-
2
-
-
33646907087
-
GroEL-GroES-mediated protein folding
-
DOI 10.1021/cr040435v
-
A.L. Horwich, G.W. Farr, and W.A. Fenton GroEL-GroES-mediated protein folding Chem. Rev. 106 2006 1917 1930 (Pubitemid 43792786)
-
(2006)
Chemical Reviews
, vol.106
, Issue.5
, pp. 1917-1930
-
-
Horwich, A.L.1
Farr, G.W.2
Fenton, W.A.3
-
3
-
-
0030870719
-
The crystal structure of the asymmetric GroEL-GroES-(ADP)7 chaperonin complex
-
DOI 10.1038/41944
-
7 chaperonin complex Nature 388 1997 741 750 (Pubitemid 27375147)
-
(1997)
Nature
, vol.388
, Issue.6644
, pp. 741-750
-
-
Xu, Z.1
Horwich, A.L.2
Sigler, P.B.3
-
4
-
-
0027943510
-
The crystal structure of the bacterial chaperonin GroEL at 2.8 Å
-
K. Braig, and Z. Otwinowski P.B. Sigler The crystal structure of the bacterial chaperonin GroEL at 2.8 Å Nature 371 1994 578 586
-
(1994)
Nature
, vol.371
, pp. 578-586
-
-
Braig, K.1
Otwinowski, Z.2
Sigler, P.B.3
-
5
-
-
0035966323
-
ATP-bound states of GroEL captured by cryo-electron microscopy
-
DOI 10.1016/S0092-8674(01)00617-1
-
N.A. Ranson, and G.W. Farr H.R. Saibil ATP-bound states of GroEL captured by cryo-electron microscopy Cell 107 2001 869 879 (Pubitemid 34084978)
-
(2001)
Cell
, vol.107
, Issue.7
, pp. 869-879
-
-
Ranson, N.A.1
Farr, G.W.2
Roseman, A.M.3
Gowen, B.4
Fenton, W.A.5
Horwich, A.L.6
Saibil, H.R.7
-
6
-
-
0032464019
-
GroEL/GroES: Structure and function of a two-stroke folding machine
-
DOI 10.1006/jsbi.1998.4060
-
Z. Xu, and P.B. Sigler GroEL/GroES: structure and function of a two-stroke folding machine J. Struct. Biol. 124 1998 129 141 (Pubitemid 29143055)
-
(1998)
Journal of Structural Biology
, vol.124
, Issue.2-3
, pp. 129-141
-
-
Xu, Z.1
Sigler, P.B.2
-
7
-
-
0030804446
-
Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL
-
DOI 10.1038/42047
-
H.S. Rye, and S.G. Burston A.L. Horwich Distinct actions of cis and trans ATP within the double ring of the chaperonin GroEL Nature 388 1997 792 798 (Pubitemid 27375160)
-
(1997)
Nature
, vol.388
, Issue.6644
, pp. 792-798
-
-
Rye, H.S.1
Burston, S.G.2
Fenton, W.A.3
Beechem, J.M.4
Xu, Z.5
Sigler, P.B.6
Horwich, A.L.7
-
8
-
-
0027933369
-
GroEL-mediated protein folding proceeds by multiple rounds of binding and release of nonnative forms
-
DOI 10.1016/0092-8674(94)90533-9
-
J.S. Weissman, and Y. Kashi A.L. Horwich GroEL-mediated protein folding proceeds by multiple rounds of binding and release of nonnative forms Cell 78 1994 693 702 (Pubitemid 24268591)
-
(1994)
Cell
, vol.78
, Issue.4
, pp. 693-702
-
-
Weissman, J.S.1
Kashi, Y.2
Fenton, W.A.3
Horwich, A.L.4
-
9
-
-
0030056969
-
Characterization of the active intermediate of a GroEL-GroES-mediated protein folding reaction
-
DOI 10.1016/S0092-8674(00)81293-3
-
J.S. Weissman, and H.S. Rye A.L. Horwich Characterization of the active intermediate of a GroEL-GroES-mediated protein folding reaction Cell 84 1996 481 490 (Pubitemid 26058572)
-
(1996)
Cell
, vol.84
, Issue.3
, pp. 481-490
-
-
Weissman, J.S.1
Rye, H.S.2
Fenton, W.A.3
Beechem, J.M.4
Horwich, A.L.5
-
10
-
-
0032478545
-
Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT
-
DOI 10.1016/S0092-8674(00)81152-6
-
L. Ditzel, and J. Löwe S. Steinbacher Crystal structure of the thermosome, the archaeal chaperonin and homolog of CCT Cell 93 1998 125 138 (Pubitemid 28173558)
-
(1998)
Cell
, vol.93
, Issue.1
, pp. 125-138
-
-
Ditzel, L.1
Lowe, J.2
Stock, D.3
Stetter, K.-O.4
Huber, H.5
Huber, R.6
Steinbacher, S.7
-
12
-
-
79961026866
-
The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins
-
C. Dekker, and S.M. Roe K.R. Willison The crystal structure of yeast CCT reveals intrinsic asymmetry of eukaryotic cytosolic chaperonins EMBO J. 30 2011 3078 3090
-
(2011)
EMBO J.
