-
1
-
-
73249135142
-
Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production
-
10.1101/gr.091777.109, 2792172, 19812109
-
Argueso JL, Carazzolle MF, Mieczkowski PA, Duarte FM, Netto OVC, Missawa SK, Galzerani F, Costa GGL, Vidal RO, Noronha MF, Dominska M, Andrietta MGS, Andrietta SR, Cunha AF, Gomes LH, Tavares FCA, Alcarde AR, Dietrich FS, McCusker JH, Petes TD, Pereira GAG. Genome structure of a Saccharomyces cerevisiae strain widely used in bioethanol production. Genome Res 2009, 19(12):2258-2270. 10.1101/gr.091777.109, 2792172, 19812109.
-
(2009)
Genome Res
, vol.19
, Issue.12
, pp. 2258-2270
-
-
Argueso, J.L.1
Carazzolle, M.F.2
Mieczkowski, P.A.3
Duarte, F.M.4
Netto, O.V.C.5
Missawa, S.K.6
Galzerani, F.7
Costa, G.G.L.8
Vidal, R.O.9
Noronha, M.F.10
Dominska, M.11
Andrietta, M.G.S.12
Andrietta, S.R.13
Cunha, A.F.14
Gomes, L.H.15
Tavares, F.C.A.16
Alcarde, A.R.17
Dietrich, F.S.18
McCusker, J.H.19
Petes, T.D.20
Pereira, G.A.G.21
more..
-
2
-
-
79959595993
-
Techno-economic implications of improved high gravity corn mash fermentation
-
10.1016/j.biortech.2011.04.094, 21632242
-
Kollaras A, Kavanagh JM, Bell GL, Purkovic D, Mandarakas S, Arcenal P, Ng WS, Routledge KS, Selwood DH, Koutouridis P, Paras FE, Milic P, Tirado-Escobar ES, Moore MJ, Bell PJ, Attfield PV. Techno-economic implications of improved high gravity corn mash fermentation. Bioresour Technol 2011, 102(16):7521-7525. 10.1016/j.biortech.2011.04.094, 21632242.
-
(2011)
Bioresour Technol
, vol.102
, Issue.16
, pp. 7521-7525
-
-
Kollaras, A.1
Kavanagh, J.M.2
Bell, G.L.3
Purkovic, D.4
Mandarakas, S.5
Arcenal, P.6
Ng, W.S.7
Routledge, K.S.8
Selwood, D.H.9
Koutouridis, P.10
Paras, F.E.11
Milic, P.12
Tirado-Escobar, E.S.13
Moore, M.J.14
Bell, P.J.15
Attfield, P.V.16
-
3
-
-
78650829210
-
Screening and construction of Saccharomyces cerevisiae strains with improved multi-tolerance and bioethanol fermentation performance
-
Zheng DQ, Wu XC, Tao XL, Wang PM, Li P, Chi XQ, Li YD, Yan QF, Zhao YH. Screening and construction of Saccharomyces cerevisiae strains with improved multi-tolerance and bioethanol fermentation performance. Bioresour Technol 2010, 102(3):3020-3027.
-
(2010)
Bioresour Technol
, vol.102
, Issue.3
, pp. 3020-3027
-
-
Zheng, D.Q.1
Wu, X.C.2
Tao, X.L.3
Wang, P.M.4
Li, P.5
Chi, X.Q.6
Li, Y.D.7
Yan, Q.F.8
Zhao, Y.H.9
-
4
-
-
76649111376
-
High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?
-
10.1007/s00253-009-2248-5, 19820925
-
Abdel-Banat BMA, Hoshida H, Ano A, Nonklang S, Akada R. High-temperature fermentation: how can processes for ethanol production at high temperatures become superior to the traditional process using mesophilic yeast?. Appl Microbiol Biotechnol 2010, 85(4):861-867. 10.1007/s00253-009-2248-5, 19820925.
-
(2010)
Appl Microbiol Biotechnol
, vol.85
, Issue.4
, pp. 861-867
-
-
Abdel-Banat, B.M.A.1
Hoshida, H.2
Ano, A.3
Nonklang, S.4
Akada, R.5
-
5
-
-
79952181277
-
Stress-related challenges in pentose fermentation to ethanol by the yeast Saccharomyces cerevisiae
-
10.1002/biot.201000301, 21305697
-
Almeida JRM, Runquist D, Nogue VSI, Liden G, Gorwa-Grauslund MF. Stress-related challenges in pentose fermentation to ethanol by the yeast Saccharomyces cerevisiae. Biotechnol J 2011, 6(3):286-299. 10.1002/biot.201000301, 21305697.
