Correction of vibration artifacts in DTI using phase-encoding reversal (COVIPER)

Magnetic Resonance in Medicine

Volumn 68, Issue 3, 2012, Pages 882-889

  Mohammadi, Siawoosh ^a   Nagy, Zoltan ^a   Hutton, Chloe ^a   Josephs, Oliver ^a   Weiskopf, Nikolaus ^a  

^a UNIVERSITY COLLEGE LONDON   (United Kingdom)

Author keywords

blip up blip down; k space echo shift; partial Fourier imaging; table vibration

Indexed keywords

CLINICAL RESEARCH; CLUSTERING ALGORITHMS; DIFFUSION; EDDY CURRENTS; ENCODING (SYMBOLS); IMAGE CODING; MAGNETIC RESONANCE IMAGING; SIGNAL ENCODING; TENSORS;

ARTIFACT REDUCTION; BLIP-UP BLIP-DOWN; CLINICAL APPLICATION; DIFFUSION GRADIENTS; FRACTIONAL ANISOTROPY; K SPACE; PARTIAL-FOURIER; TABLE VIBRATION;

DIFFUSION TENSOR IMAGING;

ARTICLE; ARTIFACT REDUCTION; DATA ANALYSIS; DIFFUSION TENSOR IMAGING; FEMALE; HUMAN; IMAGE ANALYSIS; MALE; METHODOLOGY; MOTION; NORMAL HUMAN; NUCLEAR MAGNETIC RESONANCE IMAGING; NUCLEAR MAGNETIC RESONANCE SCANNER; VELOCITY; VIBRATION;

EID: 84865452189     PISSN: 07403194     EISSN: 15222594     Source Type: Journal    
DOI: 10.1002/mrm.23308     Document Type: Article

References (60)

