Investigating the interactions between cations, peroxidation substrates and G-quadruplex topology in DNAzyme peroxidation reactions using statistical testing

Analytica Chimica Acta

Volumn 747, Issue , 2012, Pages 1-6

  Nakayama, Shizuka ^a   Sintim, Herman O ^a  

^a Bldg 142   (United States)

Author keywords

Cation; G quadruplex; Peroxidase; Peroxidation substrate; Statistical testing; Topology

Indexed keywords

AMMONIUM CATIONS; DNAZYME; G-QUADRUPLEXES; MANN-WHITNEY; NON-PARAMETRIC TEST; P-VALUES; PEROXIDASE; PEROXIDATION; PEROXIDATION REACTIONS; STATISTICAL TESTING; TETRAMETHYLBENZIDINE;

AMMONIUM COMPOUNDS; ANALYSIS OF VARIANCE (ANOVA); OXIDATION; POSITIVE IONS; STATISTICAL TESTS; TOPOLOGY;

SUBSTRATES;

2,2' AZINOBIS(3 ETHYLBENZOTHIAZOLINE 6 SULFONIC ACID); AMMONIA; CATION; DNA; DNAZYME; POTASSIUM ION; TETRAMETHYLBENZIDINE; TYRAMINE; UNCLASSIFIED DRUG;

ANALYSIS OF VARIANCE; ARTICLE; DNA STRUCTURE; MOLECULAR INTERACTION; PEROXIDATION; PRIORITY JOURNAL; STATISTICAL ANALYSIS; STUDENT T TEST; WILCOXON MANN WHITNEY NONPARAMETRIC TEST;

ANALYSIS OF VARIANCE; BENZIDINES; BENZOTHIAZOLES; BIOCATALYSIS; CATIONS; DNA, CATALYTIC; G-QUADRUPLEXES; HEMIN; PEROXIDASE; POTASSIUM; QUATERNARY AMMONIUM COMPOUNDS; STATISTICS, NONPARAMETRIC; SULFONIC ACIDS; TYRAMINE;

EID: 84866322954     PISSN: 00032670     EISSN: 18734324     Source Type: Journal    
DOI: 10.1016/j.aca.2012.08.008     Document Type: Article

References (55)