-
(2011)
Biotechnol J
, vol.6
, Issue.3
, pp. 286-299
-
-
Almeida, J.R.M.1
Runquist, D.2
Nogue, V.S.I.3
Liden, G.4
Gorwa-Grauslund, M.F.5
-
6
-
-
77956175894
-
Selection of stress-tolerant yeasts for simultaneous saccharification and fermentation (SSF) of very high gravity (VHG) potato mash to ethanol
-
10.1016/j.biortech.2010.07.079, 20705456
-
Nakamura T, Watanabe T, Srichuwong S, Arakane M, Tamiya S, Yoshinaga M, Watanabe I, Yamamoto M, Ando A, Tokuyasu K. Selection of stress-tolerant yeasts for simultaneous saccharification and fermentation (SSF) of very high gravity (VHG) potato mash to ethanol. Bioresour Technol 2010, 101(24):9710-9714. 10.1016/j.biortech.2010.07.079, 20705456.
-
(2010)
Bioresour Technol
, vol.101
, Issue.24
, pp. 9710-9714
-
-
Nakamura, T.1
Watanabe, T.2
Srichuwong, S.3
Arakane, M.4
Tamiya, S.5
Yoshinaga, M.6
Watanabe, I.7
Yamamoto, M.8
Ando, A.9
Tokuyasu, K.10
-
7
-
-
10244239321
-
Life with 6000 genes
-
10.1126/science.274.5287.546, 8849441
-
Goffeau A, Barrell BG, Bussey H, Davis RW, Dujon B, Feldmann H, Galibert F, Hoheisel JD, Jacq C, Johnston M, Louis EJ, Mewes HW, Murakami Y, Philippsen P, Tettelin H, Oliver SG. Life with 6000 genes. Science 1996, 274(5287):546-567. 10.1126/science.274.5287.546, 8849441.
-
(1996)
Science
, vol.274
, Issue.5287
, pp. 546-567
-
-
Goffeau, A.1
Barrell, B.G.2
Bussey, H.3
Davis, R.W.4
Dujon, B.5
Feldmann, H.6
Galibert, F.7
Hoheisel, J.D.8
Jacq, C.9
Johnston, M.10
Louis, E.J.11
Mewes, H.W.12
Murakami, Y.13
Philippsen, P.14
Tettelin, H.15
Oliver, S.G.16
-
8
-
-
55449107183
-
Variations in stress sensitivity and genomic expression in diverseS. cerevisiaeisolates
-
10.1371/journal.pgen.1000223, 2562515, 18927628
-
Kvitek DJ, Will JL, Gasch AP. Variations in stress sensitivity and genomic expression in diverseS. cerevisiaeisolates. PLoS Genet 2008, 4(10):e1000223. 10.1371/journal.pgen.1000223, 2562515, 18927628.
-
(2008)
PLoS Genet
, vol.4
, Issue.10
-
-
Kvitek, D.J.1
Will, J.L.2
Gasch, A.P.3
-
9
-
-
78549260740
-
Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae
-
10.1186/1471-2164-11-660, 3091778, 21106074
-
Ma MG, Liu ZL. Comparative transcriptome profiling analyses during the lag phase uncover YAP1, PDR1, PDR3, RPN4, and HSF1 as key regulatory genes in genomic adaptation to the lignocellulose derived inhibitor HMF for Saccharomyces cerevisiae. BMC Genomics 2010, 11:660. 10.1186/1471-2164-11-660, 3091778, 21106074.
-
(2010)
BMC Genomics
, vol.11
, pp. 660
-
-
Ma, M.G.1
Liu, Z.L.2
-
10
-
-
0035149551
-
Remodeling of yeast genome expression in response to environmental changes
-
30946, 11179418
-
Causton HC, Ren B, Koh SS, Harbison CT, Kanin E, Jennings EG, Lee TI, True HL, Lander ES, Young RA. Remodeling of yeast genome expression in response to environmental changes. Mol Biol Cell 2001, 12(2):323-337. 30946, 11179418.
-
(2001)
Mol Biol Cell
, vol.12
, Issue.2
, pp. 323-337
-
-
Causton, H.C.1
Ren, B.2
Koh, S.S.3
Harbison, C.T.4
Kanin, E.5
Jennings, E.G.6
Lee, T.I.7
True, H.L.8
Lander, E.S.9
Young, R.A.10
-
11
-
-
84984933073
-
Structure and function of a transcriptional network activated by the MAPK Hog1
-
10.1038/ng.235, 2825711, 18931682
-
Capaldi AP, Kaplan T, Liu Y, Habib N, Regev A, Friedman N, O'Shea EK. Structure and function of a transcriptional network activated by the MAPK Hog1. Nat Genet 2008, 40(11):1300-1306. 10.1038/ng.235, 2825711, 18931682.
-
(2008)
Nat Genet
, vol.40
, Issue.11
, pp. 1300-1306
-
-
Capaldi, A.P.1
Kaplan, T.2
Liu, Y.3
Habib, N.4
Regev, A.5
Friedman, N.6
O'Shea, E.K.7
-
12
-
-
0033637153
-
Genomic expression programs in the response of yeast cells to environmental changes
-
15070, 11102521
-
Gasch AP, Spellman PT, Kao CM, Carmel-Harel O, Eisen MB, Storz G, Botstein D, Brown PO. Genomic expression programs in the response of yeast cells to environmental changes. Mol Biol Cell 2000, 11(12):4241-4257. 15070, 11102521.
