메뉴 건너뛰기




Volumn 7, Issue 9, 2012, Pages

Evolutionary Conservation of the Ribosomal Biogenesis Factor Rbm19/Mrd1: Implications for Function

Author keywords

[No Author keywords available]

Indexed keywords

RNA BINDING PROTEIN; RNA BINDING PROTEIN RBM19; UNCLASSIFIED DRUG;

EID: 84866334884     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0043786     Document Type: Article
Times cited : (10)

References (44)
  • 1
    • 0031860374 scopus 로고    scopus 로고
    • RNA recognition by RNP proteins during RNA processing
    • Varani G, Nagai K, (1998) RNA recognition by RNP proteins during RNA processing. Annu Rev Biophys Biomol Struct 27: 407-445.
    • (1998) Annu Rev Biophys Biomol Struct , vol.27 , pp. 407-445
    • Varani, G.1    Nagai, K.2
  • 2
    • 0033134643 scopus 로고    scopus 로고
    • Conservation of structure and cold-regulation of RNA-binding proteins in cyanobacteria: probable convergent evolution with eukaryotic glycine-rich RNA-binding proteins
    • Maruyama K, Sato N, Ohta N, (1999) Conservation of structure and cold-regulation of RNA-binding proteins in cyanobacteria: probable convergent evolution with eukaryotic glycine-rich RNA-binding proteins. Nucleic Acids Res 27: 2029-2036.
    • (1999) Nucleic Acids Res , vol.27 , pp. 2029-2036
    • Maruyama, K.1    Sato, N.2    Ohta, N.3
  • 4
    • 18544377013 scopus 로고    scopus 로고
    • The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression
    • Maris C, Dominguez C, Allain FH, (2005) The RNA recognition motif, a plastic RNA-binding platform to regulate post-transcriptional gene expression. FEBS J 272: 2118-2131.
    • (2005) FEBS J , vol.272 , pp. 2118-2131
    • Maris, C.1    Dominguez, C.2    Allain, F.H.3
  • 5
    • 33750222859 scopus 로고    scopus 로고
    • Sequence-specific binding of single-stranded RNA: is there a code for recognition?
    • Auweter SD, Oberstrass FC, Allain FH, (2006) Sequence-specific binding of single-stranded RNA: is there a code for recognition? Nucleic Acids Res 34: 4943-4959.
    • (2006) Nucleic Acids Res , vol.34 , pp. 4943-4959
    • Auweter, S.D.1    Oberstrass, F.C.2    Allain, F.H.3
  • 7
    • 29144503091 scopus 로고    scopus 로고
    • RNA-binding domain proteins in Kinetoplastids: a comparative analysis
    • De Gaudenzi J, Frasch AC, Clayton C, (2005) RNA-binding domain proteins in Kinetoplastids: a comparative analysis. Eukaryot Cell 4: 2106-2114.
    • (2005) Eukaryot Cell , vol.4 , pp. 2106-2114
    • De Gaudenzi, J.1    Frasch, A.C.2    Clayton, C.3
  • 8
    • 0037166353 scopus 로고    scopus 로고
    • Mrd1p is required for processing of pre-rRNA and for maintenance of steady-state levels of 40 S ribosomal subunits in yeast
    • Jin SB, Zhao J, Bjork P, Schmekel K, Ljungdahl PO, et al. (2002) Mrd1p is required for processing of pre-rRNA and for maintenance of steady-state levels of 40 S ribosomal subunits in yeast. J Biol Chem 277: 18431-18439.
    • (2002) J Biol Chem , vol.277 , pp. 18431-18439
    • Jin, S.B.1    Zhao, J.2    Bjork, P.3    Schmekel, K.4    Ljungdahl, P.O.5
  • 9
    • 70350542597 scopus 로고    scopus 로고
    • Mrd1p is required for release of base-paired U3 snoRNA within the preribosomal complex
    • Lundkvist P, Jupiter S, Segerstolpe A, Osheim YN, Beyer AL, et al. (2009) Mrd1p is required for release of base-paired U3 snoRNA within the preribosomal complex. Mol Cell Biol 29: 5763-5774.
