-
1
-
-
33646559836
-
Environmental whole-genome amplification to access microbial populations in contaminated sediments
-
Abulencia CB, Wyborski DL, Garcia JA, Podar M, Chen W, Chang SH, Chang HW, Watson D, Brodie EL, Hazen TC, Keller M (2006) Environmental whole-genome amplification to access microbial populations in contaminated sediments. Appl Environ Microbiol 72:3291-3301
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 3291-3301
-
-
Abulencia, C.B.1
Wyborski, D.L.2
Garcia, J.A.3
Podar, M.4
Chen, W.5
Chang, S.H.6
Chang, H.W.7
Watson, D.8
Brodie, E.L.9
Hazen, T.C.10
Keller, M.11
-
2
-
-
0033758582
-
Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology
-
Amann R, Ludwig W (2000) Ribosomal RNA-targeted nucleic acid probes for studies in microbial ecology. FEMS Microbiol Rev 24:555-565
-
(2000)
FEMS Microbiol Rev
, vol.24
, pp. 555-565
-
-
Amann, R.1
Ludwig, W.2
-
3
-
-
0028946084
-
Phylogenetic identification and in situ detection of individual microbial cells without cultivation
-
Amann R, Ludwig W, Schleifer KH (1995) Phylogenetic identification and in situ detection of individual microbial cells without cultivation. Microbiol Rev 59:143-169
-
(1995)
Microbiol Rev
, vol.59
, pp. 143-169
-
-
Amann, R.1
Ludwig, W.2
Schleifer, K.H.3
-
4
-
-
52149106471
-
Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany
-
Amaral-Zettler L, Peplies J, Ramette A, Fuchs B, Ludwig W, Glockner FO (2008) Proceedings of the international workshop on Ribosomal RNA technology, April 7-9, 2008, Bremen, Germany. Syst Appl Microbiol 31:258-268
-
(2008)
Syst Appl Microbiol
, vol.31
, pp. 258-268
-
-
Amaral-Zettler, L.1
Peplies, J.2
Ramette, A.3
Fuchs, B.4
Ludwig, W.5
Glockner, F.O.6
-
5
-
-
3142774962
-
Characterization of fungal biodiversity in compost and vermicompost
-
Anastasi A, Varese G, Voyron S, Scannerini S, Morchisio VF (2004) Characterization of fungal biodiversity in compost and vermicompost. Compost Sci Util 12:185-191
-
(2004)
Compost Sci Util
, vol.12
, pp. 185-191
-
-
Anastasi, A.1
Varese, G.2
Voyron, S.3
Scannerini, S.4
Morchisio, V.F.5
-
6
-
-
0037224886
-
Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil
-
Anderson IC, Campbell CD, Prosser JI (2003) Potential bias of fungal 18S rDNA and internal transcribed spacer polymerase chain reaction primers for estimating fungal biodiversity in soil. Environ Microbiol 5:36-47
-
(2003)
Environ Microbiol
, vol.5
, pp. 36-47
-
-
Anderson, I.C.1
Campbell, C.D.2
Prosser, J.I.3
-
7
-
-
0242384034
-
Review and re-analysis of domain-specific 16S primers
-
Baker GC, Smith JJ, Cowan DA (2003) Review and re-analysis of domain-specific 16S primers. J Microbiol Methods 55:541-555
-
(2003)
J Microbiol Methods
, vol.55
, pp. 541-555
-
-
Baker, G.C.1
Smith, J.J.2
Cowan, D.A.3
-
8
-
-
0142222534
-
Parallel gene analysis with allele-specific padlock probes and tag microarrays
-
Banér J, Isaksson A, Waldenstrom E, Jarvius J, Landegren U, Nilsson M (2003) Parallel gene analysis with allele-specific padlock probes and tag microarrays. Nucleic Acids Res 31:e103
-
(2003)
Nucleic Acids Res
, vol.31
, pp. e103
-
-
Banér, J.1
Isaksson, A.2
Waldenstrom, E.3
Jarvius, J.4
Landegren, U.5
Nilsson, M.6
-
9
-
-
0026056970
-
Genetic disease detection and DNA amplification using cloned thermostable ligase
-
Barany F (1991) Genetic disease detection and DNA amplification using cloned thermostable ligase. Proc Natl Acad Sci USA 88:189-193
-
(1991)
Proc Natl Acad Sci USA
, vol.88
, pp. 189-193
-
-
Barany, F.1
-
10
-
-
0029949236
-
Isolation of Thermus strains from hot composts (60 to 80 degrees C)
-
Beffa T, Blanc M, Lyon PF, Vogt G, Marchiani M, Fischer JL, Aragno M (1996) Isolation of Thermus strains from hot composts (60 to 80 degrees C). Appl Environ Microbiol 62:1723-1727
-
(1996)
Appl Environ Microbiol
, vol.62
, pp. 1723-1727
-
-
Beffa, T.1
Blanc, M.2
Lyon, P.F.3
Vogt, G.4
Marchiani, M.5
Fischer, J.L.6
Aragno, M.7
-
11
-
-
46749150088
-
The tragedy of the uncommon: Understanding limitations in the analysis of microbial diversity
-
Bent SJ, Forney LJ (2008) The tragedy of the uncommon: understanding limitations in the analysis of microbial diversity. ISME J 2:689-695
-
(2008)
ISME J
, vol.2
, pp. 689-695
-
-
Bent, S.J.1
Forney, L.J.2
-
12
-
-
0030774863
-
Rapid identification of heterotrophic, thermophilic, spore-forming bacteria isolated from hot compost
-
Blanc M, Marilley L, Beffa T, Aragno M (1997) Rapid identification of heterotrophic, thermophilic, spore-forming bacteria isolated from hot compost. Int J Syst Bacteriol 47:1246-1248
-
(1997)
Int J Syst Bacteriol
, vol.47
, pp. 1246-1248
-
-
Blanc, M.1
Marilley, L.2