1. Le Bihan D, Breton E, Lallemand D, Grenier P, Cabanis E, Laval-Jeantet M,. MR imaging of intravoxel incoherent motions: application to diffusion and perfusion in neurologic disorders. Radiology 1986; 161: 401-407. (Pubitemid 17173295)
2. Turner R, Le Bihan D, Maier J, Vavrek R, Hedges LK, Pekar J,. Echo-planar imaging of intravoxel incoherent motion. Radiology 1990; 177: 407-414. (Pubitemid 20374857)
3. Basser PJ, Mattiello J, LeBihan D,. MR diffusion tensor spectroscopy and imaging. Biophys J 1994; 66: 259-267. (Pubitemid 24016507)
4. Pierpaoli C, Basser PJ,. Toward a quantitative assessment of diffusion anisotropy. Magn Reson Med 1996; 36: 893-906. (Pubitemid 26396817)
5. Johansen-Berg H, Rushworth MFS,. Using diffusion imaging to study human connectional anatomy. Annu Rev Neurosci 2009; 32: 75-94.
6. Solano-Castiella E, Anwander A, Lohmann G, Weiss M, Docherty C, Geyer S, Reimer E, Friederici AD, Turner R,. Diffusion tensor imaging segments the human amygdala in vivo. Neuroimage 2010; 49: 2958-2965.
7. Bach DR, Behrens TE, Garrido L, Weiskopf N, Dolan RJ,. Deep and superficial amygdala nuclei projections revealed in vivo by probabilistic tractography. J Neurosci 2011; 31: 618-623.
8. Draganski B, Ashburner J, Hutton C, Kherif F, Frackowiak RSJ, Helms G, Weiskopf N,. Regional specificity of MRI contrast parameter changes in normal ageing revealed by voxel-based quantification (VBQ). Neuroimage 2011; 55: 1423-1434.
9. Mueller K, Anwander A, Möller HE, Horstmann A, Lepsien J, Busse F, Mohammadi S, Schroeter ML, Stumvoll M, Villringer A, Pleger B,. Sex-Dependent Influences of Obesity on Cerebral White Matter Investigated by Diffusion-Tensor Imaging. PLoS ONE 2011, e18544. doi:10.1371/journal.pone.0018544.
10. Deppe M, Kellinghaus C, Duning T, Möddel G, Mohammadi S, Deppe K, Schiffbauer H, Kugel H, Keller SS, Ringelstein EB, Knecht S,. Nerve fiber impairment of anterior thalamocortical circuitry in juvenile myoclonic epilepsy. Neurology 2008; 71: 1981-1985.
11. Anneken K, Evers S, Mohammadi S, Schwindt W, Deppe M,. Transient lesion in the splenium related to antiepileptic drug: case report and new pathophysiological insights. Seizure 2008; 17: 654-657.
12. Keller SS, Ahrens T, Mohammadi S, Möddel G, Kugel H, Bernd Ringelstein E, Deppe M,. Microstructural and volumetric abnormalities of the putamen in juvenile myoclonic epilepsy. Epilepsia 2011; 52: 1715-1724.
13. Kleffner I, Deppe M, Mohammadi S, Schiffbauer H, Stupp N, Lohmann H, Young P, Ringelstein EB,. Diffusion tensor imaging demonstrates fiber impairment in Susac syndrome. Neurology 2008; 70: 1867-1869. (Pubitemid 351653960)
14. Kovac S, Deppe M, Mohammadi S, Schiffbauer H, Schwindt W, Möddel G, Dogan M, Evers S,. Gelastic seizures: a case of lateral frontal lobe epilepsy and review of the literature. Epilepsy Behav 2009; 15: 249-253.
15. Meinzer M, Mohammadi S, Kugel H, Schiffbauer H, Flöel A, Albers J, Kramer K, Menke R, Baumgärtner A, Knecht S, Breitenstein C, Deppe M,. Integrity of the hippocampus and surrounding white matter is correlated with language training success in aphasia. Neuroimage 2010; 53: 283-290.
16. Wersching H, Duning T, Lohmann H, Mohammadi S, Stehling C, Fobker M, Conty M, Minnerup J, Ringelstein EB, Berger K, Deppe M, Knecht S,. Serum C-reactive protein is linked to cerebral microstructural integrity and cognitive function. Neurology 2010; 74: 1022-1029.
17. Bammer R, Skare S, Newbould R, Liu C, Thijs V, Ropele S, Clayton DB, Krueger G, Moseley ME, Glover GH,. Foundations of advanced magnetic resonance imaging. NeuroRx 2005; 2: 167-196. (Pubitemid 40471431)
18. Le Bihan D, Poupon C, Amadon A, Lethimonnier F,. Artifacts and pitfalls in diffusion MRI. J Magn Reson Imaging 2006; 24: 478-488. (Pubitemid 44320549)
19. Jones DK, Cercignani M,. Twenty-five pitfalls in the analysis of diffusion MRI data. NMR Biomed 2010; 23: 803-820.
