Permissive and restricted virus infection of murine embryonic stem cells

Journal of General Virology

Volumn 93, Issue PART 10, 2012, Pages 2118-2130

  Wash, Rachael ^a   Calabressi, Sabrina ^a   Franz, Stephanie ^a   Griffiths, Samantha J ^b   Goulding, David ^a   Tan, E Pien ^a   Wise, Helen ^c,e   Digard, Paul ^c,e   Haas, Jürgen ^b   Efstathiou, Stacey ^c   Kellam, Paul ^a,d  

^a WELLCOME TRUST SANGER INSTITUTE   (United Kingdom)

^b UNIVERSITY OF EDINBURGH   (United Kingdom)

^c UNIVERSITY OF CAMBRIDGE   (United Kingdom)

^d UNIVERSITY COLLEGE LONDON   (United Kingdom)

^e UNIVERSITY OF EDINBURGH   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

INFECTED CELL PROTEIN 8;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CONTROLLED STUDY; EMBRYO; EMBRYONIC STEM CELL; HERPES SIMPLEX; HERPES SIMPLEX VIRUS 1; HOST RESISTANCE; INFLUENZA A; INFLUENZA VIRUS A; INNATE IMMUNITY; MOUSE; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; VIRUS CELL INTERACTION; VIRUS REPLICATION; VIRUS TRANSCRIPTION;

ANIMALS; CELL LINE; CRICETINAE; DNA REPLICATION; DOGS; EMBRYONIC STEM CELLS; HELA CELLS; HERPES SIMPLEX; HERPESVIRUS 1, HUMAN; HOST-PATHOGEN INTERACTIONS; HUMANS; INFLUENZA A VIRUS; MICE; MICE, INBRED C57BL; MICE, KNOCKOUT; ORTHOMYXOVIRIDAE INFECTIONS; RNA, SMALL INTERFERING; TRANSCRIPTION, GENETIC; VIRAL PROTEINS; VIRUS REPLICATION;

HUMAN HERPESVIRUS 1; INFLUENZA A VIRUS; MURINAE; MUS; ORTHOMYXOVIRIDAE;

EID: 84866328938     PISSN: 00221317     EISSN: 14652099     Source Type: Journal    
DOI: 10.1099/vir.0.043406-0     Document Type: Article

References (55)