Beffa, T.3
Aragno, M.4
-
13
-
-
2942527326
-
Oligonucleotide microarrays in microbial diagnostics
-
Bodrossy L, Sessitsch A (2004) Oligonucleotide microarrays in microbial diagnostics. Curr Opin Microbiol 7:245-254
-
(2004)
Curr Opin Microbiol
, vol.7
, pp. 245-254
-
-
Bodrossy, L.1
Sessitsch, A.2
-
14
-
-
0038302040
-
Development and validation of a diagnostic microbial microarray for methanotrophs
-
Bodrossy L, Stralis-Pavese N, Murrell JC, Radajewski S, Weilharter A, Sessitsch A (2003) Development and validation of a diagnostic microbial microarray for methanotrophs. Environ Microbiol 5:566-582
-
(2003)
Environ Microbiol
, vol.5
, pp. 566-582
-
-
Bodrossy, L.1
Stralis-Pavese, N.2
Murrell, J.C.3
Radajewski, S.4
Weilharter, A.5
Sessitsch, A.6
-
15
-
-
0037770278
-
Soil fungal community structure in a temperate upland grassland soil
-
Brodie EL, Edwards S, Clipson N (2003) Soil fungal community structure in a temperate upland grassland soil. Fems Microbiol Ecol 45:105-114
-
(2003)
Fems Microbiol Ecol
, vol.45
, pp. 105-114
-
-
Brodie, E.L.1
Edwards, S.2
Clipson, N.3
-
16
-
-
33846035747
-
Urban aerosols harbor diverse and dynamic bacterial populations
-
Brodie EL, DeSantis TZ, Parker JP, Zubietta IX, Piceno YM, Andersen GL (2007) Urban aerosols harbor diverse and dynamic bacterial populations. Proc Natl Acad Sci USA 104:299-304
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, pp. 299-304
-
-
Brodie, E.L.1
DeSantis, T.Z.2
Parker, J.P.3
Zubietta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
17
-
-
3343018968
-
Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction)
-
Busti E, Bordoni R, Castiglioni B, Monciardini P, Sosio M, Donadio S, Consolandi C, Rossi Bernardi L, Battaglia C, De Bellis G (2002) Bacterial discrimination by means of a universal array approach mediated by LDR (ligase detection reaction). BMC Microbiol 2:27
-
(2002)
BMC Microbiol
, vol.2
, pp. 27
-
-
Busti, E.1
Bordoni, R.2
Castiglioni, B.3
Monciardini, P.4
Sosio, M.5
Donadio, S.6
Consolandi, C.7
Rossi Bernardi, L.8
Battaglia, C.9
De Bellis, G.10
-
18
-
-
10444235787
-
Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria
-
Castiglioni B, Rizzi E, Frosini A, Sivonen K, Rajaniemi P, Rantala A, Mugnai MA, Ventura S, Wilmotte A, Boutte C, Grubisic S, Balthasart P, Consolandi C, Bordoni R, Mezzelani A, Battaglia C, De Bellis G (2004) Development of a universal microarray based on the ligation detection reaction and 16S rRNA gene polymorphism to target diversity of cyanobacteria. Appl Environ Microbiol 70:7161-7172
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 7161-7172
-
-
Castiglioni, B.1
Rizzi, E.2
Frosini, A.3
Sivonen, K.4
Rajaniemi, P.5
Rantala, A.6
Mugnai, M.A.7
Ventura, S.8
Wilmotte, A.9
Boutte, C.10
Grubisic, S.11
Balthasart, P.12
Consolandi, C.13
Bordoni, R.14
Mezzelani, A.15
Battaglia, C.16
De Bellis, G.17
-
19
-
-
84920107479
-
Compost microbial activity related to compost stability
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Ceustermans A, Coosemans J, Ryckeboer J (2010) Compost microbial activity related to compost stability. In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 115-134
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 115-134
-
-
Ceustermans, A.1
Coosemans, J.2
Ryckeboer, J.3
-
20
-
-
0031940084
-
The influence of yeast on thermophilic composting of food waste
-
Choi MH, Park YH (1998) The influence of yeast on thermophilic composting of food waste. Lett Appl Microbiol 26:175-178
-
(1998)
Lett Appl Microbiol
, vol.26
, pp. 175-178
-
-
Choi, M.H.1
Park, Y.H.2
-
21
-
-
33645977196
-
Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds
-
Costa R, Gotz M, Mrotzek N, Lottmann J, Berg G, Smalla K (2006) Effects of site and plant species on rhizosphere community structure as revealed by molecular analysis of microbial guilds. FEMS Microbiol Ecol 56:236-249
-
(2006)
FEMS Microbiol Ecol
, vol.56
, pp. 236-249
-
-
Costa, R.1
Gotz, M.2
Mrotzek, N.3
Lottmann, J.4
Berg, G.5
Smalla, K.6
-
22
-
-
23944487811
-
Microbiology. Exploring microbial diversity - A vast below
-
Curtis TP, Sloan WT (2005) Microbiology. Exploring microbial diversity - a vast below. Science 309:1331-1333
-
(2005)
Science
, vol.309
, pp. 1331-1333
-
-
Curtis, T.P.1
Sloan, W.T.2
-
23
-
-
0035075108
-
Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA
-
Dees PM, Ghiorse WC (2001) Microbial diversity in hot synthetic compost as revealed by PCR-amplified rRNA sequences from cultivated isolates and extracted DNA. FEMS Microbiol Ecol 35:207-216
-
(2001)
FEMS Microbiol Ecol
, vol.35
, pp. 207-216
-
-
Dees, P.M.1
Ghiorse, W.C.2
-
24
-
-
34248159346
-