-
(2000)
Mol Biol Cell
, vol.11
, Issue.12
, pp. 4241-4257
-
-
Gasch, A.P.1
Spellman, P.T.2
Kao, C.M.3
Carmel-Harel, O.4
Eisen, M.B.5
Storz, G.6
Botstein, D.7
Brown, P.O.8
-
13
-
-
2942598422
-
Genome-wide analysis of the biology of stress responses through heat shock transcription factor
-
10.1128/MCB.24.12.5249-5256.2004, 419887, 15169889
-
Hahn JS, Hu ZZ, Thiele DJ, Iyer VR. Genome-wide analysis of the biology of stress responses through heat shock transcription factor. Mol Cell Biol 2004, 24(12):5249-5256. 10.1128/MCB.24.12.5249-5256.2004, 419887, 15169889.
-
(2004)
Mol Cell Biol
, vol.24
, Issue.12
, pp. 5249-5256
-
-
Hahn, J.S.1
Hu, Z.Z.2
Thiele, D.J.3
Iyer, V.R.4
-
14
-
-
69549083476
-
Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae
-
10.1007/BF03195688, 19638689
-
Auesukaree C, Damnernsawad A, Kruatrachue M, Pokethitiyook P, Boonchird C, Kaneko Y, Harashima S. Genome-wide identification of genes involved in tolerance to various environmental stresses in Saccharomyces cerevisiae. J Appl Genet 2009, 50(3):301-310. 10.1007/BF03195688, 19638689.
-
(2009)
J Appl Genet
, vol.50
, Issue.3
, pp. 301-310
-
-
Auesukaree, C.1
Damnernsawad, A.2
Kruatrachue, M.3
Pokethitiyook, P.4
Boonchird, C.5
Kaneko, Y.6
Harashima, S.7
-
15
-
-
0037173615
-
Functional profiling of the Saccharomyces cerevisiae genome
-
Giaever G, Chu AM, Ni L, Connelly C, Riles L, Veronneau S, Dow S, Lucau-Danila A, Anderson K, Andre B, Arkin AP, Astromoff A, El Bakkoury M, Bangham R, Benito R, Brachat S, Campanaro S, Curtiss M, Davis K, Deutschbauer A, Entian KD, Flaherty P, Foury F, Garfinkel DJ, Gerstein M, Gotte D, Guldener U, Hegemann JH, Hempel S, Herman Z, et al. Functional profiling of the Saccharomyces cerevisiae genome. Nature 2002, 41(6896):387-391.
-
(2002)
Nature
, vol.41
, Issue.6896
, pp. 387-391
-
-
Giaever, G.1
Chu, A.M.2
Ni, L.3
Connelly, C.4
Riles, L.5
Veronneau, S.6
Dow, S.7
Lucau-Danila, A.8
Anderson, K.9
Andre, B.10
Arkin, A.P.11
Astromoff, A.12
El Bakkoury, M.13
Bangham, R.14
Benito, R.15
Brachat, S.16
Campanaro, S.17
Curtiss, M.18
Davis, K.19
Deutschbauer, A.20
Entian, K.D.21
Flaherty, P.22
Foury, F.23
Garfinkel, D.J.24
Gerstein, M.25
Gotte, D.26
Guldener, U.27
Hegemann, J.H.28
Hempel, S.29
Herman, Z.30
more..
-
16
-
-
4544352942
-
Transcriptional regulatory code of a eukaryotic genome
-
10.1038/nature02800, 3006441, 15343339
-
Harbison CT, Gordon DB, Lee TI, Rinaldi NJ, Macisaac KD, Danford TW, Hannett NM, Tagne JB, Reynolds DB, Yoo J, Jennings EG, Zeitlinger J, Pokholok DK, Kellis M, Rolfe PA, Takusagawa KT, Lander ES, Gifford DK, Fraenkel E, Young RA. Transcriptional regulatory code of a eukaryotic genome. Nature 2004, 431(7004):99-104. 10.1038/nature02800, 3006441, 15343339.
-
(2004)
Nature
, vol.431
, Issue.7004
, pp. 99-104
-
-
Harbison, C.T.1
Gordon, D.B.2
Lee, T.I.3
Rinaldi, N.J.4
Macisaac, K.D.5
Danford, T.W.6
Hannett, N.M.7
Tagne, J.B.8
Reynolds, D.B.9
Yoo, J.10
Jennings, E.G.11
Zeitlinger, J.12
Pokholok, D.K.13
Kellis, M.14
Rolfe, P.A.15
Takusagawa, K.T.16
Lander, E.S.17
Gifford, D.K.18
Fraenkel, E.19
Young, R.A.20
more..
