsten, J.1    Elworthy, S.2    Gilchrist, M.J.3    Smith, J.C.4    Wardle, F.C.5    Ingham, P.W.6
  • 52
    • 56049094776 scopus 로고    scopus 로고
    • Teasing out T-box targets in early mesoderm. Curr. Opin. Genet. Dev.
    • Wardle, F.C., Papaioannou, V.E., 2008. Teasing out T-box targets in early mesoderm. Curr. Opin. Genet. Dev.
    • (2008)
    • Wardle, F.C.1    Papaioannou, V.E.2
  • 54
    • 0038067841 scopus 로고    scopus 로고
    • Defective somite patterning in mouse embryos with reduced levels of Tbx6
    • White P.H., Farkas D.R., McFadden E.E., Chapman D.L. Defective somite patterning in mouse embryos with reduced levels of Tbx6. Development 2003, 130:1681-1690.
    • (2003) Development , vol.130 , pp. 1681-1690
    • White, P.H.1    Farkas, D.R.2    McFadden, E.E.3    Chapman, D.L.4
  • 58
    • 33644866845 scopus 로고    scopus 로고
    • Tbx6-mediated Notch signaling controls somite-specific Mesp2 expression. Proceedings of the National Academy of Sciences of the United States of America 103
    • Yasuhiko, Y., Haraguchi, S., Kitajima, S., Takahashi, Y., Kanno, J., Saga, Y., 2006. Tbx6-mediated Notch signaling controls somite-specific Mesp2 expression. Proceedings of the National Academy of Sciences of the United States of America 103, 3651-3656.
    • (2006)
    • Yasuhiko, Y.1    Haraguchi, S.2    Kitajima, S.3    Takahashi, Y.4    Kanno, J.5    Saga, Y.6
  • 59
    • 58149343855 scopus 로고    scopus 로고
    • Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2
    • Yasuhiko Y., Kitajima S., Takahashi Y., Oginuma M., Kagiwada H., Kanno J., Saga Y. Functional importance of evolutionally conserved Tbx6 binding sites in the presomitic mesoderm-specific enhancer of Mesp2. Development 2008, 135:3511-3519.
    • (2008) Development , vol.135 , pp. 3511-3519
    • Yasuhiko, Y.1    Kitajima, S.2    Takahashi, Y.3    Oginuma, M.4    Kagiwada, H.5    Kanno, J.6    Saga, Y.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.