High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment
-
DeSantis TZ, Brodie EL, Moberg JP, Zubieta IX, Piceno YM, Andersen GL (2007) High-density universal 16S rRNA microarray analysis reveals broader diversity than typical clone library when sampling the environment. Microb Ecol 53:371-383
-
(2007)
Microb Ecol
, vol.53
, pp. 371-383
-
-
DeSantis, T.Z.1
Brodie, E.L.2
Moberg, J.P.3
Zubieta, I.X.4
Piceno, Y.M.5
Andersen, G.L.6
-
26
-
-
0024444791
-
Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA
-
Edwards U, Rogall T, Blocker H, Emde M, Bottger EC (1989) Isolation and direct complete nucleotide determination of entire genes. Characterization of a gene coding for 16S ribosomal RNA. Nucleic Acids Res 17:7843-7853
-
(1989)
Nucleic Acids Res
, vol.17
, pp. 7843-7853
-
-
Edwards, U.1
Rogall, T.2
Blocker, H.3
Emde, M.4
Bottger, E.C.5
-
27
-
-
84920191354
-
Amending annexes VI and VIII to regulations (EC) No 1774/2002 as regards processing standards for biogas and composting plants and requirements for manure
-
8 February 2006, No 208/2006, L 36/25-31
-
European Parliament and of the Council Commission regulations (EC) (2006) Amending annexes VI and VIII to regulations (EC) No 1774/2002 as regards processing standards for biogas and composting plants and requirements for manure. Official Journal of the European Communities 8 February 2006, No 208/2006, L 36/25-31
-
(2006)
Official Journal of the European Communities
-
-
European Parliament and of the Council Commission regulations (EC)1
-
29
-
-
0001568327
-
Thermphilic and thermotolerant molds and actinomycetes of mushroom compost during peak heating
-
Fergus CL (1964) Thermphilic and thermotolerant molds and actinomycetes of mushroom compost during peak heating. Mycologia 56:267-284
-
(1964)
Mycologia
, vol.56
, pp. 267-284
-
-
Fergus, C.L.1
-
30
-
-
17044386980
-
Design and application of an oligonucleotide microarray for the investigation of compost microbial communities
-
Franke-Whittle IH, Klammer SH, Insam H (2005) Design and application of an oligonucleotide microarray for the investigation of compost microbial communities. J Microbiol Methods 62:37-56
-
(2005)
J Microbiol Methods
, vol.62
, pp. 37-56
-
-
Franke-Whittle, I.H.1
Klammer, S.H.2
Insam, H.3
-
31
-
-
62549132510
-
Application of COMPOCHIP microarray to investigate the bacterial communities of different composts
-
Franke-Whittle IH, Knapp BA, Fuchs J, Kaufmann R, Insam H (2009) Application of COMPOCHIP microarray to investigate the bacterial communities of different composts. Microb Ecol 57:510-521
-
(2009)
Microb Ecol
, vol.57
, pp. 510-521
-
-
Franke-Whittle, I.H.1
Knapp, B.A.2
Fuchs, J.3
Kaufmann, R.4
Insam, H.5
-
32
-
-
84874743883
-
Interactions between beneficial and harmful micro-organisms: From the composting process to compost application
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Fuchs JG (2010) Interactions between beneficial and harmful micro-organisms: from the composting process to compost application. In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 213-230
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 213-230
-
-
Fuchs, J.G.1
-
33
-
-
0033578928
-
Universal DNA microarray method for multiplex detection of low abundance point mutations
-
Gerry NP, Witowski NE, Day J, Hammer RP, Barany G, Barany F (1999) Universal DNA microarray method for multiplex detection of low abundance point mutations. J Mol Biol 292:251-262
-
(1999)
J Mol Biol
, vol.292
, pp. 251-262
-
-
Gerry, N.P.1
Witowski, N.E.2
Day, J.3
Hammer, R.P.4
Barany, G.5
Barany, F.6
-
35
-
-
0030984907
-
Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology
-
Guschin DY, Mobarry BK, Proudnikov D, Stahl DA, Rittmann BE, Mirzabekov AD (1997) Oligonucleotide microchips as genosensors for determinative and environmental studies in microbiology. Appl Environ Microbiol 63:2397-2402
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 2397-2402
-
-
Guschin, D.Y.1
Mobarry, B.K.2
Proudnikov, D.3
Stahl, D.A.4
Rittmann, B.E.5
Mirzabekov, A.D.6
-
36
-
-
11144310730
-
Molecular characterization of fungal community dynamics in the initial stages of composting
-
Hansgate AM, Schloss PD, Hay AG, Walker LP (2005) Molecular characterization of fungal community dynamics in the initial stages of composting. FEMS Microbiol Ecol 51:209-214
-
(2005)
FEMS Microbiol Ecol
, vol.51
, pp. 209-214
-
-
Hansgate, A.M.1
Schloss, P.D.2
Hay, A.G.3
Walker, L.P.4
-
37
-
-
0030739128
-
Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients
-
Heuer H, Krsek M, Baker P, Smalla K, Wellington EM (1997) Analysis of actinomycete communities by specific amplification of genes encoding 16S rRNA and gel-electrophoretic separation in denaturing gradients. Appl Environ Microbiol 63:3233-3241