    • (2009) Mol Cell Biol , vol.29 , pp. 5763-5774
    • Lundkvist, P.1    Jupiter, S.2    Segerstolpe, A.3    Osheim, Y.N.4    Beyer, A.L.5
  • 10
    • 48349140398 scopus 로고    scopus 로고
    • Mrd1p binds to pre-rRNA early during transcription independent of U3 snoRNA and is required for compaction of the pre-rRNA into small subunit processomes
    • Segerstolpe A, Lundkvist P, Osheim YN, Beyer AL, Wieslander L, (2008) Mrd1p binds to pre-rRNA early during transcription independent of U3 snoRNA and is required for compaction of the pre-rRNA into small subunit processomes. Nucleic Acids Res 36: 4364-4380.
    • (2008) Nucleic Acids Res , vol.36 , pp. 4364-4380
    • Segerstolpe, A.1    Lundkvist, P.2    Osheim, Y.N.3    Beyer, A.L.4    Wieslander, L.5
  • 11
    • 79960890612 scopus 로고    scopus 로고
    • Downregulation of pre-rRNA processing gene Mamrd1 decreases growth, conidiation and virulence in the entomopathogenic fungus Metarhizium acridum
    • Cao Y, Li K, Xia Y, (2011) Downregulation of pre-rRNA processing gene Mamrd1 decreases growth, conidiation and virulence in the entomopathogenic fungus Metarhizium acridum. Res Microbiol 162: 729-736.
    • (2011) Res Microbiol , vol.162 , pp. 729-736
    • Cao, Y.1    Li, K.2    Xia, Y.3
  • 12
    • 2342540346 scopus 로고    scopus 로고
    • RBD-1, a nucleolar RNA-binding protein, is essential for Caenorhabditis elegans early development through 18S ribosomal RNA processing
    • Saijou E, Fujiwara T, Suzaki T, Inoue K, Sakamoto H, (2004) RBD-1, a nucleolar RNA-binding protein, is essential for Caenorhabditis elegans early development through 18S ribosomal RNA processing. Nucleic Acids Res 32: 1028-1036.
    • (2004) Nucleic Acids Res , vol.32 , pp. 1028-1036
    • Saijou, E.1    Fujiwara, T.2    Suzaki, T.3    Inoue, K.4    Sakamoto, H.5
  • 13
    • 0036799699 scopus 로고    scopus 로고
    • A novel conserved RNA-binding domain protein, RBD-1, is essential for ribosome biogenesis
    • Bjork P, Bauren G, Jin S, Tong YG, Burglin TR, et al. (2002) A novel conserved RNA-binding domain protein, RBD-1, is essential for ribosome biogenesis. Mol Biol Cell 13: 3683-3695.
    • (2002) Mol Biol Cell , vol.13 , pp. 3683-3695
    • Bjork, P.1    Bauren, G.2    Jin, S.3    Tong, Y.G.4    Burglin, T.R.5
  • 14
    • 0042829353 scopus 로고    scopus 로고
    • Nil per os encodes a conserved RNA recognition motif protein required for morphogenesis and cytodifferentiation of digestive organs in zebrafish
    • Mayer AN, Fishman MC, (2003) Nil per os encodes a conserved RNA recognition motif protein required for morphogenesis and cytodifferentiation of digestive organs in zebrafish. Development 130: 3917-3928.
    • (2003) Development , vol.130 , pp. 3917-3928
    • Mayer, A.N.1    Fishman, M.C.2
  • 15
    • 29244491971 scopus 로고    scopus 로고
    • Rbm19 is a nucleolar protein expressed in crypt/progenitor cells of the intestinal epithelium
    • Lorenzen JA, Bonacci BB, Palmer RE, Wells C, Zhang J, et al. (2005) Rbm19 is a nucleolar protein expressed in crypt/progenitor cells of the intestinal epithelium. Gene Expr Patterns 6: 45-56.