, vol.30
, pp. 3078-3090
-
-
Dekker, C.1
Roe, S.M.2
Willison, K.R.3
-
13
-
-
0030668929
-
Structure of the substrate binding domain of the thermosome, an archaeal group II chaperonin
-
DOI 10.1016/S0092-8674(00)80408-0
-
M. Klumpp, W. Baumeister, and L.O. Essen Structure of the substrate binding domain of the thermosome, an archaeal group II chaperonin Cell 91 1997 263 270 (Pubitemid 27456393)
-
(1997)
Cell
, vol.91
, Issue.2
, pp. 263-270
-
-
Klumpp, M.1
Baumeister, W.2
Essen, L.-O.3
-
14
-
-
0035983515
-
Crystal structure of the CCTγ apical domain: Implications for substrate binding to the eukaryotic cytosolic chaperonin
-
DOI 10.1016/S0022-2836(02)00190-0
-
G. Pappenberger, and J.A. Wilsher L.H. Pearl Crystal structure of the CCTγ apical domain: implications for substrate binding to the eukaryotic cytosolic chaperonin J. Mol. Biol. 318 2002 1367 1379 (Pubitemid 34754004)
-
(2002)
Journal of Molecular Biology
, vol.318
, Issue.5
, pp. 1367-1379
-
-
Pappenberger, G.1
Wilsher, J.A.2
Mark Roe, S.3
Counsell, D.J.4
Willison, K.R.5
Pearl, L.H.6
-
15
-
-
0025995773
-
Cooperativity in ATP hydrolysis by GroEL is increased by GroES
-
T.E. Gray, and A.R. Fersht Cooperativity in ATP hydrolysis by GroEL is increased by GroES FEBS Lett. 292 1991 254 258
-
(1991)
FEBS Lett.
, vol.292
, pp. 254-258
-
-
Gray, T.E.1
Fersht, A.R.2
-
16
-
-
0026649378
-
Positive cooperativity in the functioning of molecular chaperone GroEL
-
E.S. Bochkareva, and N.M. Lissin A.S. Girshovich Positive cooperativity in the functioning of molecular chaperone GroEL J. Biol. Chem. 267 1992 6796 6800
-
(1992)
J. Biol. Chem.
, vol.267
, pp. 6796-6800
-
-
Bochkareva, E.S.1
Lissin, N.M.2
Girshovich, A.S.3
-
17
-
-
16244380542
-
Cooperativity in the thermosome
-
DOI 10.1016/j.jmb.2005.01.066
-
M.G. Bigotti, and A.R. Clarke Cooperativity in the thermosome J. Mol. Biol. 348 2005 13 26 (Pubitemid 40461837)
-
(2005)
Journal of Molecular Biology
, vol.348
, Issue.1
, pp. 13-26
-
-
Bigotti, M.G.1
Clarke, A.R.2
-
18
-
-
0035100716
-
Nested allosteric interactions in the cytoplasmic chaperonin containing TCP-1
-
DOI 10.1110/ps.44401
-
G. Kafri, K.R. Willison, and A. Horovitz Nested allosteric interactions in the cytoplasmic chaperonin containing TCP-1 Protein Sci. 10 2001 445 449 (Pubitemid 32225664)
-
(2001)
Protein Science
, vol.10
, Issue.2
, pp. 445-449
-
-
Kafri, G.1
Willison, K.R.2
Horovitz, A.3
-
19
-
-
78651189765
-
On the nature of allosteric transitions: A plausible model
-
J. Monod, J. Wyman, and J.P. Changeux On the nature of allosteric transitions: a plausible model J. Mol. Biol. 12 1965 88 118
-
(1965)