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 3233-3241
-
-
Heuer, H.1
Krsek, M.2
Baker, P.3
Smalla, K.4
Wellington, E.M.5
-
38
-
-
35148888609
-
Microbial population structures in the deep marine biosphere
-
Huber JA, Mark Welch DB, Morrison HG, Huse SM, Neal PR, Butterfield DA, Sogin ML (2007) Microbial population structures in the deep marine biosphere. Science 318:97-100
-
(2007)
Science
, vol.318
, pp. 97-100
-
-
Huber, J.A.1
Mark Welch, D.B.2
Morrison, H.G.3
Huse, S.M.4
Neal, P.R.5
Butterfield, D.A.6
Sogin, M.L.7
-
39
-
-
52949115612
-
Microbiology: Metagenomics
-
Hugenholtz P, Tyson GW (2008) Microbiology: metagenomics. Nature 455:481-483
-
(2008)
Nature
, vol.455
, pp. 481-483
-
-
Hugenholtz, P.1
Tyson, G.W.2
-
41
-
-
55149093398
-
Probe-based negative selection for underrepresented phylotypes in large environmental clone libraries
-
Hultman J, Pitkäranta M, Romantschuk M, Auvinen P, Paulin L (2008a) Probe-based negative selection for underrepresented phylotypes in large environmental clone libraries. J Microbiol Methods 75:457-463
-
(2008)
J Microbiol Methods
, vol.75
, pp. 457-463
-
-
Hultman, J.1
Pitkäranta, M.2
Romantschuk, M.3
Auvinen, P.4
Paulin, L.5
-
42
-
-
61649124547
-
The application of ligasedetection-reaction microarray for compost samples
-
Hultman J, Ritari J, Paulin L, Romantschuk M, Auvinen P (2008b) The application of ligasedetection-reaction microarray for compost samples. BMC Microbiol 8:237
-
(2008)
BMC Microbiol
, vol.8
, pp. 237
-
-
Hultman, J.1
Ritari, J.2
Paulin, L.3
Romantschuk, M.4
Auvinen, P.5
-
43
-
-
74049144499
-
Determination of fungal succession during municipal solid waste composting using a cloning-based analysis
-
Hultman J, Vasara T, Partanen P, Kurola J, Kontro M, Paulin L, Auvinen P, Romantschuk M (2009a) Determination of fungal succession during municipal solid waste composting using a cloning-based analysis. J Appl Microbiol DOI: 10.1111/j.1365-2672.2009.04439.x
-
(2009)
J Appl Microbiol
-
-
Hultman, J.1
Vasara, T.2
Partanen, P.3
Kurola, J.4
Kontro, M.5
Paulin, L.6
Auvinen, P.7
Romantschuk, M.8
-
44
-
-
0034982818
-
Developments in soil microbiology since the mid 1960's
-
Insam H (2001) Developments in soil microbiology since the mid 1960's. Geoderma 100:389-402
-
(2001)
Geoderma
, vol.100
, pp. 389-402
-
-
Insam, H.1
-
45
-
-
78049237399
-
Microbes in aerobic and anaerobic waste treatment
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Insam I, Franke-Whittle IH, Goberna M (2010) Microbes in aerobic and anaerobic waste treatment. In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 1-34
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 1-34
-
-
Insam, I.1
Franke-Whittle, I.H.2
Goberna, M.3
-
46
-
-
0038725007
-
Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis
-
Ishii K, Takii S (2003) Comparison of microbial communities in four different composting processes as evaluated by denaturing gradient gel electrophoresis analysis. J Appl Microbiol 95:109-119
-
(2003)
J Appl Microbiol
, vol.95
, pp. 109-119
-
-
Ishii, K.1
Takii, S.2
-
47
-
-
0033678954
-
Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis
-
Ishii K, Fukui M, Takii S (2000) Microbial succession during a composting process as evaluated by denaturing gradient gel electrophoresis analysis. J Appl Microbiol 89:768-777
-
(2000)
J Appl Microbiol
, vol.89
, pp. 768-777
-
-
Ishii, K.1
Fukui, M.2
Takii, S.3
-
48
-
-
4143136662
-
Ecological significance of microdiversity: Identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies
-
Jaspers E, Overmann J (2004) Ecological significance of microdiversity: identical 16S rRNA gene sequences can be found in bacteria with highly divergent genomes and ecophysiologies. Appl Environ Microbiol 70:4831-4839
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4831-4839
-
-
Jaspers, E.1
Overmann, J.2
-
49
-
-
0030894624
-
Novel group within the kingdom Crenarchaeota from boreal forest soil
-
Jürgens G, Lindström K, Saano A (1997) Novel group within the kingdom Crenarchaeota from boreal forest soil. Appl Environ Microbiol 63:803-805
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 803-805
-
-
Jürgens, G.1
Lindström, K.2
Saano, A.3
-
50
-
-
0015664111
-
Thermophilic fungi in a municipal waste compost system
-
Kane BE, Mullins JT (1973) Thermophilic fungi in a municipal waste compost system. Mycologia 65:1087-1100
-
(1973)
Mycologia
, vol.65
, pp. 1087-1100
-
-
Kane, B.E.1
Mullins, J.T.2
-
52
-
-
84880395113
-
Do composts affect the soil microbial community?