20. Tournier J-D, Mori S, Leemans A,. Diffusion tensor imaging and beyond. Magn Reson Med 2011; 65: 1532-1556.
21. Nunes RG, Jezzard P, Clare S,. Investigations on the efficiency of cardiac-gated methods for the acquisition of diffusion-weighted images. J Magn Reson (San Diego, Calif.: 1997) 2005; 177: 102-110. (Pubitemid 41336669)
22. Skare S, Andersson JL,. On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn Reson Imaging 2001; 19: 1125-1128.
23. Gallichan D, Scholz J, Bartsch A, Behrens TE, Robson MD, Miller KL,. Addressing a systematic vibration artifact in diffusion-weighted MRI. Hum Brain Mapp 2010; 31: 193-202.
24. Gallichan D, Robson MD, Bartsch A, Miller KL,. TREMR: Table-resonance elastography with MR. Magn Reson Med 2009; 62: 815-821.
25. Mohammadi S, Nagy Z, Josephs O, Weiskopf N,. The vibration artifact in DTI:assessment and correction. In: Proceedings of the 17th Human Brain Mapping meeting, June 26-30, 2011, Quebec City, Neuroimage, 2011: 49.
26. Nunes RG, Malik SJ, Hajnal O,. Prospective correction of spatially non-linear phase patterns for diffusion-weighted FSE imaging using tailored RF excitation pulses. Proc Intl Soc Magn Reson Med 2011; 19: 172.
27. Müller H-P, Glauche V, Novak MJU, Nguyen-Thanh T, Unrath A, Lahiri N, Read J, Say MJ, Tabrizi SJ, Kassubek J, Kloppel S,. Stability of white matter changes related to Huntington's disease in the presence of imaging noise: a DTI study. PLoS Curr 2011; 3: RRN1232.
28. Mohammadi S, Deppe M, Möller H,. Scaling in readout direction: a vibration-induced distortion of diffusion-weighted images and its retrospective correction by affine registration. Proc Intl Soc Magn Reson Med 2010; 18: 3103.
29. Hiltunen J, Hari R, Jousmäki V, Müller K, Sepponen R, Joensuu R,. Quantification of mechanical vibration during diffusion tensor imaging at 3 T. Neuroimage 2006; 32: 93-103.
30. Skare S, Andersson JL,. On the effects of gating in diffusion imaging of the brain using single shot EPI. Magn Reson Imaging 2001; 19: 1125-1128.
31. Assaf Y, Blumenfeld-Katzir T, Yovel Y, Basser PJ,. AxCaliber: a method for measuring axon diameter distribution from diffusion MRI. Magn Reson Med 2008; 59: 1347-1354. (Pubitemid 351813264)
32. Alexander DC,. A general framework for experiment design in diffusion MRI and its application in measuring direct tissue-microstructure features. Magn Reson Med 2008; 60: 439-448.
33. Behrens TEJ, Berg HJ, Jbabdi S, Rushworth MFS, Woolrich MW,. Probabilistic diffusion tractography with multiple fibre orientations: What can we gain? Neuroimage 2007; 34: 144-155. (Pubitemid 44765263)
34. Haselgrove JC, Moore JR,. Correction for distortion of echo-planar images used to calculate the apparent diffusion coefficient. Magn Reson Med 1996; 36: 960-964. (Pubitemid 26396825)
35. Mohammadi S, Möller HE, Kugel H, Müller DK, Deppe M,. Correcting eddy current and motion effects by affine whole-brain registrations: evaluation of three-dimensional distortions and comparison with slicewise correction. Magn Reson Med 2010; 64: 1047-1056.
36. Jezzard P, Clare S,. Sources of distortion in functional MRI data. Hum Brain Mapp 1999; 8: 80-85. (Pubitemid 29480292)
37. Andersson JLR, Skare S, Ashburner J,. How to correct susceptibility distortions in spin-echo echo-planar images: application to diffusion tensor imaging. Neuroimage 2003; 20: 870-888. (Pubitemid 37268110)
38. Deichmann R, Josephs O, Hutton C, Corfield DR, Turner R,. Compensation of susceptibility-induced BOLD sensitivity losses in echo-planar fMRI imaging. Neuroimage 2002; 15: 120-135. (Pubitemid 34852211)
39. Weiskopf N, Klose U, Birbaumer N, Mathiak K,. Single-shot compensation of image distortions and BOLD contrast optimization using multi-echo EPI for real-time fMRI. Neuroimage 2005; 24: 1068-1079. (Pubitemid 40164509)