    • (2005) Gene Expr Patterns , vol.6 , pp. 45-56
    • Lorenzen, J.A.1    Bonacci, B.B.2    Palmer, R.E.3    Wells, C.4    Zhang, J.5
  • 16
    • 58249109766 scopus 로고    scopus 로고
    • RBM19 is essential for preimplantation development in the mouse
    • Zhang J, Tomasini AJ, Mayer AN, (2008) RBM19 is essential for preimplantation development in the mouse. BMC Dev Biol 8: 115.
    • (2008) BMC Dev Biol , vol.8 , pp. 115
    • Zhang, J.1    Tomasini, A.J.2    Mayer, A.N.3
  • 17
    • 0027753933 scopus 로고
    • Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors
    • Birney E, Kumar S, Krainer AR, (1993) Analysis of the RNA-recognition motif and RS and RGG domains: conservation in metazoan pre-mRNA splicing factors. Nucleic Acids Res 21: 5803-5816.
    • (1993) Nucleic Acids Res , vol.21 , pp. 5803-5816
    • Birney, E.1    Kumar, S.2    Krainer, A.R.3
  • 18
    • 0029433334 scopus 로고
    • Crystal structure of the U1A spliceosomal protein complexed with its cognate RNA hairpin
    • Nagai K, Oubridge C, Ito N, Jessen TH, Avis J, et al. (1995) Crystal structure of the U1A spliceosomal protein complexed with its cognate RNA hairpin. Nucleic Acids Symp Ser pp. 1-2.
    • (1995) Nucleic Acids Symp Ser , pp. 1-2
    • Nagai, K.1    Oubridge, C.2    Ito, N.3    Jessen, T.H.4    Avis, J.5
  • 20
    • 10944267609 scopus 로고    scopus 로고
    • A surfeit of factors: why is ribosome assembly so much more complicated in eukaryotes than bacteria?
    • Hage AE, Tollervey D, (2004) A surfeit of factors: why is ribosome assembly so much more complicated in eukaryotes than bacteria? RNA Biol 1: 10-15.
    • (2004) RNA Biol , vol.1 , pp. 10-15
    • Hage, A.E.1    Tollervey, D.2
  • 21
    • 34249316905 scopus 로고    scopus 로고
    • RNA-binding proteins: modular design for efficient function
    • Lunde BM, Moore C, Varani G, (2007) RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol 8: 479-490.
    • (2007) Nat Rev Mol Cell Biol , vol.8 , pp. 479-490
    • Lunde, B.M.1    Moore, C.2    Varani, G.3
  • 22
    • 84856569717 scopus 로고    scopus 로고
    • A single ancient origin for prototypical serine/arginine-rich splicing factors
    • Califice S, Baurain D, Hanikenne M, Motte P, (2012) A single ancient origin for prototypical serine/arginine-rich splicing factors. Plant Physiol 158: 546-560.
    • (2012) Plant Physiol , vol.158 , pp. 546-560
    • Califice, S.1    Baurain, D.2    Hanikenne, M.3    Motte, P.4
  • 23
    • 20844460290 scopus 로고    scopus 로고
    • Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly
    • Sharma MR, Barat C, Wilson DN, Booth TM, Kawazoe M, et al. (2005) Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly. Mol Cell 18: 319-329.
    • (2005) Mol Cell , vol.18 , pp. 319-329
    • Sharma, M.R.1    Barat, C.2    Wilson, D.N.3    Booth, T.M.4    Kawazoe, M.5
  • 24
    • 35649008817 scopus 로고    scopus 로고
    • Structural aspects of RbfA action during small ribosomal subunit assembly
    • Datta PP, Wilson DN, Kawazoe M, Swami NK, Kaminishi T, et al. (2007) Structural aspects of RbfA action during small ribosomal subunit assembly. Mol Cell 28: 434-445.
    • (2007) Mol Cell , vol.28 , pp. 434-445
    • Datta, P.P.1    Wilson, D.N.2    Kawazoe, M.3    Swami, N.K.4    Kaminishi, T.5
  • 25
    • 0035957922 scopus 로고    scopus 로고
    • Two different combinations of RNA-binding domains determine the RNA binding specificity of nucleolin
    • Ginisty H, Amalric F, Bouvet P, (2001) Two different combinations of RNA-binding domains determine the RNA binding specificity of nucleolin. J Biol Chem 276: 14338-14343.