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Knapp B, Ros M, Insam H (2010) Do composts affect the soil microbial community? In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 271-292
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 271-292
-
-
Knapp, B.1
Ros, M.2
Insam, H.3
-
54
-
-
33747479446
-
Archaea predominate among ammonia-oxidizing prokaryotes in soils
-
Leininger S, Urich T, Schloter M, Schwark L, Qi J, Nicol GW, Prosser JI, Schuster SC, Schleper C (2006) Archaea predominate among ammonia-oxidizing prokaryotes in soils. Nature 442:806-809
-
(2006)
Nature
, vol.442
, pp. 806-809
-
-
Leininger, S.1
Urich, T.2
Schloter, M.3
Schwark, L.4
Qi, J.5
Nicol, G.W.6
Prosser, J.I.7
Schuster, S.C.8
Schleper, C.9
-
55
-
-
0030661563
-
Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA
-
Liu WT, Marsh TL, Cheng H, Forney LJ (1997) Characterization of microbial diversity by determining terminal restriction fragment length polymorphisms of genes encoding 16S rRNA. Appl Environ Microbiol 63:4516-4522
-
(1997)
Appl Environ Microbiol
, vol.63
, pp. 4516-4522
-
-
Liu, W.T.1
Marsh, T.L.2
Cheng, H.3
Forney, L.J.4
-
56
-
-
10444242668
-
Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal co-occurrence of recognized genera and novel lineages
-
Loy A, Kusel K, Lehner A, Drake HL, Wagner M (2004) Microarray and functional gene analyses of sulfate-reducing prokaryotes in low-sulfate, acidic fens reveal co-occurrence of recognized genera and novel lineages. Appl Environ Microbiol 70:6998-7009
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 6998-7009
-
-
Loy, A.1
Kusel, K.2
Lehner, A.3
Drake, H.L.4
Wagner, M.5
-
57
-
-
24044455869
-
Genome sequencing in microfabricated high-density picolitre reactors
-
Margulies M, Egholm M, Altman WE, Attiya S, Bader JS, Bemben LA, Berka J, Braverman MS, Chen YJ, Chen Z, Dewell SB, Du L, Fierro JM, Gomes XV, Godwin BC, He W, Helgesen S, Ho CH, Irzyk GP, Jando SC, Alenquer ML, Jarvie TP, Jirage KB, Kim JB, Knight JR, Lanza JR, Leamon JH, Lefkowitz SM, Lei M, Li J, Lohman KL, Lu H, Makhijani VB, McDade KE, McKenna MP, Myers EW, Nickerson E, Nobile JR, Plant R, Puc BP, Ronan MT, Roth GT, Sarkis GJ, Simons JF, Simpson JW, Srinivasan M, Tartaro KR, Tomasz A, Vogt KA, Volkmer GA, Wang SH, Wang Y, Weiner MP, Yu P, Begley RF, Rothberg JM (2005) Genome sequencing in microfabricated high-density picolitre reactors. Nature 437:376-380
-
(2005)
Nature
, vol.437
, pp. 376-380
-
-
Margulies, M.1
Egholm, M.2
Altman, W.E.3
Attiya, S.4
Bader, J.S.5
Bemben, L.A.6
Berka, J.7
Braverman, M.S.8
Chen, Y.J.9
Chen, Z.10
Dewell, S.B.11
Du, L.12
Fierro, J.M.13
Gomes, X.V.14
Godwin, B.C.15
He, W.16
Helgesen, S.17
Ho, C.H.18
Irzyk, G.P.19
Jando, S.C.20
Alenquer, M.L.21
Jarvie, T.P.22
Jirage, K.B.23
Kim, J.B.24
Knight, J.R.25
Lanza, J.R.26
Leamon, J.H.27
Lefkowitz, S.M.28
Lei, M.29
Li, J.30
Lohman, K.L.31
Lu, H.32
Makhijani, V.B.33
McDade, K.E.34
McKenna, M.P.35
Myers, E.W.36
Nickerson, E.37
Nobile, J.R.38
Plant, R.39
Puc, B.P.40
Ronan, M.T.41
Roth, G.T.42
Sarkis, G.J.43
Simons, J.F.44
Simpson, J.W.45
Srinivasan, M.46
Tartaro, K.R.47
Tomasz, A.48
Vogt, K.A.49
Volkmer, G.A.50
Wang, S.H.51
Wang, Y.52
Weiner, M.P.53
Yu, P.54
Begley, R.F.55
Rothberg, J.M.56
more..