40. De Panfilis C, Schwarzbauer C,. Positive or negative blips? The effect of phase encoding scheme on susceptibility-induced signal losses in EPI. Neuroimage 2005; 25: 112-121. (Pubitemid 40289142)
41. Gallichan D, Andersson JLR, Jenkinson M, Robson MD, Miller KL,. Reducing distortions in diffusion-weighted echo planar imaging with a dual-echo blip-reversed sequence. Magn Reson Med 2010; 64: 382-390.
42. Olesch J, Ruthotto L, Kugel H, Skare S, Fischer B, Wolters CH,. A variational approach for the correction of field-inhomogeneities in EPI sequences. San Diego, California; 2010. p 76230K-76230K-8.
43. Holland D, Kuperman JM, Dale AM,. Efficient correction of inhomogeneous static magnetic field-induced distortion in Echo Planar Imaging. Neuroimage 2010; 50: 175-183.
44. Embleton KV, Haroon HA, Morris DM, Ralph MAL, Parker GJM,. Distortion correction for diffusion-weighted MRI tractography and fMRI in the temporal lobes. Hum Brain Mapp 2010; 31: 1570-1587.
45. Storey P, Frigo FJ, Hinks RS, Mock BJ, Collick BD, Baker N, Marmurek J, Graham SJ,. Partial k-space reconstruction in single-shot diffusion-weighted echo-planar imaging. Magn Reson Med 2007; 57: 614-619. (Pubitemid 46385873)
46. Wedeen VJ, Weisskoff RM, Poncelet BP,. MRI signal void due to in-plane motion is all-or-none. Magn Reson Med 1994; 32: 116-120. (Pubitemid 24198563)
47. Feinberg DA, Jakab PD,. Tissue perfusion in humans studied by Fourier velocity distribution, line scan, and echo-planar imaging. Magn Reson Med 1990; 16: 280-293.
48. Posse S,. Direct imaging of magnetic field gradients by group spin-echo selection. Magn Reson Med 1992; 25: 12-29.
49. Weiskopf N, Hutton C, Josephs O, Deichmann R,. Optimal EPI parameters for reduction of susceptibility-induced BOLD sensitivity losses: a whole-brain analysis at 3 T and 1.5 T. Neuroimage 2006; 33: 493-504. (Pubitemid 44485564)
50. Hutton C, Bork A, Josephs O, Deichmann R, Ashburner J, Turner R,. Image distortion correction in fMRI: a quantitative evaluation. Neuroimage 2002; 16: 217-240. (Pubitemid 34852485)
51. Nagy Z, Weiskopf N, Alexander DC, Deichmann R,. A method for improving the performance of gradient systems for diffusion-weighted MRI. Magn Reson Med 2007; 58: 763-768. (Pubitemid 47556881)
52. Nagy Z, Weiskopf N,. Efficient fat suppression by slice-selection gradient reversal in twice-refocused diffusion encoding. Magn Reson Med 2008; 60: 1256-1260.
53. Reese TG, Heid O, Weisskoff RM, Wedeen VJ,. Reduction of eddy-current-induced distortion in diffusion MRI using a twice-refocused spin echo. Magn Reson Med 2003; 49: 177-182. (Pubitemid 36042349)
54. Dubois J, Poupon C, Lethimonnier F, Le Bihan D,. Optimized diffusion gradient orientation schemes for corrupted clinical DTI data sets. MAGMA 2006; 19: 134-143. (Pubitemid 44221469)
55. Penny WD, Friston KJ, Ashburner JT, Kiebel SJ, Nichols TE,. Statistical Parametric Mapping: The Analysis of Functional Brain Images. Academic Press: London; 2006.
56. Basser PJ, Mattiello J, LeBihan D,. Estimation of the effective self-diffusion tensor from the NMR spin echo. J Magn Reson B 1994; 103: 247-254.
57. Holland D, Kuperman JM, Dale AM,. Efficient correction of inhomogeneous static magnetic field-induced distortion in Echo Planar Imaging. Neuroimage 2010; 50: 175-183.
58. Deichmann R, Gottfried JA, Hutton C, Turner R,. Optimized EPI for fMRI studies of the orbitofrontal cortex. Neuroimage 2003; 19: 430-441. (Pubitemid 39665693)
59. Andersson JLR, Skare S,. A model-based method for retrospective correction of geometric distortions in diffusion-weighted EPI. Neuroimage 2002; 16: 177-199. (Pubitemid 34852483)
60. Mohammadi S, Nagy Z, Möller H, Carmichael D, Symms M, Josephs O, Weiskopf N,. Correcting the bias in the apparent diffusion coefficients value due to local perturbation fields: a physically informed model. Proc Intl Soc Magn Reson Med 2011; 19: 1942.