1. Arthur, J. L., Scarpini, C. G., Connor, V., Lachmann, R. H., Tolkovsky, A. M. & Efstathiou, S. (2001). Herpes simplex virus type 1 promoter activity during latency establishment, maintenance, and reactivation in primary dorsal root neurons in vitro. J Virol 75, 3885-3895.
2. Atwood, J. A., III, Cheng, L., Alvarez-Manilla, G., Warren, N. L., York, W. S. & Orlando, R. (2008). Quantitation by isobaric labeling: applications to glycomics. J Proteome Res 7, 367-374.
3. Austin, C. P., Battey, J. F., Bradley, A., Bucan, M., Capecchi, M., Collins, F. S., Dove, W. F., Duyk, G., Dymecki, S. & other authors (2004). The Knockout Mouse Project. Nat Genet 36, 921-924.
4. Bartz, S. & Jackson, A. L. (2005). How will RNAi facilitate drug development? Sci STKE 2005, pe39.
5. Bibel, M., Richter, J., Schrenk, K., Tucker, K. L., Staiger, V., Korte, M., Goetz, M. & Barde, Y. A. (2004). Differentiation of mouse embryonic stem cells into a defined neuronal lineage. Nat Neurosci 7, 1003-1009.
6. Bolovan, C. A., Sawtell, N. M. & Thompson, R. L. (1994). ICP34.5 mutants of herpes simplex virus type 1 strain 17syn+ are attenuated for neurovirulence in mice and for replication in confluent primary mouse embryo cell cultures. J Virol 68, 48-55.
7. Boon, A. C., Finkelstein, D., Zheng, M., Liao, G., Allard, J., Klumpp, K., Webster, R., Peltz, G. & Webby, R. J. (2011). H5N1 influenza virus pathogenesis in genetically diverse mice is mediated at the level of viral load. MBio 2, e00171-11.
8. Brass, A. L., Dykxhoorn, D. M., Benita, Y., Yan, N., Engelman, A., Xavier, R. J., Lieberman, J. & Elledge, S. J. (2008). Identification of host proteins required for HIV infection through a functional genomic screen. Science 319, 921-926.
9. Brass, A. L., Huang, I.-C., Benita, Y., John, S. P., Krishnan, M. N., Feeley, E. M., Ryan, B. J., Weyer, J. L., van der Weyden, L. & other authors (2009). The IFITM proteins mediate cellular resistance to influenza A H1N1 virus, West Nile virus, and dengue virus. Cell 139, 1243-1254.
10. Carette, J. E., Guimaraes, C. P., Varadarajan, M., Park, A. S., Wuethrich, I., Godarova, A., Kotecki, M., Cochran, B. H., Spooner, E. & other authors (2009). Haploid genetic screens in human cells identify host factors used by pathogens. Science 326, 1231-1235.
11. Carrasco, M., Amorim, M. J. & Digard, P. (2004). Lipid raft-dependent targeting of the influenza A virus nucleoprotein to the apical plasma membrane. Traffic 5, 979-992.
12. Cheshenko, N., Del Rosario, B., Woda, C., Marcellino, D., Satlin, L. M. & Herold, B. C. (2003). Herpes simplex virus triggers activation of calcium-signaling pathways. J Cell Biol 163, 283-293.
13. Cheshenko, N., Liu, W., Satlin, L. M. & Herold, B. C. (2007). Multiple receptor interactions trigger release of membrane and intracellular calcium stores critical for herpes simplex virus entry. Mol Biol Cell 18, 3119-3130.
14. Chinwalla, A. T., Cook, L. L., Delehaunty, K. D., Fewell, G. A., Fulton, L. A., Fulton, R. S., Graves, T. A., Hillier, L. D. W., Mardis, E. R. & other authors (2002). Initial sequencing and comparative analysis of the mouse genome. Nature 420, 520-562.
15. Deshpande, S. P., Kumaraguru, U. & Rouse, B. T. (2000). Why do we lack an effective vaccine against herpes simplex virus infections? Microbes Infect 2, 973-978.
16. Devogelaere, B., Sammels, E. & De Smedt, H. (2008). The IRBIT domain adds new functions to the AHCY family. Bioessays 30, 642-652.
17. Fairchild, P. J., Brook, F. A., Gardner, R. L., Graça, L., Strong, V., Tone, Y., Tone, M., Nolan, K. F. & Waldmann, H. (2000). Directed differentiation of dendritic cells from mouse embryonic stem cells. Curr Biol 10, 1515-1518.