-
58
-
-
31544448331
-
Microbial biogeography: Putting microorganisms on the map
-
Martiny JB, Bohannan BJ, Brown JH, Colwell RK, Fuhrman JA, Green JL, Horner-Devine MC, Kane M, Krumins JA, Kuske CR, Morin PJ, Naeem S, Ovreas L, Reysenbach AL, Smith VH, Staley JT (2006) Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4:102-112
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.1
Bohannan, B.J.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
Horner-Devine, M.C.7
Kane, M.8
Krumins, J.A.9
Kuske, C.R.10
Morin, P.J.11
Naeem, S.12
Ovreas, L.13
Reysenbach, A.L.14
Smith, V.H.15
Staley, J.T.16
-
59
-
-
80051673290
-
Compost microbial populations and interactions with plants
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Minz D, Green SJ, Ofek M, Hadar Y (2010) Compost microbial populations and interactions with plants. In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 231-252
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 231-252
-
-
Minz, D.1
Green, S.J.2
Ofek, M.3
Hadar, Y.4
-
60
-
-
0001868073
-
Denaturing gradient gel electrophoresis (DGGE) in microbial ecology
-
Akkermans ADL, van Elsas JD, de Bruijn FJ eds, Kluwer, Dordrecht
-
Muyzer G, Brinkhoff T, Nubel U, Santegoeds C, Schäfer H, Wawer C (1998) Denaturing gradient gel electrophoresis (DGGE) in microbial ecology. In: Akkermans ADL, van Elsas JD, de Bruijn FJ (eds) Molecular microbial ecology manual, vol 3.4.4. Kluwer, Dordrecht, pp 1-27
-
(1998)
Molecular Microbial Ecology Manual
, vol.344
, pp. 1-27
-
-
Muyzer, G.1
Brinkhoff, T.2
Nubel, U.3
Santegoeds, C.4
Schäfer, H.5
Wawer, C.6
-
61
-
-
34250759722
-
Quantification of Salmonella spp. in composted biosolids using a TaqMan qPCR assay
-
Novinscak A, Surette C, Filion M (2007) Quantification of Salmonella spp. in composted biosolids using a TaqMan qPCR assay. J Microbiol Methods 70:119-126
-
(2007)
J Microbiol Methods
, vol.70
, pp. 119-126
-
-
Novinscak, A.1
Surette, C.2
Filion, M.3
-
62
-
-
0034547801
-
An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics
-
Osborn AM, Moore ER, Timmis KN (2000) An evaluation of terminal-restriction fragment length polymorphism (T-RFLP) analysis for the study of microbial community structure and dynamics. Environ Microbiol 2:39-50
-
(2000)
Environ Microbiol
, vol.2
, pp. 39-50
-
-
Osborn, A.M.1
Moore, E.R.2
Timmis, K.N.3
-
64
-
-
0034105806
-
Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes
-
Peters S, Koschinsky S, Schwieger F, Tebbe CC (2000) Succession of microbial communities during hot composting as detected by PCR-single-strand-conformation polymorphism-based genetic profiles of small-subunit rRNA genes. Appl Environ Microbiol 66:930-936
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 930-936
-
-
Peters, S.1
Koschinsky, S.2
Schwieger, F.3
Tebbe, C.C.4
-
65
-
-
1842710225
-
Composting in a laboratory reactor: A review
-
Petiot C, de Guardia A (2004) Composting in a laboratory reactor: a review. Compost Sci Util 12:69-79
-
(2004)
Compost Sci Util
, vol.12
, pp. 69-79
-
-
Petiot, C.1
De Guardia, A.2
-
66
-
-
0031711754
-
Bias in template-to-product ratios in multitemplate PCR
-
Poltz MF, Cavanaugh CM (1998) Bias in template-to-product ratios in multitemplate PCR. Appl Environ Microbiol 64:3724-3730
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 3724-3730
-
-
Poltz, M.F.1
Cavanaugh, C.M.2
-
67
-
-
0242676205
-
Sampling strategy in molecular microbial ecology: Influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities
-
Ranjard L, Lejon DP, Mougel C, Schehrer L, Merdinoglu D, Chaussod R (2003) Sampling strategy in molecular microbial ecology: influence of soil sample size on DNA fingerprinting analysis of fungal and bacterial communities. Environ Microbiol 5:1111-1120
-
(2003)
Environ Microbiol
, vol.5
, pp. 1111-1120
-
-
Ranjard, L.1
Lejon, D.P.2
Mougel, C.3
Schehrer, L.4
Merdinoglu, D.5
Chaussod, R.6
-
68
-
-
38549100519
-
Identification of hepatotoxinproducing cyanobacteria by DNA-chip
-
Rantala A, Rizzi E, Castiglioni B, de Bellis G, Sivonen K (2008) Identification of hepatotoxinproducing cyanobacteria by DNA-chip. Environ Microbiol 10:653-664
-
(2008)
Environ Microbiol
, vol.10
, pp. 653-664
-
-
Rantala, A.1
Rizzi, E.2