J. Mol. Biol.
, vol.12
, pp. 88-118
-
-
Monod, J.1
Wyman, J.2
Changeux, J.P.3
-
20
-
-
0029004759
-
Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL
-
O. Yifrach, and A. Horovitz Nested cooperativity in the ATPase activity of the oligomeric chaperonin GroEL Biochemistry 34 1995 5303 5308
-
(1995)
Biochemistry
, vol.34
, pp. 5303-5308
-
-
Yifrach, O.1
Horovitz, A.2
-
22
-
-
0013863816
-
Comparison of experimental binding data and theoretical models in proteins containing subunits
-
D.E. Koshland Jr., G. Némethy, and D. Filmer Comparison of experimental binding data and theoretical models in proteins containing subunits Biochemistry 5 1966 365 385
-
(1966)
Biochemistry
, vol.5
, pp. 365-385
-
-
Koshland Jr., D.E.1
Némethy, G.2
Filmer, D.3
-
25
-
-
0034665864
-
A dynamic model for the allosteric mechanism of GroEL
-
J. Ma, and P.B. Sigler M. Karplus A dynamic model for the allosteric mechanism of GroEL J. Mol. Biol. 302 2000 303 313
-
(2000)
J. Mol. Biol.
, vol.302
, pp. 303-313
-
-
Ma, J.1
Sigler, P.B.2
Karplus, M.3
-
26
-
-
41049092674
-
Coupling between global dynamics and signal transduction pathways: A mechanism of allostery for chaperonin GroEL
-
DOI 10.1039/b717819k
-
C. Chennubhotla, Z. Yang, and I. Bahar Coupling between global dynamics and signal transduction pathways: a mechanism of allostery for chaperonin GroEL Mol. Biosyst. 4 2008 287 292 (Pubitemid 351422583)
-
(2008)
Molecular BioSystems
, vol.4
, Issue.4
, pp. 287-292
-
-
Chennubhotla, C.1
Yang, Z.2
Bahar, I.3
-
28
-
-
34848852941
-
Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations
-
DOI 10.1529/biophysj.107.105270
-
W. Zheng, B.R. Brooks, and D. Thirumalai Allosteric transitions in the chaperonin GroEL are captured by a dominant normal mode that is most robust to sequence variations Biophys. J. 93 2007 2289 2299 (Pubitemid 47511128)
-
(2007)
Biophysical Journal
, vol.93
, Issue.7
, pp. 2289-2299
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
29
-
-
61649124866
-
Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle
-
R. Tehver, J. Chen, and D. Thirumalai Allostery wiring diagrams in the transitions that drive the GroEL reaction cycle J. Mol. Biol. 387 2009 390 406
-
(2009)
J. Mol. Biol.
, vol.387
, pp. 390-406
-
-
Tehver, R.1
Chen, J.2
Thirumalai, D.3
-
30
-
-
41449090651
-
Multiple States of a Nucleotide-Bound Group 2 Chaperonin
-
DOI 10.1016/j.str.2008.01.016, PII S0969212608000701
-
D.K. Clare, and S. Stagg H.R. Saibil Multiple states of a nucleotide-bound group 2 chaperonin Structure 16 2008 528 534 (Pubitemid 351458705)
-
(2008)
Structure
, vol.16
, Issue.4
, pp. 528-534
-
-
Clare, D.K.1
Stagg, S.2
Quispe, J.3
Farr, G.W.4
Horwich, A.L.5
Saibil, H.R.6
-
31
-
-
0037285752
-
A core-weighted fitting method for docking atomic structures into low-resolution maps: Application to cryo-electron microscopy
-
DOI 10.1016/S1047-8477(02)00570-1, PII S1047847702005701
-
X. Wu, and J.L. Milne B.R. Brooks A core-weighted fitting method for docking atomic structures into low-resolution maps: application to cryo-electron microscopy J. Struct. Biol. 141 2003 63 76 (Pubitemid 36269107)
-
(2003)
Journal of Structural Biology
, vol.141
, Issue.1
, pp. 63-76
-
-
Wu, X.1
Milne, J.L.S.2
Borgnia, M.J.3
Rostapshov, A.V.4
Subramaniam, S.5
Brooks, B.R.6
-
33
-
-
0242509772
-
Self-guided Langevin dynamics simulation method
-
X. Wu, and B.R. Brooks Self-guided Langevin dynamics simulation method Chem. Phys. Lett. 381 2003 512 518
-
(2003)
Chem. Phys. Lett.