18. Földes, G., Liu, A., Badiger, R., Paul-Clark, M., Moreno, L., Lendvai, Z., Wright, J. S., Ali, N. N., Harding, S. E. & Mitchell, J. A. (2010). Innate immunity in human embryonic stem cells: comparison with adult human endothelial cells. PLoS ONE 5, e10501.
19. Geiss, G. K., An, M. C., Bumgarner, R. E., Hammersmark, E., Cunningham, D. & Katze, M. G. (2001). Global impact of influenza virus on cellular pathways is mediated by both replication-dependent and-independent events. J Virol 75, 4321-4331.
20. Goto, H. & Kawaoka, Y. (1998). A novel mechanism for the acquisition of virulence by a human influenza A virus. Proc Natl Acad Sci U S A 95, 10224-10228.
21. Hao, L., Sakurai, A., Watanabe, T., Sorensen, E., Nidom, C. A., Newton, M. A., Ahlquist, P. & Kawaoka, Y. (2008). Drosophila RNAi screen identifies host genes important for influenza virus replication. Nature 454, 890-893.
22. Herold, B. C., WuDunn, D., Soltys, N. & Spear, P. G. (1991). Glycoprotein C of herpes simplex virus type 1 plays a principal role in the adsorption of virus to cells and in infectivity. J Virol 65, 1090-1098.
23. Hoffmann, H. H., Kunz, A., Simon, V. A., Palese, P. & Shaw, M. L. (2011). Broad-spectrum antiviral that interferes with de novo pyrimidine biosynthesis. Proc Natl Acad Sci U S A 108, 5777-5782.
24. Huang, W., Sherman, B. T. & Lempicki, R. A. (2008). Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc 4, 44-57.
25. Huang, W., Sherman, B. T. & Lempicki, R. A. (2009). Bioinformatics enrichment tools: paths toward the comprehensive functional analysis of large gene lists. Nucleic Acids Res 37, 1-13.
26. Hutchinson, E. C., Curran, M. D., Read, E. K., Gog, J. R. & Digard, P. (2008). Mutational analysis of cis-acting RNA signals in segment 7 of influenza A virus. J Virol 82, 11869-11879.
27. Kamakura, M., Nawa, A., Ushijima, Y., Goshima, F., Kawaguchi, Y., Kikkawa, F. & Nishiyama, Y. (2008). Microarray analysis of transcriptional responses to infection by herpes simplex virus types 1 and 2 and their US3-deficient mutants. Microbes Infect 10, 405-413.
28. Karlas, A., Machuy, N., Shin, Y., Pleissner, K. P., Artarini, A., Heuer, D., Becker, D., Khalil, H., Ogilvie, L. A. & other authors (2010). Genome-wide RNAi screen identifies human host factors crucial for influenza virus replication. Nature 463, 818-822.
29. Keane, T. M., Goodstadt, L., Danecek, P., White, M. A., Wong, K., Yalcin, B., Heger, A., Agam, A., Slater, G. & other authors (2011). Mouse genomic variation and its effect on phenotypes and gene regulation. Nature 477, 289-294.
30. König, R., Stertz, S., Zhou, Y., Inoue, A., Hoffmann, H. H., Bhattacharyya, S., Alamares, J. G., Tscherne, D. M., Ortigoza, M. B. & other authors (2010). Human host factors required for influenza virus replication. Nature 463, 813-817.
31. Krishnan, M. N., Ng, A., Sukumaran, B., Gilfoy, F. D., Uchil, P. D., Sultana, H., Brass, A. L., Adametz, R., Tsui, M. & other authors (2008). RNA interference screen for human genes associated with West Nile virus infection. Nature 455, 242-245.
32. Li, M. A., Pettitt, S. J., Yusa, K. & Bradley, A. (2010). Genome-wide forward genetic screens in mouse ES cells. Methods Enzymol 477, 217-242.
33. Matrosovich, M., Matrosovich, T., Garten, W. & Klenk, H. D. (2006). New low-viscosity overlay medium for viral plaque assays. Virol J 3, 63.
34. Matsuoka, Y., Lamirande, E. W. & Subbarao, K. (2009). The mouse model for influenza. Curr Protoc Microbiol Chapter 15, Unit 15G.3.
35. Mester, J. C. & Rouse, B. T. (1991). The mouse model and understanding immunity to herpes simplex virus. Rev Infect Dis 13 (Suppl. 11), S935-S945.
36. Pasieka, T. J., Baas, T., Carter, V. S., Proll, S. C., Katze, M. G. & Leib, D. A. (2006). Functional genomic analysis of herpes simplex virus type 1 counteraction of the host innate response. J Virol 80, 7600-7612.