Castiglioni, B.3
De Bellis, G.4
Sivonen, K.5
-
69
-
-
38049121331
-
Design and testing of "genome-proxy" microarrays to profile marine microbial communities
-
Rich VI, Konstantinidis K, DeLong EF (2008) Design and testing of "genome-proxy" microarrays to profile marine microbial communities. Environ Microbiol 10:506-521
-
(2008)
Environ Microbiol
, vol.10
, pp. 506-521
-
-
Rich, V.I.1
Konstantinidis, K.2
DeLong, E.F.3
-
70
-
-
34547800097
-
Pyrosequencing enumerates and contrasts soil microbial diversity
-
Roesch LF, Fulthorpe RR, Riva A, Casella G, Hadwin AK, Kent AD, Daroub SH, Camargo FA, Farmerie WG, Triplett EW (2007) Pyrosequencing enumerates and contrasts soil microbial diversity. ISME J 1:283-290
-
(2007)
ISME J
, vol.1
, pp. 283-290
-
-
Roesch, L.F.1
Fulthorpe, R.R.2
Riva, A.3
Casella, G.4
Hadwin, A.K.5
Kent, A.D.6
Daroub, S.H.7
Camargo, F.A.8
Farmerie, W.G.9
Triplett, E.W.10
-
71
-
-
0345767374
-
A survey of bacteria and fungi occurring during composting and self-heating processes
-
Ryckeboer J, Mergaert J, Vaes K, Klammer S, De Clercq D, Coosemans J, Insam H, Swings J (2003) A survey of bacteria and fungi occurring during composting and self-heating processes. Ann Microbiol 53:349-410
-
(2003)
Ann Microbiol
, vol.53
, pp. 349-410
-
-
Ryckeboer, J.1
Mergaert, J.2
Vaes, K.3
Klammer, S.4
De Clercq, D.5
Coosemans, J.6
Insam, H.7
Swings, J.8
-
72
-
-
0022372670
-
Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia
-
Saiki RK, Scharf S, Faloona F, Mullis KB, Horn GT, Erlich HA, Arnheim N (1985) Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230:1350-1354
-
(1985)
Science
, vol.230
, pp. 1350-1354
-
-
Saiki, R.K.1
Scharf, S.2
Faloona, F.3
Mullis, K.B.4
Horn, G.T.5
Erlich, H.A.6
Arnheim, N.7
-
74
-
-
0142091645
-
Tracking temporal changes of bacterial community fingerprints during initial stages of composting
-
Schloss PD, Hay AG, Wilson DB, Walker LP (2003) Tracking temporal changes of bacterial community fingerprints during initial stages of composting. FEMS Microbiol Ecol 46:1-9
-
(2003)
FEMS Microbiol Ecol
, vol.46
, pp. 1-9
-
-
Schloss, P.D.1
Hay, A.G.2
Wilson, D.B.3
Walker, L.P.4
-
75
-
-
12144257237
-
Quantifying bacterial population dynamics in compost using 16S rRNA gene probes
-
Schloss PD, Hay AG, Wilson DB, Gossett JM, Walker LP (2005) Quantifying bacterial population dynamics in compost using 16S rRNA gene probes. Appl Microbiol Biotechnol 66:457-463
-
(2005)
Appl Microbiol Biotechnol
, vol.66
, pp. 457-463
-
-
Schloss, P.D.1
Hay, A.G.2
Wilson, D.B.3
Gossett, J.M.4
Walker, L.P.5
-
76
-
-
0035486807
-
Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays
-
Small J, Call DR, Brockman FJ, Straub TM, Chandler DP (2001) Direct detection of 16S rRNA in soil extracts by using oligonucleotide microarrays. Appl Environ Microbiol 67:4708-4716
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 4708-4716
-
-
Small, J.1
Call, D.R.2
Brockman, F.J.3
Straub, T.M.4
Chandler, D.P.5
-
77
-
-
57449118500
-
Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology
-
Smith CJ, Osborn AM (2009) Advantages and limitations of quantitative PCR (Q-PCR)-based approaches in microbial ecology. FEMS Microbiol Ecol 67:6-20
-
(2009)
FEMS Microbiol Ecol
, vol.67
, pp. 6-20
-
-
Smith, C.J.1
Osborn, A.M.2
-
78
-
-
33747073504
-
Microbial diversity in the deep sea and the underexplored "rare biosphere"
-
Sogin ML, Morrison HG, Huber JA, Welch DM, Huse SM, Neal PR, Arrieta JM, Herndl GJ (2006) Microbial diversity in the deep sea and the underexplored "rare biosphere". Proc Natl Acad Sci USA 103:12115-12120
-
(2006)
Proc Natl Acad Sci USA
, vol.103
, pp. 12115-12120
-
-
Sogin, M.L.1
Morrison, H.G.2
Huber, J.A.3
Welch, D.M.4
Huse, S.M.5
Neal, P.R.6
Arrieta, J.M.7
Herndl, G.J.8
-
79
-
-
34447543039
-
Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste
-
Steger K, Sjogren AM, Jarvis A, Jansson JK, Sundh I (2007a) Development of compost maturity and Actinobacteria populations during full-scale composting of organic household waste. J Appl Microbiol 103:487-498
-
(2007)
J Appl Microbiol
, vol.103
, pp. 487-498
-
-
Steger, K.1
Sjogren, A.M.2
Jarvis, A.3
Jansson, J.K.4
Sundh, I.5
-
80
-
-
34848828515
-