1. Kruger K., Grabowski P.J., Zaug A.J., Sands J., Gottschling D.E., Cech T.R. Cell 1982, 31:147-157.
2. Guerriertakada C., Gardiner K., Marsh T., Pace N., Altman S. Cell 1983, 35:849-857.
3. Travascio P., Li Y.F., Sen D. Chem. Biol. 1998, 5:505-517.
4. Bartel D.P., Szostak J.W. Science 1993, 261:1411-1418.
5. Zhou X.-H., Kong D.-M., Shen H.-X. Anal. Chim. Acta 2010, 678:124-127.
6. Chapman K.B., Szostak J.W. Chem. Biol. 1995, 2:325-333.
7. Conn M.M., Prudent J.R., Schultz P.G. J. Am. Chem. Soc. 1996, 118:7012-7013.
8. Cuenoud B., Szostak J.W. Nature 1995, 375:611-614.
9. Ekland E.H., Bartel D.P. Nature 1996, 382:373-376.
10. Illangasekare M., Sanchez G., Nickles T., Yarus M. Science 1995, 267:643-647.
11. Li Y.F., Sen D. Nat. Struct. Biol. 1996, 3:743-747.
12. Shimron S., Wang F., Orbach R., Willner I. Anal. Chem. 2012, 84:1042-1048.
13. Li R., Xiong C., Xiao Z., Ling L. Anal. Chim. Acta 2012, 724:80-85.
14. Xiao H.-J., Hak H.C., Kong D.-M., Shen H.-X. Anal. Chim. Acta 2012, 729:67-72.
15. He H.-Z., Ma V.P.-Y., Leung K.-H., Chan D.S.-H., Yang H., Cheng Z., Leung C.-H., Ma D.-L. Analyst 2012, 137:1538-1540.
16. Wen Y., Peng C., Li D., Zhuo L., He S., Wang L., Huang Q., Xu Q.-H., Fan C. Chem. Commun. 2011, 47:6278-6280.
17. Zhao X.-H., Kong R.-M., Zhang X.-B., Meng H.-M., Liu W.-N., Tan W., Shen G.-L., Yu R.-Q. Anal. Chem. 2011, 83:5062-5066.
18. Liu M., Lou X., Du J., Guan M., Wang J., Ding X., Zhao J. Analyst 2012, 137:70-72.
19. Nakayama S., Roelofs K., Lee V.T., Sintim H.O. Mol. Biosyst. 2012, 8:726-729.
20. Hou X., Guo W., Xia F., Nie F.Q., Dong H., Tian Y., Wen L.P., Wang L., Cao L.X., Yang Y., Xue J.M., Song Y.L., Wang Y.G., Liu D.S., Jiang L. J. Am. Chem. Soc. 2009, 131:7800-7805.
21. Martadinata H., Phan A.T. J. Am. Chem. Soc. 2009, 131:2570-2578.
22. Santoro S.W., Joyce G.F. Proc. Natl. Acad. Sci. U.S.A. 1997, 94:4262-4266.
23. Breaker R.R., Joyce G.F. Chem. Biol. 1995, 2:655-660.
24. He Y., Lu Y. Chem. Eur. J. 2011, 17:13732-13742.
25. Nelson K.E., Ihms H.E., Mazumdar D., Bruesehoff P.J., Lu Y. Chembiochem 2012, 13:381-391.
26. Silverman S.K. Angew. Chem. Int. Engl. 2010, 49:7180-7201.
27. Chandra M., Sachdeva A., Silverman S.K. Nat. Chem. Biol. 2009, 5:718-720.
28. Nakayama S., Wang J., Sintim H.O. Chem. Eur. J. 2011, 17:5691-5698.
29. Nakayama S., Sintim H.O. J. Am. Chem. Soc. 2009, 131:10320-10333.
30. Nakayama S., Sintim H.O. Mol. Biosyst. 2010, 6:95-97.
31. Neo J.L., Aw K.D., Uttamchandani M. Analyst 2011, 136:1569-1572.
32. Kosman J., Juskowiak B. Cent. Eur. J. Chem. 2012, 10:368-372.
33. Kong D.-M., Cai L.-L., Guo J.-H., Wu J., Shen H.-X. Biopolymers 2009, 91:331-339.
34. Cheng X., Liu X., Bing T., Cao Z., Shangguan D. Biochemistry 2009, 48:7817-7823.
35. Kong D.-M., Yang W., Wu J., Li C.-X., Shen H.-X. Analyst 2010, 135:321-326.
36. Li T., Wang E., Dong S. J. Am. Chem. Soc. 2009, 131:15082-15083.
37. Schultze P., Hud N.V., Smith F.W., Feigon J. Nucleic Acids Res. 1999, 27:3018-3028.
38. Wang Y., Patel D.J. Biochemistry 1992, 31:8112-8119.
39. Ambrus A., Chen D., Dai J.X., Bialis T., Jones R.A., Yang D.Z. Nucleic Acids Res. 2006, 34:2723-2735.
40. Rosu F., Gabelica V., Poncelet H., De Pauw E. Nucleic Acids Res. 2010, 38:5217-5225.
41. Hud N.V., Schultze P., Sklenar V., Feigon J. J. Mol. Biol. 1999, 285:233-243.
42. Ida R., Wu G. Chem. Commun. 2005, 4294-4296.
43. Marincola F.C., Virno A., Randazzo A., Lai A. Nucleosides Nucleotides Nucleic Acids 2007, 26:1129-1132.
44. Forman S.L., Fettinger J.C., Pieraccini S., Gottareli G., Davis J.T. J. Am. Chem. Soc. 2000, 122:4060-4067.
45. Mueller B., Shen W.-Z., Sanz Miguel P.J., Alberti F.M., van der Wijst T., Noguera M., Rodriguez-Santiago L., Sodupe M., Lippert B. Chem. Eur. J. 2011, 17:9970-9983.
46. Lippert B. Coord. Chem. Rev. 2000, 200:487-516.
47. Pedroso I.A., Duarte L.F., Yanez G., Baker A.M., Fletcher T.M. Biochem. Biophys. Res. Commun. 2007, 358:298-303.
48. Kankia B.I., Marky L.A. J. Am. Chem. Soc. 2001, 123:10799-10804.
49. Vairamani M., Gross M.L. J. Am. Chem. Soc. 2003, 125:42-43.
50. Shim J.W., Tan Q., Gu L.-Q. Nucleic Acids Res. 2009, 37:972-982.
51. Kotch F.W., Fettinger J.C., Davis J.T. Org. Lett. 2000, 2:3277-3280.
52. Nagesh N., Bhargava P., Chatterji D. Biopolymers 1992, 32:1421-1424.
53. Zhang J., Chen J., Chen R., Chen G., Fu F. Biosens. Bioelectron. 2009, 25:378-382.
54. Wang C., Li Y., Jia G., Liu Y., Lu S., Li C. Chem. Commun. 2012, 48:6232-6234.
55. Roe S., Ritson D.J., Garner T., Searle M., Moses J.E. Chem. Commun. 2010, 46:4309-4311.