-
17
-
-
62649089109
-
Population genomics of domestic and wild yeasts
-
10.1038/nature07743, 2659681, 19212322
-
Liti G, Carter DM, Moses AM, Warringer J, Parts L, James SA, Davey RP, Roberts IN, Burt A, Koufopanou V, Tsai IJ, Bergman CM, Bensasson D, O'Kelly MJT, van Oudenaarden A, Barton DBH, Bailes E, Ba ANN, Jones M, Quail MA, Goodhead I, Sims S, Smith F, Blomberg A, Durbin R, Louis EJ. Population genomics of domestic and wild yeasts. Nature 2009, 458(7236):337-341. 10.1038/nature07743, 2659681, 19212322.
-
(2009)
Nature
, vol.458
, Issue.7236
, pp. 337-341
-
-
Liti, G.1
Carter, D.M.2
Moses, A.M.3
Warringer, J.4
Parts, L.5
James, S.A.6
Davey, R.P.7
Roberts, I.N.8
Burt, A.9
Koufopanou, V.10
Tsai, I.J.11
Bergman, C.M.12
Bensasson, D.13
O'Kelly, M.J.T.14
van Oudenaarden, A.15
Barton, D.B.H.16
Bailes, E.17
Ba, A.N.N.18
Jones, M.19
Quail, M.A.20
Goodhead, I.21
Sims, S.22
Smith, F.23
Blomberg, A.24
Durbin, R.25
Louis, E.J.26
more..
-
18
-
-
77951530523
-
Genotype to phenotype: a complex problem
-
10.1126/science.1189015, 20413493
-
Dowell RD, Ryan O, Jansen A, Cheung D, Agarwala S, Danford T, Bernstein DA, Rolfe PA, Heisler LE, Chin B, Nislow C, Giaever G, Phillips PC, Fink GR, Gifford DK, Boone C. Genotype to phenotype: a complex problem. Science 2010, 328(5977):469-469. 10.1126/science.1189015, 20413493.
-
(2010)
Science
, vol.328
, Issue.5977
, pp. 469-469
-
-
Dowell, R.D.1
Ryan, O.2
Jansen, A.3
Cheung, D.4
Agarwala, S.5
Danford, T.6
Bernstein, D.A.7
Rolfe, P.A.8
Heisler, L.E.9
Chin, B.10
Nislow, C.11
Giaever, G.12
Phillips, P.C.13
Fink, G.R.14
Gifford, D.K.15
Boone, C.16
-
19
-
-
82255194233
-
Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7
-
10.1093/dnares/dsr029, 3223075, 21900213
-
Akao T, Yashiro I, Hosoyama A, Kitagaki H, Horikawa H, Watanabe D, Akada R, Ando Y, Harashima S, Inoue T, Inoue Y, Kajiwara S, Kitamoto K, Kitamoto N, Kobayashi O, Kuhara S, Masubuchi T, Mizoguchi H, Nakao Y, Nakazato A, Namise M, Oba T, Ogata T, Ohta A, Sato M, Shibasaki S, Takatsume Y, Tanimoto S, Tsuboi H, Nishimura A, et al. Whole-genome sequencing of sake yeast Saccharomyces cerevisiae Kyokai no. 7. DNA Res 2011, 18(6):423-434. 10.1093/dnares/dsr029, 3223075, 21900213.
-
(2011)
DNA Res
, vol.18
, Issue.6
, pp. 423-434
-
-
Akao, T.1
Yashiro, I.2
Hosoyama, A.3
Kitagaki, H.4
Horikawa, H.5
Watanabe, D.6
Akada, R.7
Ando, Y.8
Harashima, S.9
Inoue, T.10
Inoue, Y.11
Kajiwara, S.12
Kitamoto, K.13
Kitamoto, N.14
Kobayashi, O.15
Kuhara, S.16
Masubuchi, T.17
Mizoguchi, H.18
Nakao, Y.19
Nakazato, A.20
Namise, M.21
Oba, T.22
Ogata, T.23
Ohta, A.24
Sato, M.25
Shibasaki, S.26
Takatsume, Y.27
Tanimoto, S.28
Tsuboi, H.29
Nishimura, A.30
more..
-
20
-
-
79952262678
-
Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae
-
10.1371/journal.pgen.1001287, 3033381, 21304888
-
Borneman AR, Desany BA, Riches D, Affourtit JP, Forgan AH, Pretorius IS, Egholm M, Chambers PJ. Whole-genome comparison reveals novel genetic elements that characterize the genome of industrial strains of Saccharomyces cerevisiae. PLoS Genet 2011, 7(2):e1001287. 10.1371/journal.pgen.1001287, 3033381, 21304888.
-
(2011)
PLoS Genet
, vol.7
, Issue.2
-
-
Borneman, A.R.1
Desany, B.A.2
Riches, D.3
Affourtit, J.P.4
Forgan, A.H.5
Pretorius, I.S.6
Egholm, M.7
Chambers, P.J.8
-
21
-
-
54049088949
-
Comparative genome analysis of a Saccharomyces cerevisiae wine strain
-
10.1111/j.1567-1364.2008.00434.x, 18778279
-
Borneman AR, Forgan AH, Pretorius IS, Chambers PJ. Comparative genome analysis of a Saccharomyces cerevisiae wine strain. FEMS Yeast Res 2008, 8(7):1185-1195. 10.1111/j.1567-1364.2008.00434.x, 18778279.