Effects of differing temperature management on development of Actinobacteria populations during composting
-
Steger K, Jarvis A, Vasara T, Romantschuk M, Sundh I (2007b) Effects of differing temperature management on development of Actinobacteria populations during composting. Res Microbiol 158:617-624
-
(2007)
Res Microbiol
, vol.158
, pp. 617-624
-
-
Steger, K.1
Jarvis, A.2
Vasara, T.3
Romantschuk, M.4
Sundh, I.5
-
81
-
-
0030303324
-
Effects of composting on phytotoxicity of spent pigmanure sawdust litter
-
Tiquia SM, Tam NF, Hodgkiss IJ (1996) Effects of composting on phytotoxicity of spent pigmanure sawdust litter. Environ Pollut 93:249-256
-
(1996)
Environ Pollut
, vol.93
, pp. 249-256
-
-
Tiquia, S.M.1
Tam, N.F.2
Hodgkiss, I.J.3
-
82
-
-
20244376755
-
Comparative metagenomics of microbial communities
-
Tringe SG, von Mering C, Kobayashi A, Salamov AA, Chen K, Chang HW, Podar M, Short JM, Mathur EJ, Detter JC, Bork P, Hugenholtz P, Rubin EM (2005) Comparative metagenomics of microbial communities. Science 308:554-557
-
(2005)
Science
, vol.308
, pp. 554-557
-
-
Tringe, S.G.1
Von Mering, C.2
Kobayashi, A.3
Salamov, A.A.4
Chen, K.5
Chang, H.W.6
Podar, M.7
Short, J.M.8
Mathur, E.J.9
Detter, J.C.10
Bork, P.11
Hugenholtz, P.12
Rubin, E.M.13
-
84
-
-
0036304081
-
Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes
-
Valinsky L, Della Vedova G, Scupham AJ, Alvey S, Figueroa A, Yin B, Hartin RJ, Chrobak M, Crowley DE, Jiang T, Borneman J (2002) Analysis of bacterial community composition by oligonucleotide fingerprinting of rRNA genes. Appl Environ Microbiol 68:3243-3250
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3243-3250
-
-
Valinsky, L.1
Della Vedova, G.2
Scupham, A.J.3
Alvey, S.4
Figueroa, A.5
Yin, B.6
Hartin, R.J.7
Chrobak, M.8
Crowley, D.E.9
Jiang, T.10
Borneman, J.11
-
85
-
-
0029789623
-
A quantitative map of nucleotide substitution rates in bacterial rRNA
-
Van de Peer Y, Chapelle S, De Wachter R (1996) A quantitative map of nucleotide substitution rates in bacterial rRNA. Nucleic Acids Res 24:3381-3391
-
(1996)
Nucleic Acids Res
, vol.24
, pp. 3381-3391
-
-
Van De Peer, Y.1
Chapelle, S.2
De Wachter, R.3
-
86
-
-
84919730641
-
Sanitisation by composting
-
Insam H, Franke-Whittle IH, Goberna M eds, Springer, Heidelberg
-
Vinnerås B, Agostini F, Jönsson H (2010) Sanitisation by composting. In: Insam H, Franke-Whittle IH, Goberna M (eds) Microbes at work. From wastes to resources. Springer, Heidelberg, pp 171-192
-
(2010)
Microbes at Work. From Wastes to Resources
, pp. 171-192
-
-
Vinnerås, B.1
Agostini, F.2
Jönsson, H.3
-
87
-
-
51249194348
-
Über das vorkommen und verhalten von Schimmelpilzen bei der Kompstierung Städtischer Abfallstoffe
-
Von Klopotek A (1962) Über das vorkommen und verhalten von Schimmelpilzen bei der Kompstierung Städtischer Abfallstoffe. Antonie van Leeuvenhoek 28:141-160
-
(1962)
Antonie van Leeuvenhoek
, vol.28
, pp. 141-160
-
-
Von Klopotek, A.1
-
88
-
-
0031437239
-
Evolution of microbial and chemical parameters during manure and straw co-composting in a drum composting system
-
Vuorinen AH, Saharinen MH (1997) Evolution of microbial and chemical parameters during manure and straw co-composting in a drum composting system. Agric Ecosyst Environ 66:19-29
-
(1997)
Agric Ecosyst Environ
, vol.66
, pp. 19-29
-
-
Vuorinen, A.H.1
Saharinen, M.H.2
-
89
-
-
37449004398
-
Behaviour of pathogenic and indicator bacteria during urban wastewater treatment and sludge composting, as revealed by quantitative PCR
-
Wery N, Lhoutellier C, Ducray F, Delgenes JP, Godon JJ (2008) Behaviour of pathogenic and indicator bacteria during urban wastewater treatment and sludge composting, as revealed by quantitative PCR. Water Res 42:53-62
-
(2008)
Water Res
, vol.42
, pp. 53-62
-
-
Wery, N.1
Lhoutellier, C.2
Ducray, F.3
Delgenes, J.P.4
Godon, J.J.5
-
91
-
-
33746095025
-
Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification
-
Wu L, Liu X, Schadt CW, Zhou J (2006) Microarray-based analysis of subnanogram quantities of microbial community DNAs by using whole-community genome amplification. Appl Environ Microbiol 72:4931-4941
-
(2006)
Appl Environ Microbiol
, vol.72
, pp. 4931-4941
-
-
Wu, L.1
Liu, X.2
Schadt, C.W.3
Zhou, J.4
|