, vol.381
, pp. 512-518
-
-
Wu, X.1
Brooks, B.R.2
-
34
-
-
0037375367
-
Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials
-
DOI 10.1002/prot.10330
-
S.A. Hassan, and E.L. Mehler H. Weinstein Molecular dynamics simulations of peptides and proteins with a continuum electrostatic model based on screened Coulomb potentials Proteins 51 2003 109 125 (Pubitemid 36293037)
-
(2003)
Proteins: Structure, Function and Genetics
, vol.51
, Issue.1
, pp. 109-125
-
-
Hassan, S.A.1
Mehler, E.L.2
Zhang, D.3
Weinstein, H.4
-
35
-
-
0000197372
-
Large amplitude elastic motions in proteins from a single-parameter, atomic analysis
-
M.M. Tirion Large amplitude elastic motions in proteins from a single-parameter, atomic analysis Phys. Rev. Lett. 77 1996 1905 1908 (Pubitemid 126625816)
-
(1996)
Physical Review Letters
, vol.77
, Issue.9
, pp. 1905-1908
-
-
Tirion, M.M.1
-
36
-
-
33646742004
-
Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations
-
W. Zheng, B.R. Brooks, and D. Thirumalai Low-frequency normal modes that describe allosteric transitions in biological nanomachines are robust to sequence variations Proc. Natl. Acad. Sci. USA 103 2006 7664 7669
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 7664-7669
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
37
-
-
0029560322
-
Hinge-bending motion in citrate synthase arising from normal mode calculations
-
DOI 10.1002/prot.340230410
-
O. Marques, and Y.-H. Sanejouand Hinge-bending motion in citrate synthase arising from normal mode calculations Proteins 23 1995 557 560 (Pubitemid 26009518)
-
(1995)
Proteins: Structure, Function and Genetics
, vol.23
, Issue.4
, pp. 557-560
-
-
Marques, O.1
Sanejouand, Y.-H.2
-
38
-
-
0000216012
-
Collective protein dynamics and nuclear spin relaxation
-
R. Brüschweiler Collective protein dynamics and nuclear spin relaxation J. Chem. Phys. 102 1995 3396 3403
-
(1995)
J. Chem. Phys.
, vol.102
, pp. 3396-3403
-
-
Brüschweiler, R.1
-
39
-
-
17044427535
-
Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved
-
W. Zheng, and B.R. Brooks D. Thirumalai Network of dynamically important residues in the open/closed transition in polymerases is strongly conserved Structure 13 2005 565 577
-
(2005)
Structure
, vol.13
, pp. 565-577
-
-
Zheng, W.1
Brooks, B.R.2
Thirumalai, D.3
-
40
-
-
0842332836
-
NMR Studies on the Substrate-binding Domains of the Thermosome: Structural Plasticity in the Protrusion Region
-
DOI 10.1016/j.jmb.2003.12.035
-
M. Heller, and M. John H. Kessler NMR studies on the substrate-binding domains of the thermosome: structural plasticity in the protrusion region J. Mol. Biol. 336 2004 717 729 (Pubitemid 38183024)
-
(2004)
Journal of Molecular Biology
, vol.336
, Issue.3
, pp. 717-729
-
-
Heller, M.1
John, M.2
Coles, M.3
Bosch, G.4
Baumeister, W.5
Kessler, H.6
-
41
-
-
0032701797
-
Group II chaperonins: New TRiC(k)s and turns of a protein folding machine
-
DOI 10.1006/jmbi.1999.3008
-
I. Gutsche, L.O. Essen, and W. Baumeister Group II chaperonins: new TRiC(k)s and turns of a protein folding machine J. Mol. Biol. 293 1999 295 312 (Pubitemid 29516171)
-
(1999)
Journal of Molecular Biology
, vol.293
, Issue.2
, pp. 295-312
-
-
Gutsche, I.1
Essen, L.-O.2
Baumeister, W.3
-
42
-
-
0038737003
-
Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis
-
DOI 10.1016/S0092-8674(03)00307-6
-
A.S. Meyer, and J.R. Gillespie J. Frydman Closing the folding chamber of the eukaryotic chaperonin requires the transition state of ATP hydrolysis Cell 113 2003 369 381 (Pubitemid 36556118)
-
(2003)
Cell
, vol.113
, Issue.3
, pp. 369-381
-
-
Meyer, A.S.1
Gillespie, J.R.2
Walther, D.3
Millet, I.S.4
Doniach, S.5
Frydman, J.6
-
43
-
-
78650980445
-
Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin
-
I.G. Muñoz, and H. Yébenes G. Montoya Crystal structure of the open conformation of the mammalian chaperonin CCT in complex with tubulin Nat. Struct. Mol. Biol. 18 2011 14 19
-
(2011)
Nat. Struct. Mol. Biol.