-
(2008)
FEMS Yeast Res
, vol.8
, Issue.7
, pp. 1185-1195
-
-
Borneman, A.R.1
Forgan, A.H.2
Pretorius, I.S.3
Chambers, P.J.4
-
22
-
-
0742304300
-
The importance of a functional trehalose biosynthetic pathway for the life of yeasts and fungi
-
Gancedo C, Flores CL. The importance of a functional trehalose biosynthetic pathway for the life of yeasts and fungi. FEMS Yeast Res 2004, 4(4-5):351-359.
-
(2004)
FEMS Yeast Res
, vol.4
, Issue.4-5
, pp. 351-359
-
-
Gancedo, C.1
Flores, C.L.2
-
23
-
-
10444257943
-
Yeast signaling pathways in the oxidative stress response
-
Ikner A, Shiozaki K. Yeast signaling pathways in the oxidative stress response. Mutat Res 2005, 569(1-2):13-27.
-
(2005)
Mutat Res
, vol.569
, Issue.1-2
, pp. 13-27
-
-
Ikner, A.1
Shiozaki, K.2
-
24
-
-
33744474816
-
A 5-hydroxymethyl furfural reducing enzyme encoded by the Saccharomyces cerevisiae ADH6 gene conveys HMF tolerance
-
10.1002/yea.1370, 16652391
-
Petersson A, Almeida JRM, Modig T, Karhumaa K, Hahn-Hägerdal B, Gorwa-Grauslund MF, Liden G. A 5-hydroxymethyl furfural reducing enzyme encoded by the Saccharomyces cerevisiae ADH6 gene conveys HMF tolerance. Yeast 2006, 23(6):455-464. 10.1002/yea.1370, 16652391.
-
(2006)
Yeast
, vol.23
, Issue.6
, pp. 455-464
-
-
Petersson, A.1
Almeida, J.R.M.2
Modig, T.3
Karhumaa, K.4
Hahn-Hägerdal, B.5
Gorwa-Grauslund, M.F.6
Liden, G.7
-
25
-
-
79954648688
-
Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates
-
10.1007/s00253-011-3167-9, 21380517
-
Liu ZL. Molecular mechanisms of yeast tolerance and in situ detoxification of lignocellulose hydrolysates. Appl Microbiol Biotechnol 2011, 90(3):809-825. 10.1007/s00253-011-3167-9, 21380517.
-
(2011)
Appl Microbiol Biotechnol
, vol.90
, Issue.3
, pp. 809-825
-
-
Liu, Z.L.1
-
26
-
-
84860591356
-
Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments
-
10.1101/gr.130310.111, 22369888
-
Dunn B, Richter C, Kvitek DJ, Pugh T, Sherlock G. Analysis of the Saccharomyces cerevisiae pan-genome reveals a pool of copy number variants distributed in diverse yeast strains from differing industrial environments. Genome Res 2012, 22(5):908-924. 10.1101/gr.130310.111, 22369888.
-
(2012)
Genome Res
, vol.22
, Issue.5
, pp. 908-924
-
-
Dunn, B.1
Richter, C.2
Kvitek, D.J.3
Pugh, T.4
Sherlock, G.5
-
27
-
-
0027463082
-
Molecular-structure and genetic-regulation of Sfa, a gene responsible for resistance to formaldehyde in Saccharomyces-cerevisiae, and characterization of its protein product
-
Wehner EP, Rao E, Brendel M. Molecular-structure and genetic-regulation of Sfa, a gene responsible for resistance to formaldehyde in Saccharomyces-cerevisiae, and characterization of its protein product. Mol Gen Genet 1993, 237(3):351-358.
-
(1993)
Mol Gen Genet
, vol.237
, Issue.3
, pp. 351-358
-
-
Wehner, E.P.1
Rao, E.2
Brendel, M.3
-
28
-
-
0344117668
-
A 'natural' mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1)
-
10.1007/s002940050490, 10541856
-
Gaisne M, Bécam AM, Verdiere J, Herbert CJ. A 'natural' mutation in Saccharomyces cerevisiae strains derived from S288c affects the complex regulatory gene HAP1 (CYP1). Curr Genet 1999, 36(4):195-200. 10.1007/s002940050490, 10541856.
-
(1999)
Curr Genet
, vol.36
, Issue.4
, pp. 195-200
-
-
Gaisne, M.1
Bécam, A.M.2
Verdiere, J.3
Herbert, C.J.4
-
29
-
-
0034721907
-
Characterization of the Saccharomyces cerevisiae high affinity copper transporter Ctr3
-
10.1074/jbc.M005392200, 10924521
-
Peña MMO, Puig S, Thiele DJ. Characterization of the Saccharomyces cerevisiae high affinity copper transporter Ctr3. J Biol Chem 2000, 275(43):33244-33251. 10.1074/jbc.M005392200, 10924521.