    • (2001) J Biol Chem , vol.276 , pp. 14338-14343
    • Ginisty, H.1    Amalric, F.2    Bouvet, P.3
  • 26
    • 0028907506 scopus 로고
    • Multiple RNA binding domains (RBDs) just don't add up
    • Shamoo Y, Abdul-Manan N, Williams KR, (1995) Multiple RNA binding domains (RBDs) just don't add up. Nucleic Acids Res 23: 725-728.
    • (1995) Nucleic Acids Res , vol.23 , pp. 725-728
    • Shamoo, Y.1    Abdul-Manan, N.2    Williams, K.R.3
  • 27
    • 84861634017 scopus 로고    scopus 로고
    • Mapping the cleavage sites on mammalian pre-rRNAs: Where do we stand?
    • Mullineux ST, Lafontaine DL, (2012) Mapping the cleavage sites on mammalian pre-rRNAs: Where do we stand? Biochimie.
    • (2012) Biochimie
    • Mullineux, S.T.1    Lafontaine, D.L.2
  • 28
    • 0032145384 scopus 로고    scopus 로고
    • Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core
    • Peyretaillade E, Biderre C, Peyret P, Duffieux F, Metenier G, et al. (1998) Microsporidian Encephalitozoon cuniculi, a unicellular eukaryote with an unusual chromosomal dispersion of ribosomal genes and a LSU rRNA reduced to the universal core. Nucleic Acids Res 26: 3513-3520.
    • (1998) Nucleic Acids Res , vol.26 , pp. 3513-3520
    • Peyretaillade, E.1    Biderre, C.2    Peyret, P.3    Duffieux, F.4    Metenier, G.5
  • 29
    • 0031278940 scopus 로고    scopus 로고
    • The rDNA unit of Encephalitozoon cuniculi (Microsporidia): complete 23S sequence and copy number
    • Biderre C, Peyretaillade E, Duffieux F, Peyret P, Metenier G, et al. (1997) The rDNA unit of Encephalitozoon cuniculi (Microsporidia): complete 23S sequence and copy number. J Eukaryot Microbiol 44: 76S.
    • (1997) J Eukaryot Microbiol , vol.44
    • Biderre, C.1    Peyretaillade, E.2    Duffieux, F.3    Peyret, P.4    Metenier, G.5
  • 30
    • 0032014816 scopus 로고    scopus 로고
    • The ribosomal RNA gene region of Nosema apis (Microspora): DNA sequence for small and large subunit rRNA genes and evidence of a large tandem repeat unit size
    • Gatehouse HS, Malone LA, (1998) The ribosomal RNA gene region of Nosema apis (Microspora): DNA sequence for small and large subunit rRNA genes and evidence of a large tandem repeat unit size. J Invertebr Pathol 71: 97-105.
    • (1998) J Invertebr Pathol , vol.71 , pp. 97-105
    • Gatehouse, H.S.1    Malone, L.A.2
  • 31
    • 0027297918 scopus 로고
    • Secondary structure of the small subunit ribosomal RNA sequence of the microsporidium Encephalitozoon cuniculi
    • Hartskeerl RA, Schuitema AR, deWachter R, (1993) Secondary structure of the small subunit ribosomal RNA sequence of the microsporidium Encephalitozoon cuniculi. Nucleic Acids Res 21: 1489.
    • (1993) Nucleic Acids Res , vol.21 , pp. 1489
    • Hartskeerl, R.A.1    Schuitema, A.R.2    deWachter, R.3
  • 33
    • 30444446153 scopus 로고    scopus 로고
    • Molecular basis of RNA recognition by the human alternative splicing factor Fox-1
    • Auweter SD, Fasan R, Reymond L, Underwood JG, Black DL, et al. (2006) Molecular basis of RNA recognition by the human alternative splicing factor Fox-1. EMBO J 25: 163-173.