, vol.18
, pp. 14-19
-
-
Muñoz, I.G.1
Yébenes, H.2
Montoya, G.3
-
44
-
-
77951232896
-
Versatile substrate protein recognition mechanism of the eukaryotic chaperonin CCT
-
M. Jayasinghe, C. Tewmey, and G. Stan Versatile substrate protein recognition mechanism of the eukaryotic chaperonin CCT Proteins 78 2010 1254 1265
-
(2010)
Proteins
, vol.78
, pp. 1254-1265
-
-
Jayasinghe, M.1
Tewmey, C.2
Stan, G.3
-
45
-
-
0033540034
-
Eukaryotic type II chaperonin CCT interacts with actin through specific subunits
-
O. Llorca, and E.A. McCormack J.M. Valpuesta Eukaryotic type II chaperonin CCT interacts with actin through specific subunits Nature 402 1999 693 696 (Pubitemid 129516343)
-
(1999)
Nature
, vol.402
, Issue.6762
, pp. 693-696
-
-
Llorca, O.1
McCormack, E.A.2
Hynes, G.3
Grantham, J.4
Cordell, J.5
Carrascosa, J.L.6
Willison, K.R.7
Fernandez, J.J.8
Valpuesta, J.M.9
-
46
-
-
0034669110
-
Eukaryotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations
-
O. Llorca, and J. Martín-Benito J.M. Valpuesta Eukaryotic chaperonin CCT stabilizes actin and tubulin folding intermediates in open quasi-native conformations EMBO J. 19 2000 5971 5979
-
(2000)
EMBO J.
, vol.19
, pp. 5971-5979
-
-
Llorca, O.1
Martín-Benito, J.2
Valpuesta, J.M.3
-
47
-
-
45649083920
-
Concerted release of substrate domains from GroEL by ATP is demonstrated with FRET
-
N. Papo, and Y. Kipnis A. Horovitz Concerted release of substrate domains from GroEL by ATP is demonstrated with FRET J. Mol. Biol. 380 2008 717 725
-
(2008)
J. Mol. Biol.
, vol.380
, pp. 717-725
-
-
Papo, N.1
Kipnis, Y.2
Horovitz, A.3
-
49
-
-
34547830871
-
Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: A lattice study
-
E. Jacob, A. Horovitz, and R. Unger Different mechanistic requirements for prokaryotic and eukaryotic chaperonins: a lattice study Bioinformatics 23 2007 i240 i248
-
(2007)
Bioinformatics
, vol.23
-
-
Jacob, E.1
Horovitz, A.2
Unger, R.3
-
50
-
-
77955282609
-
Equivalent mutations in the eight subunits of the chaperonin CCT produce dramatically different cellular and gene expression phenotypes
-
M. Amit, and S.J. Weisberg A. Horovitz Equivalent mutations in the eight subunits of the chaperonin CCT produce dramatically different cellular and gene expression phenotypes J. Mol. Biol. 401 2010 532 543
-
(2010)
J. Mol. Biol.
, vol.401
, pp. 532-543
-
-
Amit, M.1
Weisberg, S.J.2
Horovitz, A.3
-
51
-
-
66149129564
-
Coupling between normal modes drives protein conformational dynamics: Illustrations using allosteric transitions in myosin II
-
W. Zheng, and D. Thirumalai Coupling between normal modes drives protein conformational dynamics: illustrations using allosteric transitions in myosin II Biophys. J. 96 2009 2128 2137
-
(2009)
Biophys. J.
, vol.96
, pp. 2128-2137
-
-
Zheng, W.1
Thirumalai, D.2
-
52
-
-
70349661903
-
Global motions of the nuclear pore complex: Insights from elastic network models
-
T.R. Lezon, A. Sali, and I. Bahar Global motions of the nuclear pore complex: insights from elastic network models PLoS Comput. Biol. 5 2009 e1000496
-
(2009)
PLoS Comput. Biol.
, vol.5
, pp. 1000496
-
-
Lezon, T.R.1
Sali, A.2
Bahar, I.3
-
53
-
-
79952293131
-
Unfolding and translocation pathway of substrate protein controlled by structure in repetitive allosteric cycles of the ClpY ATPase
-
A. Kravats, M. Jayasinghe, and G. Stan Unfolding and translocation pathway of substrate protein controlled by structure in repetitive allosteric cycles of the ClpY ATPase Proc. Natl. Acad. Sci. USA 108 2011 2234 2239
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 2234-2239
-
-
Kravats, A.1
Jayasinghe, M.2
Stan, G.3
-
55
-
-
84874194443
-
-
POV-Ray Team Persistence of Vision Raytracer Williamstown, Victoria, Australia
-
POV-Ray Team POV-Ray 1991, 1997 Persistence of Vision Raytracer Williamstown, Victoria, Australia
-
POV-Ray 1991, 1997
-
-
|