-
(2000)
J Biol Chem
, vol.275
, Issue.43
, pp. 33244-33251
-
-
Peña, M.M.O.1
Puig, S.2
Thiele, D.J.3
-
30
-
-
0029786735
-
A widespread transposable element masks expression of a yeast copper transport gene
-
10.1101/gad.10.15.1917, 8756349
-
Knight SA, Labbe S, Kwon LF, Kosman DJ, Thiele DJ. A widespread transposable element masks expression of a yeast copper transport gene. Genes Dev 1996, 10(15):1917-1929. 10.1101/gad.10.15.1917, 8756349.
-
(1996)
Genes Dev
, vol.10
, Issue.15
, pp. 1917-1929
-
-
Knight, S.A.1
Labbe, S.2
Kwon, L.F.3
Kosman, D.J.4
Thiele, D.J.5
-
31
-
-
79958013665
-
A genetic and structural study of genome rearrangements mediated by high copy repeat Ty1 elements
-
10.1371/journal.pgen.1002089, 3102749, 21637792
-
Chan JE, Kolodner RD. A genetic and structural study of genome rearrangements mediated by high copy repeat Ty1 elements. PLoS Genet 2011, 7(5):e1002089. 10.1371/journal.pgen.1002089, 3102749, 21637792.
-
(2011)
PLoS Genet
, vol.7
, Issue.5
-
-
Chan, J.E.1
Kolodner, R.D.2
-
32
-
-
34547913442
-
Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789
-
10.1073/pnas.0701291104, 1933262, 17652520
-
Wei W, McCusker JH, Hyman RW, Jones T, Ning Y, Cao Z, Gu Z, Bruno D, Miranda M, Nguyen M, Wilhelmy J, Komp C, Tamse R, Wang X, Jia P, Luedi P, Oefner PJ, David L, Dietrich FS, Li Y, Davis RW, Steinmetz LM. Genome sequencing and comparative analysis of Saccharomyces cerevisiae strain YJM789. Proc Natl Acad Sci USA 2007, 104(31):12825-12830. 10.1073/pnas.0701291104, 1933262, 17652520.
-
(2007)
Proc Natl Acad Sci USA
, vol.104
, Issue.31
, pp. 12825-12830
-
-
Wei, W.1
McCusker, J.H.2
Hyman, R.W.3
Jones, T.4
Ning, Y.5
Cao, Z.6
Gu, Z.7
Bruno, D.8
Miranda, M.9
Nguyen, M.10
Wilhelmy, J.11
Komp, C.12
Tamse, R.13
Wang, X.14
Jia, P.15
Luedi, P.16
Oefner, P.J.17
David, L.18
Dietrich, F.S.19
Li, Y.20
Davis, R.W.21
Steinmetz, L.M.22
more..
-
33
-
-
33845925240
-
Genome-wide analysis reveals new roles for the activation domains of the Saccharomyces cerevisiae heat shock transcription factor (Hsf1) during the transient heat shock response
-
10.1074/jbc.M602454200, 2243236, 16926161
-
Eastmond DL, Nelson HCM. Genome-wide analysis reveals new roles for the activation domains of the Saccharomyces cerevisiae heat shock transcription factor (Hsf1) during the transient heat shock response. J Biol Chem 2006, 281(43):32909-32921. 10.1074/jbc.M602454200, 2243236, 16926161.
-
(2006)
J Biol Chem
, vol.281
, Issue.43
, pp. 32909-32921
-
-
Eastmond, D.L.1
Nelson, H.C.M.2
-
34
-
-
33747882660
-
Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae
-
Mieczkowski PA, Lemoine FJ, Petes TD. Recombination between retrotransposons as a source of chromosome rearrangements in the yeast Saccharomyces cerevisiae. DNA Repair 2006, 5(9-10):1010-1020.
-
(2006)
DNA Repair
, vol.5
, Issue.9-10
, pp. 1010-1020
-
-
Mieczkowski, P.A.1
Lemoine, F.J.2
Petes, T.D.3
-
35
-
-
70349515584
-
Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118
-
10.1073/pnas.0904673106, 2740733, 19805302
-
Novo M, Bigey F, Beyne E, Galeote V, Gavory F, Mallet S, Cambon B, Legras JL, Wincker P, Casaregola S, Dequin S. Eukaryote-to-eukaryote gene transfer events revealed by the genome sequence of the wine yeast Saccharomyces cerevisiae EC1118. Proc Natl Acad Sci USA 2009, 106(38):16333-16338. 10.1073/pnas.0904673106, 2740733, 19805302.