    • (2006) EMBO J , vol.25 , pp. 163-173
    • Auweter, S.D.1    Fasan, R.2    Reymond, L.3    Underwood, J.G.4    Black, D.L.5
  • 34
    • 77953261028 scopus 로고    scopus 로고
    • Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3′-end processing factors
    • Pancevac C, Goldstone DC, Ramos A, Taylor IA, (2010) Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3′-end processing factors. Nucleic Acids Res 38: 3119-3132.
    • (2010) Nucleic Acids Res , vol.38 , pp. 3119-3132
    • Pancevac, C.1    Goldstone, D.C.2    Ramos, A.3    Taylor, I.A.4
  • 35
    • 34247241059 scopus 로고    scopus 로고
    • Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit
    • ElAntak L, Tzakos AG, Locker N, Lukavsky PJ, (2007) Structure of eIF3b RNA recognition motif and its interaction with eIF3j: structural insights into the recruitment of eIF3b to the 40 S ribosomal subunit. J Biol Chem 282: 8165-8174.
    • (2007) J Biol Chem , vol.282 , pp. 8165-8174
    • ElAntak, L.1    Tzakos, A.G.2    Locker, N.3    Lukavsky, P.J.4
  • 36
    • 33747085899 scopus 로고    scopus 로고
    • NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition
    • Dominguez C, Allain FH, (2006) NMR structure of the three quasi RNA recognition motifs (qRRMs) of human hnRNP F and interaction studies with Bcl-x G-tract RNA: a novel mode of RNA recognition. Nucleic Acids Res 34: 3634-3645.
    • (2006) Nucleic Acids Res , vol.34 , pp. 3634-3645
    • Dominguez, C.1    Allain, F.H.2
  • 37
    • 13744252890 scopus 로고    scopus 로고
    • MAFFT version 5: improvement in accuracy of multiple sequence alignment
    • Katoh K, Kuma K, Toh H, Miyata T, (2005) MAFFT version 5: improvement in accuracy of multiple sequence alignment. Nucleic Acids Res 33: 511-518.
    • (2005) Nucleic Acids Res , vol.33 , pp. 511-518
    • Katoh, K.1    Kuma, K.2    Toh, H.3    Miyata, T.4
  • 39
    • 0033753685 scopus 로고    scopus 로고
    • Visualizing large hierarchical clusters in hyperbolic space
    • Bingham J, Sudarsanam S, (2000) Visualizing large hierarchical clusters in hyperbolic space. Bioinformatics 16: 660-661.
    • (2000) Bioinformatics , vol.16 , pp. 660-661
    • Bingham, J.1    Sudarsanam, S.2
  • 40
    • 0020997912 scopus 로고
    • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features
    • Kabsch W, Sander C, (1983) Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features. Biopolymers 22: 2577-2637.
    • (1983) Biopolymers , vol.22 , pp. 2577-2637
    • Kabsch, W.1    Sander, C.2
  • 42
    • 44349150513 scopus 로고    scopus 로고
    • OnD-CRF: predicting order and disorder in proteins using [corrected] conditional random fields
    • Wang L, Sauer UH, (2008) OnD-CRF: predicting order and disorder in proteins using [corrected] conditional random fields. Bioinformatics 24: 1401-1402.
    • (2008) Bioinformatics , vol.24 , pp. 1401-1402
    • Wang, L.1    Sauer, U.H.2
  • 43
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine MS, McKenzie A 3rd, Demarini DJ, Shah NG, Wach A, et al. (1998) Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 14: 953-961.
    • (1998) Yeast , vol.14 , pp. 953-961
    • Longtine, M.S.1    McKenzie 3rd, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5
  • 44
    • 0026030414 scopus 로고
    • Preparation and analysis of low molecular weight RNAs and small ribonucleoproteins
    • Wise JA, (1991) Preparation and analysis of low molecular weight RNAs and small ribonucleoproteins. Methods Enzymol 194: 405-415.
    • (1991) Methods Enzymol , vol.194 , pp. 405-415
    • Wise, J.A.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.