37. Saeed, A. I., Sharov, V., White, J., Li, J., Liang, W., Bhagabati, N., Braisted, J., Klapa, M., Currier, T. & other authors (2003). TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34, 374-378.
38. Saeed, A. I., Bhagabati, N. K., Braisted, J. C., Liang, W., Sharov, V., Howe, E. A., Li, J., Thiagarajan, M., White, J. A. & Quackenbush, J. (2006). TM4 microarray software suite. Methods Enzymol 411, 134-193.
39. Samarajiwa, S. A., Forster, S., Auchettl, K. & Hertzog, P. J. (2009). INTERFEROME: the database of interferon regulated genes. Nucleic Acids Res 37 (Database issue), D852-D857.
40. Satomaa, T., Heiskanen, A., Mikkola, M., Olsson, C., Blomqvist, M., Tiittanen, M., Jaatinen, T., Aitio, O., Olonen, A. & other authors (2009). The N-glycome of human embryonic stem cells. BMC Cell Biol 10, 42.
41. Scassa, M. E., Jaquenod de Giusti, C., Questa, M., Pretre, G., Richardson, G. A., Bluguermann, C., Romorini, L., Ferrer, M. F., Sevlever, G. E. & other authors (2011). Human embryonic stem cells and derived contractile embryoid bodies are susceptible to coxsakievirus B infection and respond to interferon Ib treatment. Stem Cell Res (Amst) 6, 13-22.
42. Schoenbaum, S. C. (2001). The impact of pandemic influenza, with special reference to 1918. Int Congr Ser 1219, 43-51.
43. Shinya, K., Hamm, S., Hatta, M., Ito, H., Ito, T. & Kawaoka, Y. (2004). PB2 amino acid at position 627 affects replicative efficiency, but not cell tropism, of Hong Kong H5N1 influenza A viruses in mice. Virology 320, 258-266.
44. Skarnes, W. C., Rosen, B., West, A. P., Koutsourakis, M., Bushell, W., Iyer, V., Mujica, A. O., Thomas, M., Harrow, J. & other authors (2011). A conditional knockout resource for the genome-wide study of mouse gene function. Nature 474, 337-342.
45. Soto-Gutiérrez, A., Navarro-Alvarez, N., Zhao, D., Rivas-Carrillo, J. D., Lebkowski, J., Tanaka, N., Fox, I. J. & Kobayashi, N. (2007). Differentiation of mouse embryonic stem cells to hepatocyte-like cells by co-culture with human liver nonparenchymal cell lines. Nat Protoc 2, 347-356.
46. Szutorisz, H., Georgiou, A., Tora, L. & Dillon, N. (2006). The proteasome restricts permissive transcription at tissue-specific gene loci in embryonic stem cells. Cell 127, 1375-1388.
47. Tate, P. H. & Skarnes, W. C. (2011). Bi-allelic gene targeting in mouse embryonic stem cells. Methods 53, 331-338.
48. Wagner, R., Wolff, T., Herwig, A., Pleschka, S. & Klenk, H. D. (2000). Interdependence of hemagglutinin glycosylation and neuraminidase as regulators of influenza virus growth: a study by reverse genetics. J Virol 74, 6316-6323.
49. Wang, W. & Bradley, A. (2007). A recessive genetic screen for host factors required for retroviral infection in a library of insertionally mutated Blm-deficient embryonic stem cells. Genome Biol 8, R48.
50. Ward, A. C. (1996). Neurovirulence of influenza A virus. J Neurovirol 2, 139-151.
51. Watanabe, T., Watanabe, S. & Kawaoka, Y. (2010). Cellular networks involved in the influenza virus life cycle. Cell Host Microbe 7, 427-439.
52. Wenske, E. A. & Courtney, R. J. (1983). Glycosylation of herpes simplex virus type 1 gC in the presence of tunicamycin. J Virol 46, 297-301.
53. Yalcin, B., Wong, K., Agam, A., Goodson, M., Keane, T. M., Gan, X., Nellåker, C., Goodstadt, L., Nicod, J. & other authors (2011). Sequence-based characterization of structural variation in the mouse genome. Nature 477, 326-329.
54. Yu, J., Rossi, R., Hale, C., Goulding, D. & Dougan, G. (2009). Interaction of enteric bacterial pathogens with murine embryonic stem cells. Infect Immun 77, 585-597.
55. Zhou, H., Xu, M., Huang, Q., Gates, A. T., Zhang, X. D., Castle, J. C., Stec, E., Ferrer, M., Strulovici, B. & other authors (2008). Genomescale RNAi screen for host factors required for HIV replication. Cell Host Microbe 4, 495-504.