-
(2009)
Proc Natl Acad Sci USA
, vol.106
, Issue.38
, pp. 16333-16338
-
-
Novo, M.1
Bigey, F.2
Beyne, E.3
Galeote, V.4
Gavory, F.5
Mallet, S.6
Cambon, B.7
Legras, J.L.8
Wincker, P.9
Casaregola, S.10
Dequin, S.11
-
36
-
-
50849102293
-
A catalog of neutral and deleterious polymorphism in yeast
-
10.1371/journal.pgen.1000183, 2515631, 18769710
-
Doniger SW, Kim HS, Swain D, Corcuera D, Williams M, Yang SP, Fay JC. A catalog of neutral and deleterious polymorphism in yeast. PLoS Genet 2008, 4(8):e1000183. 10.1371/journal.pgen.1000183, 2515631, 18769710.
-
(2008)
PLoS Genet
, vol.4
, Issue.8
-
-
Doniger, S.W.1
Kim, H.S.2
Swain, D.3
Corcuera, D.4
Williams, M.5
Yang, S.P.6
Fay, J.C.7
-
37
-
-
77952982347
-
Natural selection on cis and trans regulation in yeasts
-
10.1101/gr.101576.109, 2877579, 20445163
-
Emerson JJ, Hsieh LC, Sung HM, Wang TY, Huang CJ, Lu HH, Lu MY, Wu SH, Li WH. Natural selection on cis and trans regulation in yeasts. Genome Res 2010, 20(6):826-836. 10.1101/gr.101576.109, 2877579, 20445163.
-
(2010)
Genome Res
, vol.20
, Issue.6
, pp. 826-836
-
-
Emerson, J.J.1
Hsieh, L.C.2
Sung, H.M.3
Wang, T.Y.4
Huang, C.J.5
Lu, H.H.6
Lu, M.Y.7
Wu, S.H.8
Li, W.H.9
-
38
-
-
0042856391
-
Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors
-
Yvert G, Brem RB, Whittle J, Akey JM, Foss E, Smith EN, Mackelprang R, Kruglyak L. Trans-acting regulatory variation in Saccharomyces cerevisiae and the role of transcription factors. Nat Genet 2003, 35(1):57-64.
-
(2003)
Nat Genet
, vol.35
, Issue.1
, pp. 57-64
-
-
Yvert, G.1
Brem, R.B.2
Whittle, J.3
Akey, J.M.4
Foss, E.5
Smith, E.N.6
Mackelprang, R.7
Kruglyak, L.8
-
39
-
-
0037177625
-
Genetic dissection of transcriptional regulation in budding yeast
-
10.1126/science.1069516, 11923494
-
Brem RB, Yvert G, Clinton R, Kruglyak L. Genetic dissection of transcriptional regulation in budding yeast. Science 2002, 296(5568):752-755. 10.1126/science.1069516, 11923494.
-
(2002)
Science
, vol.296
, Issue.5568
, pp. 752-755
-
-
Brem, R.B.1
Yvert, G.2
Clinton, R.3
Kruglyak, L.4
-
40
-
-
4444300886
-
Effect of fatty acid membrane composition on whole-cell biocatalysts for biodiesel-fuel production
-
Hama S, Yamaji H, Kaieda M, Oda M, Kondo A, Fukuda H. Effect of fatty acid membrane composition on whole-cell biocatalysts for biodiesel-fuel production. Biochem Eng J 2004, 21(2):155-160.
-
(2004)
Biochem Eng J
, vol.21
, Issue.2
, pp. 155-160
-
-
Hama, S.1
Yamaji, H.2
Kaieda, M.3
Oda, M.4
Kondo, A.5
Fukuda, H.6
-
41
-
-
84857148362
-
A Novel Strategy to Construct Yeast Saccharomyces cerevisiae Strains for Very High Gravity Fermentation
-
doi:31210.31371/journal.pone.0031235, 3281935, 22363590
-
Tao XL, Zheng DQ, Liu TZWPM, Zhao WP, Zhu MY, Jiang XH, Zhao YH, C WX. A Novel Strategy to Construct Yeast Saccharomyces cerevisiae Strains for Very High Gravity Fermentation. PLoS One 2012, 7(2):e31235. doi:31210.31371/journal.pone.0031235, 3281935, 22363590.
-
(2012)
PLoS One
, vol.7
, Issue.2
-
-
Tao, X.L.1
Zheng, D.Q.2
Liu, T.Z.W.P.M.3
Zhao, W.P.4
Zhu, M.Y.5
Jiang, X.H.6
Zhao, Y.H.7
C, W.X.8
-
42
-
-
50149084043
-
Double-strand breaks associated with repetitive DNA can reshape the genome
-
10.1073/pnas.0804529105, 2515620, 18701715
-
Argueso JL, Westmoreland J, Mieczkowski PA, Gawel M, Petes TD, Resnick MA. Double-strand breaks associated with repetitive DNA can reshape the genome. Proc Natl Acad Sci USA 2008, 105(33):11845-11850. 10.1073/pnas.0804529105, 2515620, 18701715.
-
(2008)
Proc Natl Acad Sci USA
, vol.105
, Issue.33
, pp. 11845-11850
-
-
Argueso, J.L.1
Westmoreland, J.2
Mieczkowski, P.A.3
Gawel, M.4
Petes, T.D.5
Resnick, M.A.6
-
43
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
-
10.1093/nar/25.17.3389, 146917, 9254694
-
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 1997, 25(17):3389-3402. 10.1093/nar/25.17.3389, 146917, 9254694.
-
(1997)
Nucleic Acids Res
, vol.25
, Issue.17
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
44
-
-
0036226603
-
BLAT - The BLAST-like alignment tool
-
187518, 11932250
-
Kent WJ. BLAT - The BLAST-like alignment tool. Genome Res 2002, 12(4):656-664. 187518, 11932250.
-
(2002)
Genome Res
, vol.12
, Issue.4
, pp. 656-664
-
-
Kent, W.J.1
-
45
-
-
34147132825
-
Identifying bacterial genes and endosymbiont DNA with Glimmer
-
10.1093/bioinformatics/btm009, 2387122, 17237039
-
Delcher AL, Bratke KA, Powers EC, Salzberg SL. Identifying bacterial genes and endosymbiont DNA with Glimmer. Bioinformatics 2007, 23(6):673-679. 10.1093/bioinformatics/btm009, 2387122, 17237039.
-
(2007)
Bioinformatics
, vol.23
, Issue.6
, pp. 673-679
-
-
Delcher, A.L.1
Bratke, K.A.2
Powers, E.C.3
Salzberg, S.L.4
-
46
-
-
24044433279
-
ACT: the Artemis comparison tool
-
10.1093/bioinformatics/bti553, 15976072
-
Carver TJ, Rutherford KM, Berriman M, Rajandream MA, Barrell BG, Parkhill J. ACT: the Artemis comparison tool. Bioinformatics 2005, 21(16):3422-3423. 10.1093/bioinformatics/bti553, 15976072.
-
(2005)
Bioinformatics
, vol.21
, Issue.16
, pp. 3422-3423
-
-
Carver, T.J.1
Rutherford, K.M.2
Berriman, M.3
Rajandream, M.A.4
Barrell, B.G.5
Parkhill, J.6
-
47
-
-
77956107299
-
Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing
-
10.1093/nar/gkq256, 2926611, 20392818
-
Wang B, Guo GW, Wang C, Lin Y, Wang XN, Zhao MM, Guo Y, He MH, Zhang Y, Pan L. Survey of the transcriptome of Aspergillus oryzae via massively parallel mRNA sequencing. Nucleic Acids Res 2010, 38(15):5075-5087. 10.1093/nar/gkq256, 2926611, 20392818.
-
(2010)
Nucleic Acids Res
, vol.38
, Issue.15
, pp. 5075-5087
-
-
Wang, B.1
Guo, G.W.2
Wang, C.3
Lin, Y.4
Wang, X.N.5
Zhao, M.M.6
Guo, Y.7
He, M.H.8
Zhang, Y.9
Pan, L.10
-
48
-
-
67650711615
-
SOAP2: an improved ultrafast tool for short read alignment
-
10.1093/bioinformatics/btp336, 19497933
-
Li RQ, Yu C, Li YR, Lam TW, Yiu SM, Kristiansen K, Wang J. SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 2009, 25(15):1966-1967. 10.1093/bioinformatics/btp336, 19497933.
-
(2009)
Bioinformatics
, vol.25
, Issue.15
, pp. 1966-1967
-
-
Li, R.Q.1
Yu, C.2
Li, Y.R.3
Lam, T.W.4
Yiu, S.M.5
Kristiansen, K.6
Wang, J.7
-
49
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
10.1038/nmeth.1226, 18516045
-
Mortazavi A, Williams BA, Mccue K, Schaeffer L, Wold B. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 2008, 5(7):621-628. 10.1038/nmeth.1226, 18516045.
-
(2008)
Nat Methods
, vol.5
, Issue.7
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
Mccue, K.3
Schaeffer, L.4
Wold, B.5
-
50
-
-
0030681260
-
The significance of digital gene expression profiles
-
Audic S, Claverie JM. The significance of digital gene expression profiles. Genome Res 1997, 7(10):986-995.
-
(1997)
Genome Res
, vol.7
, Issue.10
, pp. 986-995
-
-
Audic, S.1
Claverie, J.M.2
-
51
-
-
79955718565
-
Drug resistance marker-aided genome shuffling to improve acetic acid tolerance in Saccharomyces cerevisiae
-
Zheng DQ, Wu XC, Wang PM, Chi XQ, Tao XL, Li P, Jiang XH, Zhao YH. Drug resistance marker-aided genome shuffling to improve acetic acid tolerance in Saccharomyces cerevisiae. J Ind Microbiol Biot 2011, 38(3):415-422.
-
(2011)
J Ind Microbiol Biot
, vol.38
, Issue.3
, pp. 415-422
-
-
Zheng, D.Q.1
Wu, X.C.2
Wang, P.M.3
Chi, X.Q.4
Tao, X.L.5
Li, P.6
Jiang, X.H.7
Zhao, Y.H.8
|